Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02865 and IAI46_02870 overlap by 56 nucleotides IAI46_02870 and IAI46_02875 are separated by 170 nucleotides IAI46_02875 and IAI46_02880 are separated by 532 nucleotides
IAI46_02865: IAI46_02865 - DNA polymerase III subunit psi, at 612,701 to 613,138
_02865
IAI46_02870: IAI46_02870 - ribosomal protein S18-alanine N-acetyltransferase, at 613,083 to 613,526
_02870
IAI46_02875: IAI46_02875 - peptide chain release factor 3, at 613,697 to 615,286
_02875
IAI46_02880: IAI46_02880 - molecular chaperone OsmY, at 615,819 to 616,433
_02880
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.092 kb on - strand at 613.097 kb on + strand at 613.097 kb on + strand at 613.200 kb on + strand, within IAI46_02870 at 613.201 kb on - strand, within IAI46_02870 at 613.250 kb on + strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.426 kb on - strand, within IAI46_02870 at 613.463 kb on + strand, within IAI46_02870 at 613.463 kb on + strand, within IAI46_02870 at 613.468 kb on - strand, within IAI46_02870 at 613.468 kb on - strand, within IAI46_02870 at 613.471 kb on - strand, within IAI46_02870 at 613.524 kb on + strand at 613.525 kb on - strand at 613.610 kb on + strand at 613.610 kb on + strand at 613.618 kb on - strand at 613.622 kb on - strand at 613.676 kb on + strand at 613.676 kb on + strand at 613.897 kb on + strand, within IAI46_02875 at 613.898 kb on - strand, within IAI46_02875 at 613.898 kb on - strand, within IAI46_02875 at 613.991 kb on - strand, within IAI46_02875 at 613.991 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 613.995 kb on - strand, within IAI46_02875 at 614.068 kb on + strand, within IAI46_02875 at 614.082 kb on + strand, within IAI46_02875 at 614.116 kb on + strand, within IAI46_02875 at 614.200 kb on + strand, within IAI46_02875 at 614.201 kb on - strand, within IAI46_02875 at 614.212 kb on + strand, within IAI46_02875 at 614.243 kb on + strand, within IAI46_02875 at 614.243 kb on + strand, within IAI46_02875 at 614.252 kb on + strand, within IAI46_02875 at 614.267 kb on + strand, within IAI46_02875 at 614.268 kb on - strand, within IAI46_02875 at 614.268 kb on - strand, within IAI46_02875 at 614.284 kb on + strand, within IAI46_02875 at 614.307 kb on + strand, within IAI46_02875 at 614.307 kb on + strand, within IAI46_02875 at 614.308 kb on - strand, within IAI46_02875 at 614.614 kb on + strand, within IAI46_02875 at 614.698 kb on - strand, within IAI46_02875 at 614.698 kb on - strand, within IAI46_02875 at 614.698 kb on - strand, within IAI46_02875 at 614.698 kb on - strand, within IAI46_02875 at 614.774 kb on + strand, within IAI46_02875 at 614.775 kb on - strand, within IAI46_02875 at 614.827 kb on + strand, within IAI46_02875 at 615.043 kb on - strand, within IAI46_02875 at 615.043 kb on - strand, within IAI46_02875 at 615.065 kb on + strand, within IAI46_02875 at 615.083 kb on + strand, within IAI46_02875 at 615.083 kb on + strand, within IAI46_02875 at 615.084 kb on - strand, within IAI46_02875 at 615.157 kb on + strand at 615.157 kb on + strand at 615.158 kb on - strand at 615.169 kb on + strand at 615.169 kb on + strand at 615.170 kb on - strand at 615.203 kb on + strand at 615.203 kb on + strand at 615.204 kb on - strand at 615.204 kb on - strand at 615.285 kb on - strand at 615.305 kb on + strand at 615.320 kb on + strand at 615.320 kb on + strand at 615.320 kb on + strand at 615.321 kb on - strand at 615.321 kb on - strand at 615.321 kb on - strand at 615.321 kb on - strand at 615.322 kb on + strand at 615.322 kb on + strand at 615.323 kb on - strand at 615.323 kb on - strand at 615.344 kb on - strand at 615.350 kb on + strand at 615.396 kb on - strand at 615.423 kb on + strand at 615.423 kb on + strand at 615.423 kb on + strand at 615.423 kb on + strand at 615.423 kb on + strand at 615.424 kb on - strand at 615.424 kb on - strand at 615.424 kb on - strand at 615.424 kb on - strand at 615.424 kb on - strand at 615.430 kb on + strand at 615.432 kb on + strand at 615.432 kb on + strand at 615.432 kb on + strand at 615.436 kb on + strand at 615.437 kb on - strand at 615.437 kb on - strand at 615.451 kb on + strand at 615.465 kb on - strand at 615.487 kb on + strand at 615.517 kb on + strand at 615.538 kb on + strand at 615.542 kb on - strand at 615.548 kb on - strand at 615.548 kb on - strand at 615.557 kb on - strand at 615.630 kb on - strand at 615.681 kb on + strand at 615.707 kb on + strand at 615.707 kb on + strand at 615.729 kb on - strand at 615.743 kb on - strand at 615.743 kb on - strand at 615.743 kb on - strand at 615.801 kb on - strand at 615.902 kb on + strand, within IAI46_02880 at 615.903 kb on - strand, within IAI46_02880 at 615.903 kb on - strand, within IAI46_02880 at 615.936 kb on - strand, within IAI46_02880 at 615.981 kb on + strand, within IAI46_02880 at 615.981 kb on + strand, within IAI46_02880 at 615.982 kb on - strand, within IAI46_02880 at 615.982 kb on - strand, within IAI46_02880 at 615.982 kb on - strand, within IAI46_02880 at 616.043 kb on + strand, within IAI46_02880 at 616.044 kb on - strand, within IAI46_02880 at 616.055 kb on + strand, within IAI46_02880 at 616.056 kb on - strand, within IAI46_02880 at 616.056 kb on - strand, within IAI46_02880 at 616.079 kb on + strand, within IAI46_02880 at 616.218 kb on + strand, within IAI46_02880 at 616.218 kb on + strand, within IAI46_02880 at 616.219 kb on - strand, within IAI46_02880 at 616.219 kb on - strand, within IAI46_02880 at 616.219 kb on - strand, within IAI46_02880 at 616.219 kb on - strand, within IAI46_02880
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 613,092 - -0.1 613,097 + +0.5 613,097 + +0.1 613,200 + IAI46_02870 0.26 +0.5 613,201 - IAI46_02870 0.27 +0.2 613,250 + IAI46_02870 0.38 -1.0 613,426 - IAI46_02870 0.77 -1.2 613,426 - IAI46_02870 0.77 -0.3 613,426 - IAI46_02870 0.77 -0.9 613,426 - IAI46_02870 0.77 +0.3 613,463 + IAI46_02870 0.86 +1.7 613,463 + IAI46_02870 0.86 +1.3 613,468 - IAI46_02870 0.87 -1.1 613,468 - IAI46_02870 0.87 +0.9 613,471 - IAI46_02870 0.87 -0.9 613,524 + -0.4 613,525 - +0.6 613,610 + -0.8 613,610 + -0.4 613,618 - +1.1 613,622 - -1.2 613,676 + -0.1 613,676 + +1.1 613,897 + IAI46_02875 0.13 +0.2 613,898 - IAI46_02875 0.13 +0.2 613,898 - IAI46_02875 0.13 +0.1 613,991 - IAI46_02875 0.18 -0.5 613,991 - IAI46_02875 0.18 -1.3 613,995 - IAI46_02875 0.19 -0.0 613,995 - IAI46_02875 0.19 -1.6 613,995 - IAI46_02875 0.19 +0.5 614,068 + IAI46_02875 0.23 -2.9 614,082 + IAI46_02875 0.24 -0.7 614,116 + IAI46_02875 0.26 -0.7 614,200 + IAI46_02875 0.32 -0.2 614,201 - IAI46_02875 0.32 +1.2 614,212 + IAI46_02875 0.32 +0.3 614,243 + IAI46_02875 0.34 -1.3 614,243 + IAI46_02875 0.34 -1.5 614,252 + IAI46_02875 0.35 +0.3 614,267 + IAI46_02875 0.36 -1.2 614,268 - IAI46_02875 0.36 -1.2 614,268 - IAI46_02875 0.36 -0.8 614,284 + IAI46_02875 0.37 -1.6 614,307 + IAI46_02875 0.38 -0.5 614,307 + IAI46_02875 0.38 -2.6 614,308 - IAI46_02875 0.38 -0.2 614,614 + IAI46_02875 0.58 -0.2 614,698 - IAI46_02875 0.63 +0.8 614,698 - IAI46_02875 0.63 +0.1 614,698 - IAI46_02875 0.63 +0.1 614,698 - IAI46_02875 0.63 +1.3 614,774 + IAI46_02875 0.68 +0.5 614,775 - IAI46_02875 0.68 -1.2 614,827 + IAI46_02875 0.71 -0.6 615,043 - IAI46_02875 0.85 +0.1 615,043 - IAI46_02875 0.85 +0.1 615,065 + IAI46_02875 0.86 -0.8 615,083 + IAI46_02875 0.87 -0.0 615,083 + IAI46_02875 0.87 -1.6 615,084 - IAI46_02875 0.87 -0.7 615,157 + -0.1 615,157 + +1.5 615,158 - +0.5 615,169 + -1.9 615,169 + -2.5 615,170 - +1.0 615,203 + -0.3 615,203 + -0.9 615,204 - -0.5 615,204 - -1.1 615,285 - -0.0 615,305 + -0.2 615,320 + -0.5 615,320 + +1.8 615,320 + -0.6 615,321 - +0.3 615,321 - +0.7 615,321 - +0.9 615,321 - +0.2 615,322 + -1.0 615,322 + +1.3 615,323 - +0.9 615,323 - -0.1 615,344 - +0.1 615,350 + -0.4 615,396 - -0.1 615,423 + -0.5 615,423 + +0.6 615,423 + +1.3 615,423 + +1.9 615,423 + +0.7 615,424 - +0.3 615,424 - +0.5 615,424 - +0.7 615,424 - +1.2 615,424 - -0.5 615,430 + -0.1 615,432 + -1.5 615,432 + -0.5 615,432 + +0.2 615,436 + -0.2 615,437 - -0.6 615,437 - +0.1 615,451 + -0.3 615,465 - -0.4 615,487 + +0.8 615,517 + +0.4 615,538 + -1.0 615,542 - +0.5 615,548 - +0.6 615,548 - -2.0 615,557 - -0.7 615,630 - +1.4 615,681 + +0.2 615,707 + +0.2 615,707 + -0.9 615,729 - -2.4 615,743 - -1.8 615,743 - +1.3 615,743 - +1.4 615,801 - -0.8 615,902 + IAI46_02880 0.13 +0.9 615,903 - IAI46_02880 0.14 +0.1 615,903 - IAI46_02880 0.14 +0.0 615,936 - IAI46_02880 0.19 +0.2 615,981 + IAI46_02880 0.26 +0.0 615,981 + IAI46_02880 0.26 +0.4 615,982 - IAI46_02880 0.27 +0.3 615,982 - IAI46_02880 0.27 +0.4 615,982 - IAI46_02880 0.27 -1.1 616,043 + IAI46_02880 0.36 +0.5 616,044 - IAI46_02880 0.37 -0.5 616,055 + IAI46_02880 0.38 +0.1 616,056 - IAI46_02880 0.39 -0.7 616,056 - IAI46_02880 0.39 +0.0 616,079 + IAI46_02880 0.42 +0.3 616,218 + IAI46_02880 0.65 +0.5 616,218 + IAI46_02880 0.65 +0.3 616,219 - IAI46_02880 0.65 +0.4 616,219 - IAI46_02880 0.65 -0.2 616,219 - IAI46_02880 0.65 +0.9 616,219 - IAI46_02880 0.65 +0.9
Or see this region's nucleotide sequence