Strain Fitness in Serratia liquefaciens MT49 around IAI46_02040

Experiment: Nickel (II) chloride 80 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02035 and IAI46_02040 are separated by 63 nucleotidesIAI46_02040 and IAI46_02045 are separated by 269 nucleotidesIAI46_02045 and IAI46_02050 are separated by 432 nucleotides IAI46_02035: IAI46_02035 - putrescine-ornithine antiporter, at 434,884 to 436,200 _02035 IAI46_02040: IAI46_02040 - ornithine decarboxylase SpeF, at 436,264 to 438,426 _02040 IAI46_02045: IAI46_02045 - DUF2618 domain-containing protein, at 438,696 to 438,800 _02045 IAI46_02050: IAI46_02050 - YhbP family protein, at 439,233 to 439,667 _02050 Position (kb) 436 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1at 435.307 kb on + strand, within IAI46_02035at 435.402 kb on + strand, within IAI46_02035at 435.403 kb on - strand, within IAI46_02035at 435.451 kb on - strand, within IAI46_02035at 435.458 kb on - strand, within IAI46_02035at 435.458 kb on - strand, within IAI46_02035at 435.460 kb on + strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.461 kb on - strand, within IAI46_02035at 435.489 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.491 kb on + strand, within IAI46_02035at 435.492 kb on - strand, within IAI46_02035at 435.492 kb on - strand, within IAI46_02035at 435.540 kb on + strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.541 kb on - strand, within IAI46_02035at 435.675 kb on - strand, within IAI46_02035at 435.675 kb on - strand, within IAI46_02035at 435.828 kb on + strand, within IAI46_02035at 435.829 kb on - strand, within IAI46_02035at 435.930 kb on - strand, within IAI46_02035at 435.933 kb on + strand, within IAI46_02035at 435.935 kb on + strand, within IAI46_02035at 435.935 kb on + strand, within IAI46_02035at 435.936 kb on - strand, within IAI46_02035at 435.945 kb on + strand, within IAI46_02035at 435.946 kb on - strand, within IAI46_02035at 435.946 kb on - strand, within IAI46_02035at 435.972 kb on - strand, within IAI46_02035at 435.972 kb on - strand, within IAI46_02035at 435.980 kb on + strand, within IAI46_02035at 435.980 kb on + strand, within IAI46_02035at 435.981 kb on - strand, within IAI46_02035at 435.981 kb on - strand, within IAI46_02035at 436.080 kb on + strandat 436.081 kb on - strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.119 kb on + strandat 436.120 kb on - strandat 436.217 kb on - strandat 436.240 kb on - strandat 436.242 kb on + strandat 436.266 kb on - strandat 436.270 kb on - strandat 436.281 kb on - strandat 436.322 kb on + strandat 436.323 kb on - strandat 436.363 kb on - strandat 436.388 kb on + strandat 436.389 kb on - strandat 436.432 kb on + strandat 436.449 kb on - strandat 436.454 kb on - strandat 436.454 kb on - strandat 436.454 kb on - strandat 436.603 kb on - strand, within IAI46_02040at 436.610 kb on + strand, within IAI46_02040at 436.620 kb on - strand, within IAI46_02040at 436.659 kb on - strand, within IAI46_02040at 436.668 kb on - strand, within IAI46_02040at 436.686 kb on + strand, within IAI46_02040at 436.687 kb on - strand, within IAI46_02040at 436.687 kb on - strand, within IAI46_02040at 436.688 kb on + strand, within IAI46_02040at 436.689 kb on - strand, within IAI46_02040at 436.714 kb on + strand, within IAI46_02040at 436.715 kb on - strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.840 kb on + strand, within IAI46_02040at 436.841 kb on - strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.859 kb on + strand, within IAI46_02040at 436.860 kb on - strand, within IAI46_02040at 436.898 kb on + strand, within IAI46_02040at 436.899 kb on - strand, within IAI46_02040at 437.054 kb on + strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.055 kb on - strand, within IAI46_02040at 437.131 kb on - strand, within IAI46_02040at 437.232 kb on - strand, within IAI46_02040at 437.259 kb on + strand, within IAI46_02040at 437.260 kb on - strand, within IAI46_02040at 437.272 kb on - strand, within IAI46_02040at 437.419 kb on + strand, within IAI46_02040at 437.419 kb on + strand, within IAI46_02040at 437.459 kb on - strand, within IAI46_02040at 437.460 kb on - strand, within IAI46_02040at 437.489 kb on + strand, within IAI46_02040at 437.489 kb on + strand, within IAI46_02040at 437.489 kb on + strand, within IAI46_02040at 437.490 kb on - strand, within IAI46_02040at 437.490 kb on - strand, within IAI46_02040at 437.490 kb on - strand, within IAI46_02040at 437.535 kb on - strand, within IAI46_02040at 437.535 kb on - strand, within IAI46_02040at 437.549 kb on + strand, within IAI46_02040at 437.549 kb on + strand, within IAI46_02040at 437.550 kb on - strand, within IAI46_02040at 437.550 kb on - strand, within IAI46_02040at 437.550 kb on - strand, within IAI46_02040at 437.550 kb on - strand, within IAI46_02040at 437.558 kb on - strand, within IAI46_02040at 437.558 kb on - strand, within IAI46_02040at 437.611 kb on + strand, within IAI46_02040at 437.612 kb on - strand, within IAI46_02040at 437.633 kb on - strand, within IAI46_02040at 437.633 kb on - strand, within IAI46_02040at 437.633 kb on - strand, within IAI46_02040at 437.637 kb on - strand, within IAI46_02040at 437.665 kb on - strand, within IAI46_02040at 437.705 kb on + strand, within IAI46_02040at 437.755 kb on - strand, within IAI46_02040at 437.761 kb on - strand, within IAI46_02040at 437.761 kb on - strand, within IAI46_02040at 437.763 kb on + strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.764 kb on - strand, within IAI46_02040at 437.779 kb on + strand, within IAI46_02040at 437.779 kb on + strand, within IAI46_02040at 437.795 kb on - strand, within IAI46_02040at 437.849 kb on + strand, within IAI46_02040at 437.850 kb on - strand, within IAI46_02040at 437.856 kb on + strand, within IAI46_02040at 437.920 kb on + strand, within IAI46_02040at 437.920 kb on + strand, within IAI46_02040at 437.921 kb on - strand, within IAI46_02040at 437.952 kb on + strand, within IAI46_02040at 437.953 kb on - strand, within IAI46_02040at 437.981 kb on - strand, within IAI46_02040at 438.074 kb on + strand, within IAI46_02040at 438.185 kb on - strand, within IAI46_02040at 438.206 kb on - strand, within IAI46_02040at 438.206 kb on - strand, within IAI46_02040at 438.483 kb on + strandat 438.483 kb on + strandat 438.492 kb on - strandat 438.505 kb on - strandat 438.550 kb on - strandat 438.586 kb on + strandat 438.606 kb on - strandat 438.697 kb on + strandat 438.722 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.749 kb on + strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.750 kb on - strand, within IAI46_02045at 438.770 kb on + strand, within IAI46_02045at 438.771 kb on - strand, within IAI46_02045at 438.805 kb on - strandat 438.805 kb on - strandat 438.869 kb on + strandat 438.869 kb on + strandat 438.880 kb on + strandat 438.903 kb on - strandat 438.921 kb on + strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.922 kb on - strandat 438.935 kb on + strandat 438.942 kb on - strandat 438.952 kb on + strandat 438.952 kb on + strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.953 kb on - strandat 438.964 kb on + strandat 438.980 kb on - strandat 439.049 kb on + strandat 439.050 kb on - strandat 439.051 kb on + strandat 439.052 kb on - strandat 439.052 kb on - strandat 439.088 kb on - strandat 439.089 kb on + strandat 439.096 kb on - strandat 439.096 kb on - strandat 439.239 kb on - strandat 439.259 kb on + strandat 439.260 kb on - strandat 439.260 kb on - strandat 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.288 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.319 kb on + strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.320 kb on - strand, within IAI46_02050at 439.342 kb on - strand, within IAI46_02050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
remove
435,307 + IAI46_02035 0.32 -0.0
435,402 + IAI46_02035 0.39 +0.2
435,403 - IAI46_02035 0.39 +0.6
435,451 - IAI46_02035 0.43 -0.2
435,458 - IAI46_02035 0.44 -0.7
435,458 - IAI46_02035 0.44 +0.1
435,460 + IAI46_02035 0.44 -0.2
435,461 - IAI46_02035 0.44 +0.1
435,461 - IAI46_02035 0.44 -1.1
435,461 - IAI46_02035 0.44 -1.2
435,461 - IAI46_02035 0.44 -0.3
435,489 + IAI46_02035 0.46 -0.6
435,491 + IAI46_02035 0.46 -0.3
435,491 + IAI46_02035 0.46 +0.0
435,491 + IAI46_02035 0.46 -0.3
435,491 + IAI46_02035 0.46 -1.0
435,492 - IAI46_02035 0.46 +0.3
435,492 - IAI46_02035 0.46 -0.6
435,540 + IAI46_02035 0.50 +1.0
435,541 - IAI46_02035 0.50 +0.2
435,541 - IAI46_02035 0.50 -0.4
435,541 - IAI46_02035 0.50 +0.4
435,541 - IAI46_02035 0.50 +0.1
435,541 - IAI46_02035 0.50 +0.9
435,675 - IAI46_02035 0.60 +0.3
435,675 - IAI46_02035 0.60 +0.2
435,828 + IAI46_02035 0.72 -0.2
435,829 - IAI46_02035 0.72 +0.7
435,930 - IAI46_02035 0.79 -0.0
435,933 + IAI46_02035 0.80 +1.0
435,935 + IAI46_02035 0.80 -0.7
435,935 + IAI46_02035 0.80 -0.5
435,936 - IAI46_02035 0.80 +1.2
435,945 + IAI46_02035 0.81 -2.0
435,946 - IAI46_02035 0.81 +0.8
435,946 - IAI46_02035 0.81 -0.2
435,972 - IAI46_02035 0.83 +0.2
435,972 - IAI46_02035 0.83 +0.5
435,980 + IAI46_02035 0.83 -0.3
435,980 + IAI46_02035 0.83 -0.2
435,981 - IAI46_02035 0.83 -0.5
435,981 - IAI46_02035 0.83 -0.2
436,080 + -0.4
436,081 - +0.0
436,119 + -0.0
436,119 + -0.3
436,119 + +0.4
436,119 + +0.1
436,119 + +1.7
436,120 - +0.7
436,217 - +1.4
436,240 - -0.3
436,242 + +0.1
436,266 - +0.2
436,270 - +0.5
436,281 - -0.3
436,322 + -0.2
436,323 - +0.0
436,363 - +0.3
436,388 + -0.3
436,389 - -0.2
436,432 + +0.7
436,449 - +0.3
436,454 - -0.1
436,454 - +1.0
436,454 - +0.4
436,603 - IAI46_02040 0.16 -0.6
436,610 + IAI46_02040 0.16 -0.1
436,620 - IAI46_02040 0.16 -0.4
436,659 - IAI46_02040 0.18 +0.4
436,668 - IAI46_02040 0.19 +0.3
436,686 + IAI46_02040 0.20 -1.7
436,687 - IAI46_02040 0.20 -1.2
436,687 - IAI46_02040 0.20 +1.4
436,688 + IAI46_02040 0.20 -0.3
436,689 - IAI46_02040 0.20 +0.1
436,714 + IAI46_02040 0.21 +0.1
436,715 - IAI46_02040 0.21 +0.1
436,840 + IAI46_02040 0.27 -0.1
436,840 + IAI46_02040 0.27 +0.0
436,840 + IAI46_02040 0.27 -0.1
436,840 + IAI46_02040 0.27 -0.1
436,841 - IAI46_02040 0.27 -0.2
436,859 + IAI46_02040 0.28 -0.2
436,859 + IAI46_02040 0.28 -1.3
436,859 + IAI46_02040 0.28 +1.0
436,860 - IAI46_02040 0.28 +0.8
436,898 + IAI46_02040 0.29 -0.3
436,899 - IAI46_02040 0.29 -0.2
437,054 + IAI46_02040 0.37 +0.3
437,055 - IAI46_02040 0.37 -0.2
437,055 - IAI46_02040 0.37 +1.0
437,055 - IAI46_02040 0.37 +0.1
437,055 - IAI46_02040 0.37 +0.2
437,131 - IAI46_02040 0.40 -0.6
437,232 - IAI46_02040 0.45 -0.7
437,259 + IAI46_02040 0.46 +0.8
437,260 - IAI46_02040 0.46 -1.2
437,272 - IAI46_02040 0.47 +0.5
437,419 + IAI46_02040 0.53 +0.2
437,419 + IAI46_02040 0.53 -0.5
437,459 - IAI46_02040 0.55 +0.8
437,460 - IAI46_02040 0.55 +0.0
437,489 + IAI46_02040 0.57 +1.0
437,489 + IAI46_02040 0.57 +1.0
437,489 + IAI46_02040 0.57 +0.7
437,490 - IAI46_02040 0.57 +0.7
437,490 - IAI46_02040 0.57 +1.2
437,490 - IAI46_02040 0.57 +0.9
437,535 - IAI46_02040 0.59 -0.2
437,535 - IAI46_02040 0.59 -0.2
437,549 + IAI46_02040 0.59 +0.2
437,549 + IAI46_02040 0.59 -0.6
437,550 - IAI46_02040 0.59 +0.3
437,550 - IAI46_02040 0.59 -1.2
437,550 - IAI46_02040 0.59 -1.4
437,550 - IAI46_02040 0.59 -0.3
437,558 - IAI46_02040 0.60 -0.1
437,558 - IAI46_02040 0.60 +0.3
437,611 + IAI46_02040 0.62 -0.1
437,612 - IAI46_02040 0.62 +0.3
437,633 - IAI46_02040 0.63 +0.4
437,633 - IAI46_02040 0.63 +0.1
437,633 - IAI46_02040 0.63 +0.3
437,637 - IAI46_02040 0.63 +0.2
437,665 - IAI46_02040 0.65 -0.5
437,705 + IAI46_02040 0.67 -0.2
437,755 - IAI46_02040 0.69 +0.0
437,761 - IAI46_02040 0.69 +0.1
437,761 - IAI46_02040 0.69 -0.2
437,763 + IAI46_02040 0.69 +0.2
437,764 - IAI46_02040 0.69 +0.4
437,764 - IAI46_02040 0.69 +0.0
437,764 - IAI46_02040 0.69 +0.8
437,779 + IAI46_02040 0.70 +0.3
437,779 + IAI46_02040 0.70 +0.2
437,795 - IAI46_02040 0.71 +0.1
437,849 + IAI46_02040 0.73 +0.5
437,850 - IAI46_02040 0.73 -0.1
437,856 + IAI46_02040 0.74 +0.4
437,920 + IAI46_02040 0.77 -0.0
437,920 + IAI46_02040 0.77 -0.1
437,921 - IAI46_02040 0.77 +0.5
437,952 + IAI46_02040 0.78 +1.6
437,953 - IAI46_02040 0.78 +0.2
437,981 - IAI46_02040 0.79 +1.3
438,074 + IAI46_02040 0.84 -0.8
438,185 - IAI46_02040 0.89 +0.4
438,206 - IAI46_02040 0.90 -0.6
438,206 - IAI46_02040 0.90 +0.5
438,483 + -1.2
438,483 + +1.0
438,492 - -0.4
438,505 - +0.4
438,550 - +0.9
438,586 + +0.7
438,606 - +0.4
438,697 + -0.9
438,722 + IAI46_02045 0.25 +0.2
438,749 + IAI46_02045 0.50 +0.7
438,749 + IAI46_02045 0.50 +0.4
438,750 - IAI46_02045 0.51 +0.9
438,750 - IAI46_02045 0.51 -0.2
438,750 - IAI46_02045 0.51 +0.4
438,770 + IAI46_02045 0.70 +0.5
438,771 - IAI46_02045 0.71 +0.6
438,805 - +0.0
438,805 - -0.6
438,869 + +0.6
438,869 + +0.3
438,880 + -0.3
438,903 - -3.0
438,921 + -1.2
438,922 - -1.0
438,922 - +0.7
438,922 - +0.3
438,935 + +0.2
438,942 - +0.6
438,952 + -2.4
438,952 + -0.3
438,953 - -0.0
438,953 - -0.0
438,953 - +0.3
438,964 + +1.0
438,980 - +0.1
439,049 + +0.4
439,050 - -0.0
439,051 + +0.1
439,052 - +0.4
439,052 - -0.1
439,088 - -0.0
439,089 + -0.2
439,096 - -0.6
439,096 - +0.4
439,239 - +0.4
439,259 + +0.9
439,260 - +1.0
439,260 - -1.6
439,288 + IAI46_02050 0.13 +0.5
439,288 + IAI46_02050 0.13 -1.0
439,288 + IAI46_02050 0.13 +0.6
439,319 + IAI46_02050 0.20 +1.0
439,319 + IAI46_02050 0.20 +0.6
439,319 + IAI46_02050 0.20 +0.5
439,320 - IAI46_02050 0.20 +1.5
439,320 - IAI46_02050 0.20 +0.3
439,320 - IAI46_02050 0.20 +1.3
439,342 - IAI46_02050 0.25 -0.4

Or see this region's nucleotide sequence