Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02135 and IAI46_02140 are separated by 283 nucleotides IAI46_02140 and IAI46_02145 are separated by 104 nucleotides IAI46_02145 and IAI46_02150 are separated by 29 nucleotides
IAI46_02135: IAI46_02135 - anaerobic ribonucleoside-triphosphate reductase, at 451,244 to 453,382
_02135
IAI46_02140: IAI46_02140 - LysR family transcriptional regulator, at 453,666 to 454,574
_02140
IAI46_02145: IAI46_02145 - NAD(P)H-dependent oxidoreductase, at 454,679 to 455,203
_02145
IAI46_02150: IAI46_02150 - alpha,alpha-phosphotrehalase, at 455,233 to 456,897
_02150
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 452.725 kb on - strand, within IAI46_02135 at 452.728 kb on + strand, within IAI46_02135 at 452.728 kb on + strand, within IAI46_02135 at 452.886 kb on + strand, within IAI46_02135 at 452.886 kb on + strand, within IAI46_02135 at 452.964 kb on + strand, within IAI46_02135 at 453.026 kb on - strand, within IAI46_02135 at 453.026 kb on - strand, within IAI46_02135 at 453.051 kb on - strand, within IAI46_02135 at 453.132 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.140 kb on - strand, within IAI46_02135 at 453.140 kb on - strand, within IAI46_02135 at 453.141 kb on + strand, within IAI46_02135 at 453.141 kb on + strand, within IAI46_02135 at 453.142 kb on - strand, within IAI46_02135 at 453.142 kb on - strand, within IAI46_02135 at 453.233 kb on + strand at 453.233 kb on + strand at 453.233 kb on + strand at 453.234 kb on - strand at 453.234 kb on - strand at 453.248 kb on + strand at 453.344 kb on + strand at 453.344 kb on + strand at 453.365 kb on - strand at 453.372 kb on - strand at 453.389 kb on - strand at 453.538 kb on + strand at 453.538 kb on + strand at 453.539 kb on - strand at 453.539 kb on - strand at 453.541 kb on + strand at 453.541 kb on + strand at 453.541 kb on + strand at 453.543 kb on + strand at 453.543 kb on + strand at 453.544 kb on - strand at 453.545 kb on + strand at 453.565 kb on - strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.573 kb on - strand at 453.573 kb on - strand at 453.573 kb on - strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.576 kb on + strand at 453.576 kb on + strand at 453.576 kb on + strand at 453.577 kb on - strand at 453.577 kb on - strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.579 kb on - strand at 453.632 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.745 kb on + strand at 453.745 kb on + strand at 453.746 kb on - strand at 453.746 kb on - strand at 453.748 kb on + strand at 453.748 kb on + strand at 453.748 kb on + strand at 453.749 kb on - strand at 453.829 kb on + strand, within IAI46_02140 at 453.961 kb on - strand, within IAI46_02140 at 453.961 kb on - strand, within IAI46_02140 at 453.983 kb on + strand, within IAI46_02140 at 454.001 kb on + strand, within IAI46_02140 at 454.001 kb on + strand, within IAI46_02140 at 454.002 kb on - strand, within IAI46_02140 at 454.002 kb on - strand, within IAI46_02140 at 454.051 kb on + strand, within IAI46_02140 at 454.376 kb on + strand, within IAI46_02140 at 454.377 kb on - strand, within IAI46_02140 at 454.409 kb on + strand, within IAI46_02140 at 454.409 kb on + strand, within IAI46_02140 at 454.410 kb on - strand, within IAI46_02140 at 454.515 kb on + strand at 454.515 kb on + strand at 454.574 kb on + strand at 454.574 kb on + strand at 454.574 kb on + strand at 454.575 kb on - strand at 454.575 kb on - strand at 454.620 kb on + strand at 454.620 kb on + strand at 454.620 kb on + strand at 454.809 kb on - strand, within IAI46_02145 at 454.881 kb on - strand, within IAI46_02145 at 454.881 kb on - strand, within IAI46_02145 at 454.886 kb on + strand, within IAI46_02145 at 454.930 kb on - strand, within IAI46_02145 at 455.021 kb on + strand, within IAI46_02145 at 455.021 kb on + strand, within IAI46_02145 at 455.024 kb on - strand, within IAI46_02145 at 455.024 kb on - strand, within IAI46_02145 at 455.036 kb on + strand, within IAI46_02145 at 455.037 kb on - strand, within IAI46_02145 at 455.037 kb on - strand, within IAI46_02145 at 455.037 kb on - strand, within IAI46_02145 at 455.039 kb on - strand, within IAI46_02145 at 455.105 kb on + strand, within IAI46_02145 at 455.105 kb on + strand, within IAI46_02145 at 455.106 kb on - strand, within IAI46_02145 at 455.141 kb on - strand, within IAI46_02145 at 455.234 kb on + strand at 455.235 kb on - strand at 455.242 kb on + strand at 455.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 452,725 - IAI46_02135 0.69 -0.1 452,728 + IAI46_02135 0.69 -0.8 452,728 + IAI46_02135 0.69 -1.1 452,886 + IAI46_02135 0.77 -0.7 452,886 + IAI46_02135 0.77 -1.3 452,964 + IAI46_02135 0.80 -0.7 453,026 - IAI46_02135 0.83 +0.2 453,026 - IAI46_02135 0.83 -1.5 453,051 - IAI46_02135 0.84 -0.0 453,132 + IAI46_02135 0.88 -1.1 453,139 + IAI46_02135 0.89 -1.6 453,139 + IAI46_02135 0.89 -1.1 453,139 + IAI46_02135 0.89 -0.1 453,139 + IAI46_02135 0.89 -0.9 453,140 - IAI46_02135 0.89 +0.7 453,140 - IAI46_02135 0.89 -2.0 453,141 + IAI46_02135 0.89 -0.5 453,141 + IAI46_02135 0.89 -0.5 453,142 - IAI46_02135 0.89 -2.6 453,142 - IAI46_02135 0.89 -0.9 453,233 + -0.5 453,233 + +0.4 453,233 + -0.4 453,234 - -0.9 453,234 - -2.8 453,248 + -0.6 453,344 + -0.7 453,344 + -1.2 453,365 - +0.2 453,372 - -1.4 453,389 - +0.0 453,538 + -0.5 453,538 + +0.1 453,539 - +0.3 453,539 - +1.0 453,541 + +0.1 453,541 + -0.8 453,541 + -1.2 453,543 + -1.1 453,543 + +0.3 453,544 - +1.2 453,545 + +0.4 453,565 - -0.1 453,572 + -0.1 453,572 + -0.9 453,572 + -1.3 453,572 + -3.3 453,572 + -1.2 453,573 - -0.5 453,573 - +0.1 453,573 - +0.4 453,574 + -0.8 453,574 + -1.8 453,574 + -0.7 453,574 + -0.2 453,574 + -1.5 453,574 + -1.4 453,575 - +0.5 453,575 - -0.2 453,575 - -0.8 453,575 - +1.5 453,575 - -0.8 453,576 + +0.3 453,576 + -0.1 453,576 + -0.1 453,577 - -0.1 453,577 - +1.3 453,578 + -1.2 453,578 + -1.1 453,578 + -0.1 453,578 + -1.8 453,579 - -0.2 453,632 + -0.4 453,639 + -0.5 453,639 + -0.1 453,639 + -1.7 453,639 + +0.6 453,745 + -0.0 453,745 + +0.3 453,746 - -0.2 453,746 - -1.4 453,748 + +0.5 453,748 + +0.4 453,748 + +0.3 453,749 - -0.2 453,829 + IAI46_02140 0.18 -1.3 453,961 - IAI46_02140 0.32 -0.3 453,961 - IAI46_02140 0.32 +0.4 453,983 + IAI46_02140 0.35 +0.4 454,001 + IAI46_02140 0.37 -0.3 454,001 + IAI46_02140 0.37 -0.1 454,002 - IAI46_02140 0.37 +0.3 454,002 - IAI46_02140 0.37 +0.5 454,051 + IAI46_02140 0.42 -0.1 454,376 + IAI46_02140 0.78 +0.5 454,377 - IAI46_02140 0.78 +0.9 454,409 + IAI46_02140 0.82 +0.8 454,409 + IAI46_02140 0.82 -0.0 454,410 - IAI46_02140 0.82 -0.3 454,515 + +0.1 454,515 + -0.9 454,574 + +0.5 454,574 + -0.8 454,574 + +0.2 454,575 - -1.0 454,575 - +0.2 454,620 + -1.2 454,620 + -0.3 454,620 + +0.3 454,809 - IAI46_02145 0.25 +0.4 454,881 - IAI46_02145 0.38 -0.4 454,881 - IAI46_02145 0.38 +0.5 454,886 + IAI46_02145 0.39 +1.0 454,930 - IAI46_02145 0.48 +0.1 455,021 + IAI46_02145 0.65 -0.6 455,021 + IAI46_02145 0.65 -1.9 455,024 - IAI46_02145 0.66 -0.0 455,024 - IAI46_02145 0.66 +0.4 455,036 + IAI46_02145 0.68 +0.3 455,037 - IAI46_02145 0.68 +0.7 455,037 - IAI46_02145 0.68 -0.3 455,037 - IAI46_02145 0.68 -1.1 455,039 - IAI46_02145 0.69 -0.0 455,105 + IAI46_02145 0.81 +0.1 455,105 + IAI46_02145 0.81 +0.2 455,106 - IAI46_02145 0.81 -1.1 455,141 - IAI46_02145 0.88 +0.2 455,234 + +0.6 455,235 - -0.4 455,242 + +0.2 455,243 - -0.5
Or see this region's nucleotide sequence