Strain Fitness in Serratia liquefaciens MT49 around IAI46_02065

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02055 and IAI46_02060 overlap by 50 nucleotidesIAI46_02060 and IAI46_02065 are separated by 14 nucleotidesIAI46_02065 and IAI46_02070 overlap by 4 nucleotidesIAI46_02070 and IAI46_02075 overlap by 1 nucleotides IAI46_02055: IAI46_02055 - NAD(P)H-binding protein, at 439,715 to 440,353 _02055 IAI46_02060: IAI46_02060 - phosphonate metabolism protein PhnP, at 440,304 to 441,086 _02060 IAI46_02065: IAI46_02065 - acetyltransferase, at 441,101 to 441,703 _02065 IAI46_02070: IAI46_02070 - ribose 1,5-bisphosphokinase, at 441,700 to 442,269 _02070 IAI46_02075: IAI46_02075 - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 442,269 to 443,405 _02075 Position (kb) 441 442Strain fitness (log2 ratio) -2 -1 0 1 2at 440.160 kb on + strand, within IAI46_02055at 440.215 kb on + strand, within IAI46_02055at 440.436 kb on + strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.437 kb on - strand, within IAI46_02060at 440.442 kb on - strand, within IAI46_02060at 440.566 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.612 kb on - strand, within IAI46_02060at 440.645 kb on - strand, within IAI46_02060at 440.797 kb on + strand, within IAI46_02060at 440.839 kb on - strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.847 kb on + strand, within IAI46_02060at 440.848 kb on - strand, within IAI46_02060at 441.105 kb on - strandat 441.105 kb on - strandat 441.105 kb on - strandat 441.108 kb on + strandat 441.109 kb on - strandat 441.109 kb on - strandat 441.267 kb on + strand, within IAI46_02065at 441.268 kb on - strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.438 kb on + strand, within IAI46_02065at 441.439 kb on - strand, within IAI46_02065at 441.476 kb on - strand, within IAI46_02065at 441.483 kb on + strand, within IAI46_02065at 441.483 kb on + strand, within IAI46_02065at 441.508 kb on + strand, within IAI46_02065at 441.516 kb on + strand, within IAI46_02065at 441.516 kb on + strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.517 kb on - strand, within IAI46_02065at 441.577 kb on + strand, within IAI46_02065at 441.578 kb on - strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.579 kb on + strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.580 kb on - strand, within IAI46_02065at 441.585 kb on + strand, within IAI46_02065at 441.586 kb on - strand, within IAI46_02065at 441.632 kb on + strand, within IAI46_02065at 441.632 kb on + strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.633 kb on - strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.636 kb on + strand, within IAI46_02065at 441.637 kb on - strand, within IAI46_02065at 441.645 kb on - strandat 441.658 kb on + strandat 441.751 kb on + strandat 441.752 kb on - strandat 441.903 kb on + strand, within IAI46_02070at 441.903 kb on + strand, within IAI46_02070at 441.904 kb on - strand, within IAI46_02070at 441.910 kb on - strand, within IAI46_02070at 442.043 kb on + strand, within IAI46_02070at 442.043 kb on + strand, within IAI46_02070at 442.044 kb on - strand, within IAI46_02070at 442.126 kb on - strand, within IAI46_02070at 442.126 kb on - strand, within IAI46_02070at 442.161 kb on + strand, within IAI46_02070at 442.161 kb on + strand, within IAI46_02070at 442.161 kb on + strand, within IAI46_02070at 442.161 kb on + strand, within IAI46_02070at 442.162 kb on - strand, within IAI46_02070at 442.163 kb on + strand, within IAI46_02070at 442.163 kb on + strand, within IAI46_02070at 442.163 kb on + strand, within IAI46_02070at 442.164 kb on - strand, within IAI46_02070at 442.164 kb on - strand, within IAI46_02070at 442.164 kb on - strand, within IAI46_02070at 442.253 kb on + strandat 442.257 kb on + strandat 442.257 kb on + strandat 442.257 kb on + strandat 442.257 kb on + strandat 442.257 kb on + strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.258 kb on - strandat 442.309 kb on + strandat 442.309 kb on + strandat 442.309 kb on + strandat 442.310 kb on - strandat 442.310 kb on - strandat 442.310 kb on - strandat 442.310 kb on - strandat 442.313 kb on + strandat 442.313 kb on + strandat 442.313 kb on + strandat 442.313 kb on + strandat 442.313 kb on + strandat 442.313 kb on + strandat 442.314 kb on - strandat 442.314 kb on - strandat 442.314 kb on - strandat 442.314 kb on - strandat 442.467 kb on - strand, within IAI46_02075at 442.501 kb on + strand, within IAI46_02075at 442.586 kb on + strand, within IAI46_02075at 442.587 kb on - strand, within IAI46_02075at 442.612 kb on - strand, within IAI46_02075at 442.612 kb on - strand, within IAI46_02075at 442.612 kb on - strand, within IAI46_02075at 442.612 kb on - strand, within IAI46_02075at 442.695 kb on + strand, within IAI46_02075

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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440,160 + IAI46_02055 0.70 -0.1
440,215 + IAI46_02055 0.78 +2.3
440,436 + IAI46_02060 0.17 +0.3
440,437 - IAI46_02060 0.17 -0.7
440,437 - IAI46_02060 0.17 +0.7
440,442 - IAI46_02060 0.18 -0.3
440,566 - IAI46_02060 0.33 +0.6
440,612 - IAI46_02060 0.39 -0.4
440,612 - IAI46_02060 0.39 -0.6
440,645 - IAI46_02060 0.44 +0.8
440,797 + IAI46_02060 0.63 -1.2
440,839 - IAI46_02060 0.68 -0.1
440,847 + IAI46_02060 0.69 +0.1
440,847 + IAI46_02060 0.69 -0.3
440,848 - IAI46_02060 0.69 +0.3
441,105 - +0.2
441,105 - -0.6
441,105 - +0.5
441,108 + -0.5
441,109 - +0.2
441,109 - +1.4
441,267 + IAI46_02065 0.28 +1.3
441,268 - IAI46_02065 0.28 +1.4
441,438 + IAI46_02065 0.56 -0.6
441,438 + IAI46_02065 0.56 -0.4
441,438 + IAI46_02065 0.56 -1.7
441,439 - IAI46_02065 0.56 -0.0
441,476 - IAI46_02065 0.62 -0.3
441,483 + IAI46_02065 0.63 -0.4
441,483 + IAI46_02065 0.63 -0.5
441,508 + IAI46_02065 0.67 +0.4
441,516 + IAI46_02065 0.69 +0.4
441,516 + IAI46_02065 0.69 +0.3
441,517 - IAI46_02065 0.69 +0.1
441,517 - IAI46_02065 0.69 -0.4
441,517 - IAI46_02065 0.69 +0.0
441,517 - IAI46_02065 0.69 +0.3
441,577 + IAI46_02065 0.79 -2.3
441,578 - IAI46_02065 0.79 +0.6
441,579 + IAI46_02065 0.79 +0.8
441,579 + IAI46_02065 0.79 +1.1
441,579 + IAI46_02065 0.79 +0.2
441,580 - IAI46_02065 0.79 +0.1
441,580 - IAI46_02065 0.79 -1.0
441,580 - IAI46_02065 0.79 +0.3
441,580 - IAI46_02065 0.79 +0.8
441,580 - IAI46_02065 0.79 -0.5
441,580 - IAI46_02065 0.79 +0.5
441,580 - IAI46_02065 0.79 -1.6
441,580 - IAI46_02065 0.79 -0.2
441,585 + IAI46_02065 0.80 -0.1
441,586 - IAI46_02065 0.80 -0.2
441,632 + IAI46_02065 0.88 +0.4
441,632 + IAI46_02065 0.88 +0.3
441,633 - IAI46_02065 0.88 -0.1
441,633 - IAI46_02065 0.88 +1.3
441,633 - IAI46_02065 0.88 +0.9
441,633 - IAI46_02065 0.88 +0.1
441,633 - IAI46_02065 0.88 -1.3
441,633 - IAI46_02065 0.88 +0.0
441,633 - IAI46_02065 0.88 +0.5
441,636 + IAI46_02065 0.89 -0.2
441,636 + IAI46_02065 0.89 +0.4
441,636 + IAI46_02065 0.89 +0.4
441,636 + IAI46_02065 0.89 -0.3
441,637 - IAI46_02065 0.89 +0.5
441,645 - +0.1
441,658 + -0.2
441,751 + -0.1
441,752 - -2.0
441,903 + IAI46_02070 0.36 -0.5
441,903 + IAI46_02070 0.36 +0.8
441,904 - IAI46_02070 0.36 -0.0
441,910 - IAI46_02070 0.37 -1.1
442,043 + IAI46_02070 0.60 -0.5
442,043 + IAI46_02070 0.60 +0.1
442,044 - IAI46_02070 0.60 +0.1
442,126 - IAI46_02070 0.75 -0.3
442,126 - IAI46_02070 0.75 +1.6
442,161 + IAI46_02070 0.81 +0.1
442,161 + IAI46_02070 0.81 -0.6
442,161 + IAI46_02070 0.81 +0.0
442,161 + IAI46_02070 0.81 +0.9
442,162 - IAI46_02070 0.81 -0.1
442,163 + IAI46_02070 0.81 -0.1
442,163 + IAI46_02070 0.81 +0.7
442,163 + IAI46_02070 0.81 -0.1
442,164 - IAI46_02070 0.81 +1.4
442,164 - IAI46_02070 0.81 -1.0
442,164 - IAI46_02070 0.81 -0.3
442,253 + -0.3
442,257 + +0.4
442,257 + +0.0
442,257 + +0.7
442,257 + -0.7
442,257 + +0.2
442,258 - +1.5
442,258 - -0.8
442,258 - +0.7
442,258 - -0.3
442,258 - +1.2
442,258 - -0.4
442,258 - -0.4
442,258 - +1.4
442,309 + -0.5
442,309 + +0.1
442,309 + +0.4
442,310 - +0.6
442,310 - -0.3
442,310 - -0.6
442,310 - +1.2
442,313 + +2.2
442,313 + -0.1
442,313 + -1.2
442,313 + +0.3
442,313 + -0.5
442,313 + +0.4
442,314 - +0.6
442,314 - -0.1
442,314 - +0.6
442,314 - +0.8
442,467 - IAI46_02075 0.17 -0.0
442,501 + IAI46_02075 0.20 +0.2
442,586 + IAI46_02075 0.28 -2.0
442,587 - IAI46_02075 0.28 -0.2
442,612 - IAI46_02075 0.30 -0.5
442,612 - IAI46_02075 0.30 -0.7
442,612 - IAI46_02075 0.30 +0.9
442,612 - IAI46_02075 0.30 -0.4
442,695 + IAI46_02075 0.37 -1.2

Or see this region's nucleotide sequence