Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02405 and IAI46_02410 are separated by 119 nucleotides IAI46_02410 and IAI46_02415 are separated by 445 nucleotides IAI46_02415 and IAI46_02420 are separated by 117 nucleotides
IAI46_02405: IAI46_02405 - DEAD/DEAH box helicase family protein, at 511,782 to 515,195
_02405
IAI46_02410: IAI46_02410 - hypothetical protein, at 515,315 to 515,647
_02410
IAI46_02415: IAI46_02415 - hypothetical protein, at 516,093 to 516,701
_02415
IAI46_02420: IAI46_02420 - DNA cytosine methyltransferase, at 516,819 to 517,979
_02420
Position (kb) 516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 515.114 kb on + strand at 515.115 kb on - strand at 515.115 kb on - strand at 515.115 kb on - strand at 515.115 kb on - strand at 515.116 kb on + strand at 515.116 kb on + strand at 515.129 kb on + strand at 515.129 kb on + strand at 515.129 kb on + strand at 515.130 kb on - strand at 515.130 kb on - strand at 515.146 kb on - strand at 515.208 kb on + strand at 515.208 kb on + strand at 515.208 kb on + strand at 515.208 kb on + strand at 515.208 kb on + strand at 515.209 kb on - strand at 515.211 kb on - strand at 515.275 kb on + strand at 515.276 kb on - strand at 515.276 kb on - strand at 515.505 kb on - strand, within IAI46_02410 at 515.508 kb on + strand, within IAI46_02410 at 515.555 kb on + strand, within IAI46_02410 at 515.556 kb on - strand, within IAI46_02410 at 516.239 kb on - strand, within IAI46_02415 at 516.553 kb on + strand, within IAI46_02415 at 516.652 kb on + strand at 516.652 kb on + strand at 516.652 kb on + strand at 516.653 kb on - strand at 516.692 kb on + strand at 516.699 kb on + strand at 516.699 kb on + strand at 516.731 kb on - strand at 516.783 kb on + strand at 516.791 kb on + strand at 516.926 kb on + strand at 516.927 kb on - strand at 516.927 kb on - strand at 516.930 kb on + strand at 516.930 kb on + strand at 516.931 kb on - strand at 516.931 kb on - strand at 516.931 kb on - strand at 517.561 kb on + strand, within IAI46_02420 at 517.561 kb on + strand, within IAI46_02420 at 517.562 kb on - strand, within IAI46_02420 at 517.619 kb on + strand, within IAI46_02420 at 517.665 kb on + strand, within IAI46_02420
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 515,114 + -0.3 515,115 - +1.1 515,115 - +0.8 515,115 - +2.0 515,115 - +1.0 515,116 + -0.4 515,116 + -1.1 515,129 + +1.3 515,129 + -0.1 515,129 + +1.0 515,130 - +1.1 515,130 - +0.9 515,146 - +0.6 515,208 + -1.7 515,208 + +0.7 515,208 + +1.1 515,208 + +0.4 515,208 + +0.4 515,209 - +0.3 515,211 - +0.8 515,275 + +0.8 515,276 - -1.4 515,276 - +0.4 515,505 - IAI46_02410 0.57 +0.0 515,508 + IAI46_02410 0.58 +1.5 515,555 + IAI46_02410 0.72 -0.0 515,556 - IAI46_02410 0.72 +0.4 516,239 - IAI46_02415 0.24 -0.3 516,553 + IAI46_02415 0.76 -0.5 516,652 + +0.4 516,652 + -0.4 516,652 + +0.6 516,653 - +0.2 516,692 + +0.5 516,699 + +0.6 516,699 + +0.0 516,731 - +0.8 516,783 + +0.4 516,791 + +0.0 516,926 + -1.3 516,927 - +0.6 516,927 - -2.0 516,930 + +0.4 516,930 + +0.0 516,931 - -0.3 516,931 - +1.3 516,931 - -0.1 517,561 + IAI46_02420 0.64 -0.3 517,561 + IAI46_02420 0.64 +0.9 517,562 - IAI46_02420 0.64 +0.9 517,619 + IAI46_02420 0.69 +0.4 517,665 + IAI46_02420 0.73 +2.0
Or see this region's nucleotide sequence