Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02930 and IAI46_02935 are separated by 104 nucleotides IAI46_02935 and IAI46_02940 are separated by 104 nucleotides IAI46_02940 and IAI46_02945 are separated by 65 nucleotides
IAI46_02930: IAI46_02930 - transcriptional regulator, at 625,375 to 625,590
_02930
IAI46_02935: IAI46_02935 - YtjB family periplasmic protein, at 625,695 to 626,369
_02935
IAI46_02940: IAI46_02940 - phosphoserine phosphatase, at 626,474 to 627,451
_02940
IAI46_02945: IAI46_02945 - DNA repair protein RadA, at 627,517 to 628,902
_02945
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.493 kb on + strand, within IAI46_02930 at 625.506 kb on + strand, within IAI46_02930 at 625.525 kb on + strand, within IAI46_02930 at 625.526 kb on - strand, within IAI46_02930 at 625.559 kb on - strand, within IAI46_02930 at 625.570 kb on + strand at 625.570 kb on + strand at 625.622 kb on - strand at 625.685 kb on + strand at 625.686 kb on - strand at 625.686 kb on - strand at 625.697 kb on - strand at 625.742 kb on + strand at 625.743 kb on - strand at 625.763 kb on + strand, within IAI46_02935 at 625.763 kb on + strand, within IAI46_02935 at 626.015 kb on + strand, within IAI46_02935 at 626.040 kb on + strand, within IAI46_02935 at 626.042 kb on + strand, within IAI46_02935 at 626.042 kb on + strand, within IAI46_02935 at 626.042 kb on + strand, within IAI46_02935 at 626.042 kb on + strand, within IAI46_02935 at 626.043 kb on - strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.046 kb on + strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.047 kb on - strand, within IAI46_02935 at 626.071 kb on - strand, within IAI46_02935 at 626.358 kb on - strand at 626.398 kb on + strand at 626.398 kb on + strand at 626.398 kb on + strand at 626.398 kb on + strand at 626.399 kb on - strand at 626.399 kb on - strand at 626.421 kb on + strand at 626.426 kb on + strand at 626.426 kb on + strand at 626.427 kb on - strand at 626.427 kb on - strand at 626.427 kb on - strand at 626.445 kb on - strand at 626.469 kb on + strand at 626.483 kb on - strand at 626.483 kb on - strand at 626.492 kb on + strand at 626.492 kb on + strand at 626.493 kb on - strand at 626.599 kb on - strand, within IAI46_02940 at 626.601 kb on + strand, within IAI46_02940 at 626.601 kb on + strand, within IAI46_02940 at 626.601 kb on + strand, within IAI46_02940 at 626.601 kb on + strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.602 kb on - strand, within IAI46_02940 at 626.604 kb on - strand, within IAI46_02940 at 626.604 kb on - strand, within IAI46_02940 at 626.604 kb on - strand, within IAI46_02940 at 626.688 kb on + strand, within IAI46_02940 at 626.696 kb on + strand, within IAI46_02940 at 626.696 kb on + strand, within IAI46_02940 at 626.697 kb on - strand, within IAI46_02940 at 626.966 kb on - strand, within IAI46_02940 at 627.101 kb on + strand, within IAI46_02940 at 627.101 kb on + strand, within IAI46_02940 at 627.101 kb on + strand, within IAI46_02940 at 627.101 kb on + strand, within IAI46_02940 at 627.102 kb on - strand, within IAI46_02940 at 627.102 kb on - strand, within IAI46_02940 at 627.102 kb on - strand, within IAI46_02940 at 627.104 kb on + strand, within IAI46_02940 at 627.113 kb on + strand, within IAI46_02940 at 627.114 kb on - strand, within IAI46_02940 at 627.342 kb on - strand, within IAI46_02940 at 627.362 kb on + strand at 627.362 kb on + strand at 627.362 kb on + strand at 627.363 kb on - strand at 627.363 kb on - strand at 627.401 kb on - strand at 627.449 kb on + strand at 627.449 kb on + strand at 627.454 kb on + strand at 627.455 kb on - strand at 627.497 kb on + strand at 627.498 kb on - strand at 627.501 kb on - strand at 627.511 kb on + strand at 627.512 kb on - strand at 627.512 kb on - strand at 627.514 kb on + strand at 627.514 kb on + strand at 627.514 kb on + strand at 627.515 kb on - strand at 627.515 kb on - strand at 627.515 kb on - strand at 627.515 kb on - strand at 627.546 kb on - strand at 627.550 kb on - strand at 627.550 kb on - strand at 627.619 kb on - strand at 627.619 kb on - strand at 627.843 kb on + strand, within IAI46_02945 at 627.844 kb on - strand, within IAI46_02945 at 627.895 kb on + strand, within IAI46_02945 at 627.895 kb on + strand, within IAI46_02945 at 627.896 kb on - strand, within IAI46_02945 at 627.896 kb on - strand, within IAI46_02945 at 627.972 kb on + strand, within IAI46_02945 at 627.972 kb on + strand, within IAI46_02945 at 627.973 kb on - strand, within IAI46_02945 at 628.107 kb on - strand, within IAI46_02945 at 628.123 kb on + strand, within IAI46_02945 at 628.124 kb on - strand, within IAI46_02945 at 628.211 kb on + strand, within IAI46_02945 at 628.211 kb on + strand, within IAI46_02945 at 628.211 kb on + strand, within IAI46_02945 at 628.212 kb on - strand, within IAI46_02945 at 628.212 kb on - strand, within IAI46_02945 at 628.272 kb on + strand, within IAI46_02945 at 628.272 kb on + strand, within IAI46_02945 at 628.273 kb on - strand, within IAI46_02945
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 625,493 + IAI46_02930 0.55 +0.9 625,506 + IAI46_02930 0.61 -0.1 625,525 + IAI46_02930 0.69 -0.2 625,526 - IAI46_02930 0.70 +0.1 625,559 - IAI46_02930 0.85 +1.5 625,570 + +0.1 625,570 + -0.3 625,622 - +0.4 625,685 + -0.2 625,686 - +1.0 625,686 - -0.0 625,697 - -0.5 625,742 + +0.2 625,743 - +0.5 625,763 + IAI46_02935 0.10 -0.6 625,763 + IAI46_02935 0.10 +0.4 626,015 + IAI46_02935 0.47 +0.5 626,040 + IAI46_02935 0.51 +1.4 626,042 + IAI46_02935 0.51 -0.5 626,042 + IAI46_02935 0.51 -1.4 626,042 + IAI46_02935 0.51 -0.5 626,042 + IAI46_02935 0.51 +0.1 626,043 - IAI46_02935 0.52 +0.4 626,046 + IAI46_02935 0.52 +0.5 626,046 + IAI46_02935 0.52 +0.1 626,046 + IAI46_02935 0.52 -1.0 626,046 + IAI46_02935 0.52 +0.8 626,046 + IAI46_02935 0.52 +0.7 626,046 + IAI46_02935 0.52 +0.2 626,046 + IAI46_02935 0.52 +0.2 626,047 - IAI46_02935 0.52 +0.1 626,047 - IAI46_02935 0.52 -0.9 626,047 - IAI46_02935 0.52 -0.3 626,047 - IAI46_02935 0.52 +0.5 626,047 - IAI46_02935 0.52 +1.3 626,047 - IAI46_02935 0.52 -1.0 626,047 - IAI46_02935 0.52 +0.2 626,071 - IAI46_02935 0.56 -0.7 626,358 - -0.7 626,398 + -1.0 626,398 + -0.8 626,398 + +0.3 626,398 + +0.3 626,399 - +0.2 626,399 - -1.1 626,421 + +0.6 626,426 + -0.8 626,426 + +1.0 626,427 - -0.9 626,427 - -1.4 626,427 - -1.8 626,445 - -1.6 626,469 + -0.4 626,483 - +0.1 626,483 - +0.0 626,492 + -1.3 626,492 + -1.0 626,493 - +0.0 626,599 - IAI46_02940 0.13 +0.6 626,601 + IAI46_02940 0.13 -0.3 626,601 + IAI46_02940 0.13 -1.8 626,601 + IAI46_02940 0.13 -1.0 626,601 + IAI46_02940 0.13 -2.0 626,602 - IAI46_02940 0.13 -1.1 626,602 - IAI46_02940 0.13 -1.0 626,602 - IAI46_02940 0.13 -0.2 626,602 - IAI46_02940 0.13 -1.3 626,602 - IAI46_02940 0.13 -1.1 626,602 - IAI46_02940 0.13 -0.4 626,602 - IAI46_02940 0.13 -2.3 626,604 - IAI46_02940 0.13 -1.2 626,604 - IAI46_02940 0.13 -0.4 626,604 - IAI46_02940 0.13 -0.3 626,688 + IAI46_02940 0.22 -1.2 626,696 + IAI46_02940 0.23 +0.1 626,696 + IAI46_02940 0.23 -1.3 626,697 - IAI46_02940 0.23 -0.9 626,966 - IAI46_02940 0.50 -0.9 627,101 + IAI46_02940 0.64 -3.1 627,101 + IAI46_02940 0.64 -0.5 627,101 + IAI46_02940 0.64 -2.4 627,101 + IAI46_02940 0.64 -1.9 627,102 - IAI46_02940 0.64 -1.0 627,102 - IAI46_02940 0.64 -0.3 627,102 - IAI46_02940 0.64 -0.0 627,104 + IAI46_02940 0.64 -1.0 627,113 + IAI46_02940 0.65 -1.1 627,114 - IAI46_02940 0.65 -3.1 627,342 - IAI46_02940 0.89 +0.3 627,362 + -1.1 627,362 + -1.4 627,362 + -0.7 627,363 - -3.2 627,363 - -1.2 627,401 - -0.2 627,449 + +0.2 627,449 + +0.2 627,454 + +0.3 627,455 - -0.0 627,497 + +1.1 627,498 - +1.0 627,501 - -1.0 627,511 + +0.8 627,512 - -1.8 627,512 - +0.1 627,514 + +1.2 627,514 + +0.5 627,514 + -1.4 627,515 - +0.2 627,515 - -0.9 627,515 - +0.2 627,515 - -0.1 627,546 - +0.1 627,550 - -1.5 627,550 - +0.9 627,619 - +0.5 627,619 - -0.1 627,843 + IAI46_02945 0.24 -0.0 627,844 - IAI46_02945 0.24 +0.7 627,895 + IAI46_02945 0.27 +0.3 627,895 + IAI46_02945 0.27 -0.2 627,896 - IAI46_02945 0.27 -0.2 627,896 - IAI46_02945 0.27 -1.0 627,972 + IAI46_02945 0.33 +0.7 627,972 + IAI46_02945 0.33 +0.9 627,973 - IAI46_02945 0.33 -0.8 628,107 - IAI46_02945 0.43 -0.3 628,123 + IAI46_02945 0.44 +0.5 628,124 - IAI46_02945 0.44 -1.5 628,211 + IAI46_02945 0.50 -0.6 628,211 + IAI46_02945 0.50 +0.6 628,211 + IAI46_02945 0.50 -0.5 628,212 - IAI46_02945 0.50 +1.2 628,212 - IAI46_02945 0.50 -0.2 628,272 + IAI46_02945 0.54 +0.6 628,272 + IAI46_02945 0.54 +0.4 628,273 - IAI46_02945 0.55 -0.3
Or see this region's nucleotide sequence