Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01805 and IAI46_01810 are separated by 124 nucleotides IAI46_01810 and IAI46_01815 are separated by 405 nucleotides IAI46_01815 and IAI46_01820 are separated by 47 nucleotides IAI46_01820 and IAI46_01825 are separated by 251 nucleotides
IAI46_01805: IAI46_01805 - peroxide/acid stress response protein YhcN, at 393,395 to 393,658
_01805
IAI46_01810: IAI46_01810 - peroxide/acid stress response protein YhcN, at 393,783 to 394,046
_01810
IAI46_01815: IAI46_01815 - transcriptional regulator ArgR, at 394,452 to 394,922
_01815
IAI46_01820: IAI46_01820 - hypothetical protein, at 394,970 to 395,137
_01820
IAI46_01825: IAI46_01825 - malate dehydrogenase, at 395,389 to 396,327
_01825
Position (kb) 394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 393.457 kb on - strand, within IAI46_01805 at 393.464 kb on - strand, within IAI46_01805 at 393.628 kb on + strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.629 kb on - strand, within IAI46_01805 at 393.661 kb on + strand at 393.661 kb on + strand at 393.662 kb on - strand at 393.751 kb on + strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.752 kb on - strand at 393.753 kb on + strand at 393.753 kb on + strand at 393.815 kb on + strand, within IAI46_01810 at 393.816 kb on - strand, within IAI46_01810 at 393.837 kb on + strand, within IAI46_01810 at 393.844 kb on + strand, within IAI46_01810 at 393.894 kb on - strand, within IAI46_01810 at 394.031 kb on + strand at 394.032 kb on - strand at 394.032 kb on - strand at 394.037 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.113 kb on + strand at 394.114 kb on - strand at 394.114 kb on - strand at 394.114 kb on - strand at 394.183 kb on - strand at 394.183 kb on - strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.295 kb on + strand at 394.299 kb on + strand at 394.300 kb on - strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.305 kb on + strand at 394.306 kb on - strand at 394.386 kb on + strand at 394.386 kb on + strand at 394.387 kb on - strand at 394.399 kb on - strand at 394.441 kb on - strand at 394.446 kb on + strand at 394.446 kb on + strand at 394.506 kb on - strand, within IAI46_01815 at 394.562 kb on + strand, within IAI46_01815 at 394.649 kb on + strand, within IAI46_01815 at 394.650 kb on - strand, within IAI46_01815 at 394.688 kb on + strand, within IAI46_01815 at 394.723 kb on + strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.724 kb on - strand, within IAI46_01815 at 394.946 kb on + strand at 394.946 kb on + strand at 394.946 kb on + strand at 394.947 kb on - strand at 394.947 kb on - strand at 394.960 kb on - strand at 394.965 kb on + strand at 395.008 kb on - strand, within IAI46_01820 at 395.066 kb on + strand, within IAI46_01820 at 395.067 kb on - strand, within IAI46_01820 at 395.067 kb on - strand, within IAI46_01820 at 395.119 kb on + strand, within IAI46_01820 at 395.145 kb on + strand at 395.145 kb on + strand at 395.153 kb on + strand at 395.153 kb on + strand at 395.154 kb on - strand at 395.154 kb on - strand at 395.159 kb on - strand at 395.235 kb on + strand at 395.236 kb on - strand at 395.236 kb on - strand at 395.345 kb on + strand at 395.346 kb on - strand at 395.360 kb on - strand at 395.360 kb on - strand at 395.361 kb on + strand at 395.363 kb on + strand at 395.363 kb on + strand at 395.363 kb on + strand at 395.363 kb on + strand at 395.364 kb on - strand at 395.372 kb on + strand at 395.372 kb on + strand at 395.383 kb on + strand at 395.383 kb on + strand at 395.383 kb on + strand at 395.384 kb on - strand at 395.385 kb on + strand at 395.385 kb on + strand at 395.385 kb on + strand at 395.386 kb on - strand at 395.386 kb on - strand at 395.444 kb on + strand at 395.444 kb on + strand at 395.445 kb on - strand at 395.485 kb on + strand, within IAI46_01825 at 395.525 kb on + strand, within IAI46_01825 at 395.577 kb on + strand, within IAI46_01825 at 395.632 kb on - strand, within IAI46_01825 at 395.632 kb on - strand, within IAI46_01825 at 395.640 kb on + strand, within IAI46_01825 at 395.641 kb on - strand, within IAI46_01825 at 395.685 kb on + strand, within IAI46_01825 at 395.685 kb on + strand, within IAI46_01825 at 395.800 kb on + strand, within IAI46_01825 at 395.801 kb on - strand, within IAI46_01825
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 393,457 - IAI46_01805 0.23 +0.9 393,464 - IAI46_01805 0.26 +0.2 393,628 + IAI46_01805 0.88 +0.1 393,629 - IAI46_01805 0.89 +0.2 393,629 - IAI46_01805 0.89 +1.3 393,629 - IAI46_01805 0.89 -0.4 393,629 - IAI46_01805 0.89 -0.0 393,629 - IAI46_01805 0.89 +0.1 393,661 + -0.2 393,661 + -0.6 393,662 - +0.1 393,751 + +0.8 393,752 - -0.9 393,752 - -0.2 393,752 - -0.1 393,752 - +0.5 393,753 + +0.2 393,753 + +0.6 393,815 + IAI46_01810 0.12 -0.2 393,816 - IAI46_01810 0.12 +0.5 393,837 + IAI46_01810 0.20 +0.2 393,844 + IAI46_01810 0.23 -0.9 393,894 - IAI46_01810 0.42 +0.2 394,031 + -0.3 394,032 - +1.1 394,032 - +0.5 394,037 + +0.8 394,113 + +0.3 394,113 + +1.0 394,113 + -0.0 394,113 + +0.2 394,114 - +0.6 394,114 - +1.0 394,114 - -0.4 394,183 - -0.6 394,183 - +0.3 394,260 + -0.8 394,260 + -0.8 394,260 + -0.5 394,261 - +0.3 394,261 - -0.4 394,261 - -0.2 394,295 + +0.2 394,295 + +0.2 394,295 + -0.2 394,295 + +0.2 394,295 + +0.8 394,295 + -2.0 394,299 + +0.1 394,300 - -0.4 394,305 + -0.5 394,305 + +0.7 394,305 + +0.8 394,305 + -0.4 394,305 + -0.3 394,306 - -0.2 394,386 + +0.8 394,386 + -0.3 394,387 - +1.1 394,399 - +0.7 394,441 - +0.5 394,446 + +1.2 394,446 + +0.2 394,506 - IAI46_01815 0.11 -1.1 394,562 + IAI46_01815 0.23 -1.7 394,649 + IAI46_01815 0.42 -0.2 394,650 - IAI46_01815 0.42 -0.3 394,688 + IAI46_01815 0.50 -0.2 394,723 + IAI46_01815 0.58 -0.9 394,724 - IAI46_01815 0.58 -0.4 394,724 - IAI46_01815 0.58 +1.2 394,724 - IAI46_01815 0.58 -1.7 394,724 - IAI46_01815 0.58 -0.0 394,724 - IAI46_01815 0.58 -1.2 394,946 + -1.2 394,946 + -1.0 394,946 + -1.4 394,947 - +0.3 394,947 - -0.1 394,960 - +0.4 394,965 + -2.9 395,008 - IAI46_01820 0.23 +0.5 395,066 + IAI46_01820 0.57 -0.7 395,067 - IAI46_01820 0.58 +0.5 395,067 - IAI46_01820 0.58 +0.5 395,119 + IAI46_01820 0.89 +0.6 395,145 + +0.2 395,145 + +1.3 395,153 + -0.1 395,153 + +0.1 395,154 - -0.1 395,154 - -0.4 395,159 - +0.5 395,235 + +0.7 395,236 - +0.5 395,236 - -0.8 395,345 + +0.1 395,346 - +2.1 395,360 - +0.4 395,360 - +1.8 395,361 + +0.1 395,363 + +0.3 395,363 + +1.0 395,363 + +1.2 395,363 + -0.0 395,364 - +0.5 395,372 + +0.1 395,372 + +0.5 395,383 + +0.8 395,383 + -0.1 395,383 + +0.4 395,384 - -0.9 395,385 + +0.2 395,385 + -1.0 395,385 + +0.0 395,386 - +0.3 395,386 - +0.7 395,444 + +0.2 395,444 + -1.1 395,445 - +1.6 395,485 + IAI46_01825 0.10 +0.6 395,525 + IAI46_01825 0.14 +0.6 395,577 + IAI46_01825 0.20 -0.8 395,632 - IAI46_01825 0.26 -0.6 395,632 - IAI46_01825 0.26 +0.8 395,640 + IAI46_01825 0.27 -0.9 395,641 - IAI46_01825 0.27 +0.7 395,685 + IAI46_01825 0.32 +0.1 395,685 + IAI46_01825 0.32 +0.2 395,800 + IAI46_01825 0.44 +0.1 395,801 - IAI46_01825 0.44 +0.6
Or see this region's nucleotide sequence