Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02155 and IAI46_02160 are separated by 334 nucleotides IAI46_02160 and IAI46_02165 are separated by 90 nucleotides IAI46_02165 and IAI46_02170 overlap by 4 nucleotides IAI46_02170 and IAI46_02175 are separated by 135 nucleotides
IAI46_02155: IAI46_02155 - PTS trehalose transporter subunit IIBC, at 456,954 to 458,369
_02155
IAI46_02160: IAI46_02160 - Exc2 family lipoprotein, at 458,704 to 459,117
_02160
IAI46_02165: IAI46_02165 - colicin-D, at 459,208 to 459,471
_02165
IAI46_02170: IAI46_02170 - S-type pyocin domain-containing protein, at 459,468 to 460,076
_02170
IAI46_02175: IAI46_02175 - colicin-D, at 460,212 to 460,478
_02175
Position (kb) 459
460 Strain fitness (log2 ratio) -1
0
1
2
3 at 458.370 kb on + strand at 458.370 kb on + strand at 458.371 kb on - strand at 458.373 kb on + strand at 458.373 kb on + strand at 458.373 kb on + strand at 458.374 kb on - strand at 458.374 kb on - strand at 458.374 kb on - strand at 458.374 kb on - strand at 458.377 kb on + strand at 458.378 kb on - strand at 458.378 kb on - strand at 458.378 kb on - strand at 458.378 kb on - strand at 458.389 kb on + strand at 458.390 kb on - strand at 458.555 kb on - strand at 458.557 kb on + strand at 458.557 kb on + strand at 458.558 kb on - strand at 458.560 kb on + strand at 458.561 kb on - strand at 458.586 kb on - strand at 458.588 kb on - strand at 458.588 kb on - strand at 458.599 kb on + strand at 458.657 kb on + strand at 458.657 kb on + strand at 458.658 kb on - strand at 458.663 kb on - strand at 458.664 kb on + strand at 458.665 kb on - strand at 458.665 kb on - strand at 458.665 kb on - strand at 458.673 kb on + strand at 458.673 kb on + strand at 458.674 kb on - strand at 458.677 kb on - strand at 458.763 kb on + strand, within IAI46_02160 at 458.764 kb on - strand, within IAI46_02160 at 458.764 kb on - strand, within IAI46_02160 at 458.809 kb on + strand, within IAI46_02160 at 458.810 kb on - strand, within IAI46_02160 at 458.877 kb on + strand, within IAI46_02160 at 458.900 kb on - strand, within IAI46_02160 at 458.900 kb on - strand, within IAI46_02160 at 458.965 kb on + strand, within IAI46_02160 at 458.965 kb on + strand, within IAI46_02160 at 458.966 kb on - strand, within IAI46_02160 at 458.966 kb on - strand, within IAI46_02160 at 458.966 kb on - strand, within IAI46_02160 at 459.015 kb on + strand, within IAI46_02160 at 459.016 kb on - strand, within IAI46_02160 at 459.028 kb on + strand, within IAI46_02160 at 459.088 kb on + strand at 459.088 kb on + strand at 459.089 kb on - strand at 459.101 kb on - strand at 459.124 kb on + strand at 459.128 kb on + strand at 459.134 kb on - strand at 459.136 kb on + strand at 459.137 kb on - strand at 459.158 kb on - strand at 459.302 kb on + strand, within IAI46_02165 at 459.319 kb on - strand, within IAI46_02165 at 459.323 kb on - strand, within IAI46_02165 at 459.635 kb on + strand, within IAI46_02170 at 460.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 458,370 + +0.1 458,370 + -0.8 458,371 - +0.1 458,373 + -0.2 458,373 + -0.1 458,373 + -0.3 458,374 - -0.8 458,374 - -0.9 458,374 - +0.1 458,374 - +1.0 458,377 + +0.3 458,378 - +0.2 458,378 - +0.5 458,378 - +0.5 458,378 - -0.9 458,389 + +0.1 458,390 - +0.4 458,555 - +2.7 458,557 + -0.5 458,557 + -0.0 458,558 - -1.0 458,560 + +0.3 458,561 - -0.3 458,586 - -0.4 458,588 - +0.5 458,588 - +1.6 458,599 + -0.2 458,657 + -1.2 458,657 + +0.8 458,658 - -0.4 458,663 - +0.5 458,664 + +0.7 458,665 - -1.2 458,665 - +0.2 458,665 - +0.3 458,673 + +0.4 458,673 + -0.2 458,674 - +0.6 458,677 - +0.9 458,763 + IAI46_02160 0.14 +0.1 458,764 - IAI46_02160 0.14 -0.4 458,764 - IAI46_02160 0.14 +0.8 458,809 + IAI46_02160 0.25 +0.7 458,810 - IAI46_02160 0.26 +0.8 458,877 + IAI46_02160 0.42 +0.5 458,900 - IAI46_02160 0.47 -0.2 458,900 - IAI46_02160 0.47 -0.1 458,965 + IAI46_02160 0.63 +0.3 458,965 + IAI46_02160 0.63 +0.2 458,966 - IAI46_02160 0.63 +0.1 458,966 - IAI46_02160 0.63 +1.1 458,966 - IAI46_02160 0.63 +0.5 459,015 + IAI46_02160 0.75 +0.2 459,016 - IAI46_02160 0.75 +0.6 459,028 + IAI46_02160 0.78 +0.2 459,088 + -0.1 459,088 + -0.1 459,089 - +0.7 459,101 - +0.1 459,124 + +3.4 459,128 + -0.4 459,134 - +0.3 459,136 + +0.1 459,137 - +1.0 459,158 - +1.3 459,302 + IAI46_02165 0.36 +0.3 459,319 - IAI46_02165 0.42 +0.2 459,323 - IAI46_02165 0.44 +0.6 459,635 + IAI46_02170 0.27 +0.6 460,189 + +0.6
Or see this region's nucleotide sequence