Strain Fitness in Serratia liquefaciens MT49 around IAI46_03670

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03665 and IAI46_03670 are separated by 464 nucleotidesIAI46_03670 and IAI46_03675 are separated by 321 nucleotides IAI46_03665: IAI46_03665 - urocanate hydratase, at 797,788 to 799,479 _03665 IAI46_03670: IAI46_03670 - aromatic acid/H+ symport family MFS transporter, at 799,944 to 801,290 _03670 IAI46_03675: IAI46_03675 - 7-carboxy-7-deazaguanine synthase QueE, at 801,612 to 802,283 _03675 Position (kb) 799 800 801 802Strain fitness (log2 ratio) -2 -1 0 1 2at 798.999 kb on - strand, within IAI46_03665at 799.032 kb on - strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.064 kb on + strand, within IAI46_03665at 799.065 kb on - strand, within IAI46_03665at 799.065 kb on - strand, within IAI46_03665at 799.094 kb on + strand, within IAI46_03665at 799.094 kb on + strand, within IAI46_03665at 799.161 kb on + strand, within IAI46_03665at 799.161 kb on + strand, within IAI46_03665at 799.287 kb on - strand, within IAI46_03665at 799.326 kb on - strandat 799.326 kb on - strandat 799.326 kb on - strandat 799.420 kb on + strandat 799.444 kb on + strandat 799.468 kb on - strandat 799.544 kb on - strandat 799.563 kb on + strandat 799.568 kb on + strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.712 kb on - strandat 799.788 kb on - strandat 799.831 kb on + strandat 799.832 kb on - strandat 799.903 kb on - strandat 799.945 kb on + strandat 799.948 kb on - strandat 800.000 kb on + strandat 800.001 kb on - strandat 800.165 kb on - strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.231 kb on + strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.232 kb on - strand, within IAI46_03670at 800.321 kb on + strand, within IAI46_03670at 800.321 kb on + strand, within IAI46_03670at 800.422 kb on + strand, within IAI46_03670at 800.468 kb on - strand, within IAI46_03670at 800.470 kb on + strand, within IAI46_03670at 800.470 kb on + strand, within IAI46_03670at 800.471 kb on - strand, within IAI46_03670at 800.491 kb on + strand, within IAI46_03670at 800.524 kb on + strand, within IAI46_03670at 800.524 kb on + strand, within IAI46_03670at 800.525 kb on - strand, within IAI46_03670at 800.525 kb on - strand, within IAI46_03670at 800.581 kb on + strand, within IAI46_03670at 800.582 kb on - strand, within IAI46_03670at 800.582 kb on - strand, within IAI46_03670at 800.582 kb on - strand, within IAI46_03670at 800.637 kb on - strand, within IAI46_03670at 800.637 kb on - strand, within IAI46_03670at 800.677 kb on + strand, within IAI46_03670at 800.678 kb on - strand, within IAI46_03670at 800.678 kb on - strand, within IAI46_03670at 800.712 kb on + strand, within IAI46_03670at 800.757 kb on - strand, within IAI46_03670at 800.757 kb on - strand, within IAI46_03670at 800.757 kb on - strand, within IAI46_03670at 800.830 kb on + strand, within IAI46_03670at 800.831 kb on - strand, within IAI46_03670at 800.951 kb on + strand, within IAI46_03670at 800.968 kb on + strand, within IAI46_03670at 801.155 kb on + strand, within IAI46_03670at 801.156 kb on - strandat 801.157 kb on + strandat 801.158 kb on - strandat 801.158 kb on - strandat 801.158 kb on - strandat 801.266 kb on + strandat 801.323 kb on + strandat 801.365 kb on + strandat 801.365 kb on + strandat 801.365 kb on + strandat 801.366 kb on - strandat 801.366 kb on - strandat 801.366 kb on - strandat 801.386 kb on + strandat 801.386 kb on + strandat 801.387 kb on - strandat 801.442 kb on + strandat 801.443 kb on - strandat 801.443 kb on - strandat 801.449 kb on + strandat 801.450 kb on - strandat 801.450 kb on - strandat 801.479 kb on + strandat 801.505 kb on + strandat 801.737 kb on + strand, within IAI46_03675at 801.738 kb on - strand, within IAI46_03675at 801.738 kb on - strand, within IAI46_03675at 801.861 kb on + strand, within IAI46_03675at 801.861 kb on + strand, within IAI46_03675at 801.862 kb on - strand, within IAI46_03675at 801.862 kb on - strand, within IAI46_03675at 801.863 kb on + strand, within IAI46_03675at 801.863 kb on + strand, within IAI46_03675at 801.863 kb on + strand, within IAI46_03675at 801.864 kb on - strand, within IAI46_03675at 801.864 kb on - strand, within IAI46_03675at 801.880 kb on + strand, within IAI46_03675at 801.881 kb on - strand, within IAI46_03675at 801.906 kb on + strand, within IAI46_03675at 801.906 kb on + strand, within IAI46_03675at 801.906 kb on + strand, within IAI46_03675at 801.906 kb on + strand, within IAI46_03675at 801.906 kb on + strand, within IAI46_03675at 801.907 kb on - strand, within IAI46_03675at 801.907 kb on - strand, within IAI46_03675at 802.263 kb on - strandat 802.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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798,999 - IAI46_03665 0.72 +0.5
799,032 - IAI46_03665 0.74 -0.5
799,064 + IAI46_03665 0.75 +0.1
799,064 + IAI46_03665 0.75 -0.6
799,064 + IAI46_03665 0.75 -0.2
799,064 + IAI46_03665 0.75 -1.5
799,064 + IAI46_03665 0.75 +0.2
799,064 + IAI46_03665 0.75 +0.4
799,064 + IAI46_03665 0.75 -0.4
799,065 - IAI46_03665 0.75 -0.5
799,065 - IAI46_03665 0.75 +0.6
799,094 + IAI46_03665 0.77 +0.5
799,094 + IAI46_03665 0.77 -0.3
799,161 + IAI46_03665 0.81 +0.3
799,161 + IAI46_03665 0.81 -0.0
799,287 - IAI46_03665 0.89 +2.5
799,326 - +0.0
799,326 - -0.7
799,326 - +0.9
799,420 + +0.5
799,444 + -0.2
799,468 - +0.3
799,544 - +0.6
799,563 + +0.0
799,568 + -0.5
799,712 - +0.3
799,712 - +0.5
799,712 - +0.3
799,712 - -0.3
799,788 - -1.7
799,831 + -0.0
799,832 - -0.0
799,903 - +0.9
799,945 + -0.3
799,948 - -0.5
800,000 + +0.1
800,001 - +0.8
800,165 - IAI46_03670 0.16 -0.9
800,231 + IAI46_03670 0.21 +0.6
800,231 + IAI46_03670 0.21 -0.8
800,231 + IAI46_03670 0.21 +0.8
800,232 - IAI46_03670 0.21 +0.5
800,232 - IAI46_03670 0.21 +1.1
800,232 - IAI46_03670 0.21 +0.3
800,321 + IAI46_03670 0.28 -1.7
800,321 + IAI46_03670 0.28 +0.3
800,422 + IAI46_03670 0.35 +0.4
800,468 - IAI46_03670 0.39 -1.4
800,470 + IAI46_03670 0.39 -0.8
800,470 + IAI46_03670 0.39 +0.4
800,471 - IAI46_03670 0.39 +1.0
800,491 + IAI46_03670 0.41 +1.3
800,524 + IAI46_03670 0.43 -1.2
800,524 + IAI46_03670 0.43 +0.1
800,525 - IAI46_03670 0.43 +0.4
800,525 - IAI46_03670 0.43 +2.0
800,581 + IAI46_03670 0.47 -0.1
800,582 - IAI46_03670 0.47 +0.9
800,582 - IAI46_03670 0.47 +0.7
800,582 - IAI46_03670 0.47 -0.7
800,637 - IAI46_03670 0.51 -0.3
800,637 - IAI46_03670 0.51 +0.8
800,677 + IAI46_03670 0.54 -0.1
800,678 - IAI46_03670 0.54 +0.2
800,678 - IAI46_03670 0.54 +0.0
800,712 + IAI46_03670 0.57 +0.2
800,757 - IAI46_03670 0.60 -2.1
800,757 - IAI46_03670 0.60 -0.2
800,757 - IAI46_03670 0.60 -0.4
800,830 + IAI46_03670 0.66 -0.8
800,831 - IAI46_03670 0.66 +0.6
800,951 + IAI46_03670 0.75 +0.1
800,968 + IAI46_03670 0.76 -0.2
801,155 + IAI46_03670 0.90 -0.1
801,156 - -0.3
801,157 + -1.1
801,158 - +0.5
801,158 - +0.8
801,158 - +0.4
801,266 + -1.1
801,323 + -1.0
801,365 + +0.6
801,365 + +0.7
801,365 + -0.1
801,366 - +0.4
801,366 - -0.8
801,366 - -1.2
801,386 + -0.0
801,386 + -0.1
801,387 - +0.3
801,442 + +0.2
801,443 - -0.1
801,443 - +2.0
801,449 + -0.8
801,450 - +0.7
801,450 - -0.8
801,479 + -0.3
801,505 + -0.1
801,737 + IAI46_03675 0.19 -1.1
801,738 - IAI46_03675 0.19 -0.6
801,738 - IAI46_03675 0.19 -0.3
801,861 + IAI46_03675 0.37 -0.4
801,861 + IAI46_03675 0.37 -0.1
801,862 - IAI46_03675 0.37 +0.4
801,862 - IAI46_03675 0.37 +0.2
801,863 + IAI46_03675 0.37 +0.2
801,863 + IAI46_03675 0.37 +0.6
801,863 + IAI46_03675 0.37 +1.5
801,864 - IAI46_03675 0.38 -0.8
801,864 - IAI46_03675 0.38 +0.7
801,880 + IAI46_03675 0.40 -1.6
801,881 - IAI46_03675 0.40 +0.1
801,906 + IAI46_03675 0.44 +1.9
801,906 + IAI46_03675 0.44 -0.3
801,906 + IAI46_03675 0.44 -1.0
801,906 + IAI46_03675 0.44 -0.3
801,906 + IAI46_03675 0.44 +0.4
801,907 - IAI46_03675 0.44 -0.7
801,907 - IAI46_03675 0.44 -1.3
802,263 - +0.6
802,267 - +0.1

Or see this region's nucleotide sequence