Strain Fitness in Serratia liquefaciens MT49 around IAI46_03660

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03655 and IAI46_03660 are separated by 100 nucleotidesIAI46_03660 and IAI46_03665 overlap by 4 nucleotides IAI46_03655: IAI46_03655 - amino acid permease, at 794,773 to 796,155 _03655 IAI46_03660: IAI46_03660 - histidine ammonia-lyase, at 796,256 to 797,791 _03660 IAI46_03665: IAI46_03665 - urocanate hydratase, at 797,788 to 799,479 _03665 Position (kb) 796 797 798Strain fitness (log2 ratio) -1 0 1 2at 795.380 kb on + strand, within IAI46_03655at 795.380 kb on + strand, within IAI46_03655at 795.381 kb on - strand, within IAI46_03655at 795.413 kb on + strand, within IAI46_03655at 795.413 kb on + strand, within IAI46_03655at 795.414 kb on - strand, within IAI46_03655at 795.573 kb on + strand, within IAI46_03655at 795.813 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.815 kb on + strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.816 kb on - strand, within IAI46_03655at 795.867 kb on + strand, within IAI46_03655at 795.868 kb on - strand, within IAI46_03655at 795.869 kb on + strand, within IAI46_03655at 795.869 kb on + strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.870 kb on - strand, within IAI46_03655at 795.908 kb on + strand, within IAI46_03655at 795.909 kb on - strand, within IAI46_03655at 795.909 kb on - strand, within IAI46_03655at 795.920 kb on + strand, within IAI46_03655at 795.921 kb on - strand, within IAI46_03655at 795.921 kb on - strand, within IAI46_03655at 795.984 kb on + strand, within IAI46_03655at 796.062 kb on - strandat 796.062 kb on - strandat 796.099 kb on - strandat 796.099 kb on - strandat 796.120 kb on + strandat 796.121 kb on - strandat 796.149 kb on + strandat 796.246 kb on + strandat 796.253 kb on + strandat 796.258 kb on - strandat 796.267 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.365 kb on + strandat 796.366 kb on - strandat 796.368 kb on + strandat 796.368 kb on + strandat 796.369 kb on - strandat 796.631 kb on - strand, within IAI46_03660at 796.646 kb on - strand, within IAI46_03660at 796.723 kb on + strand, within IAI46_03660at 796.842 kb on - strand, within IAI46_03660at 796.950 kb on + strand, within IAI46_03660at 796.961 kb on + strand, within IAI46_03660at 797.061 kb on - strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660at 797.071 kb on + strand, within IAI46_03660at 797.596 kb on + strand, within IAI46_03660at 797.631 kb on + strand, within IAI46_03660at 797.632 kb on - strand, within IAI46_03660at 797.695 kb on - strandat 797.734 kb on - strandat 797.868 kb on - strandat 797.911 kb on - strandat 797.911 kb on - strandat 797.911 kb on - strandat 797.928 kb on + strandat 798.045 kb on + strand, within IAI46_03665at 798.102 kb on + strand, within IAI46_03665at 798.102 kb on + strand, within IAI46_03665at 798.103 kb on - strand, within IAI46_03665at 798.252 kb on + strand, within IAI46_03665at 798.252 kb on + strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.253 kb on - strand, within IAI46_03665at 798.294 kb on + strand, within IAI46_03665at 798.359 kb on + strand, within IAI46_03665at 798.360 kb on - strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.434 kb on + strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.435 kb on - strand, within IAI46_03665at 798.629 kb on + strand, within IAI46_03665

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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795,380 + IAI46_03655 0.44 +0.5
795,380 + IAI46_03655 0.44 +0.7
795,381 - IAI46_03655 0.44 +0.3
795,413 + IAI46_03655 0.46 -0.5
795,413 + IAI46_03655 0.46 +0.5
795,414 - IAI46_03655 0.46 +0.9
795,573 + IAI46_03655 0.58 -0.5
795,813 + IAI46_03655 0.75 -1.4
795,815 + IAI46_03655 0.75 -0.6
795,815 + IAI46_03655 0.75 +0.9
795,815 + IAI46_03655 0.75 -0.4
795,815 + IAI46_03655 0.75 +0.6
795,815 + IAI46_03655 0.75 +0.8
795,815 + IAI46_03655 0.75 -0.3
795,815 + IAI46_03655 0.75 +0.1
795,815 + IAI46_03655 0.75 +0.8
795,816 - IAI46_03655 0.75 -0.7
795,816 - IAI46_03655 0.75 +0.7
795,816 - IAI46_03655 0.75 -0.6
795,816 - IAI46_03655 0.75 +0.4
795,816 - IAI46_03655 0.75 -1.5
795,816 - IAI46_03655 0.75 -0.1
795,816 - IAI46_03655 0.75 -0.6
795,816 - IAI46_03655 0.75 +0.3
795,867 + IAI46_03655 0.79 +0.2
795,868 - IAI46_03655 0.79 -1.0
795,869 + IAI46_03655 0.79 -0.1
795,869 + IAI46_03655 0.79 -0.9
795,870 - IAI46_03655 0.79 +0.5
795,870 - IAI46_03655 0.79 -1.2
795,870 - IAI46_03655 0.79 +0.2
795,908 + IAI46_03655 0.82 +0.4
795,909 - IAI46_03655 0.82 -0.0
795,909 - IAI46_03655 0.82 -0.1
795,920 + IAI46_03655 0.83 +0.4
795,921 - IAI46_03655 0.83 -0.0
795,921 - IAI46_03655 0.83 -0.9
795,984 + IAI46_03655 0.88 -0.1
796,062 - +0.0
796,062 - +0.5
796,099 - +0.1
796,099 - -0.4
796,120 + +0.6
796,121 - +0.6
796,149 + -0.3
796,246 + -0.7
796,253 + +0.5
796,258 - +0.3
796,267 + -0.8
796,365 + +0.2
796,365 + -0.3
796,365 + +1.2
796,365 + +0.3
796,365 + +0.3
796,366 - +0.6
796,368 + +0.7
796,368 + +1.3
796,369 - +1.8
796,631 - IAI46_03660 0.24 +0.0
796,646 - IAI46_03660 0.25 -0.3
796,723 + IAI46_03660 0.30 +0.5
796,842 - IAI46_03660 0.38 +0.9
796,950 + IAI46_03660 0.45 +1.0
796,961 + IAI46_03660 0.46 +0.2
797,061 - IAI46_03660 0.52 +1.3
797,071 + IAI46_03660 0.53 +0.4
797,071 + IAI46_03660 0.53 +0.6
797,596 + IAI46_03660 0.87 +1.5
797,631 + IAI46_03660 0.90 +0.1
797,632 - IAI46_03660 0.90 -0.3
797,695 - +0.1
797,734 - -1.2
797,868 - +1.0
797,911 - -0.5
797,911 - -0.3
797,911 - +0.2
797,928 + -0.1
798,045 + IAI46_03665 0.15 +0.3
798,102 + IAI46_03665 0.19 +0.1
798,102 + IAI46_03665 0.19 +0.0
798,103 - IAI46_03665 0.19 +0.9
798,252 + IAI46_03665 0.27 +0.1
798,252 + IAI46_03665 0.27 +0.6
798,253 - IAI46_03665 0.27 -0.2
798,253 - IAI46_03665 0.27 +0.8
798,253 - IAI46_03665 0.27 +0.2
798,294 + IAI46_03665 0.30 +0.2
798,359 + IAI46_03665 0.34 +0.3
798,360 - IAI46_03665 0.34 -0.5
798,434 + IAI46_03665 0.38 -0.1
798,434 + IAI46_03665 0.38 -0.1
798,434 + IAI46_03665 0.38 -0.5
798,435 - IAI46_03665 0.38 +0.1
798,435 - IAI46_03665 0.38 -0.5
798,435 - IAI46_03665 0.38 +0.3
798,435 - IAI46_03665 0.38 -0.1
798,435 - IAI46_03665 0.38 +0.7
798,629 + IAI46_03665 0.50 +0.2

Or see this region's nucleotide sequence