Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01740 and IAI46_01745 are separated by 256 nucleotides IAI46_01745 and IAI46_01750 are separated by 1 nucleotides IAI46_01750 and IAI46_01755 are separated by 326 nucleotides IAI46_01755 and IAI46_01760 are separated by 197 nucleotides
IAI46_01740: IAI46_01740 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 375,631 to 377,583
_01740
IAI46_01745: IAI46_01745 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 377,840 to 378,580
_01745
IAI46_01750: IAI46_01750 - YtfJ family protein, at 378,582 to 379,139
_01750
IAI46_01755: IAI46_01755 - DUF1107 domain-containing protein, at 379,466 to 379,672
_01755
IAI46_01760: IAI46_01760 - HlyC/CorC family transporter, at 379,870 to 381,201
_01760
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 377.616 kb on + strand at 377.633 kb on + strand at 377.634 kb on - strand at 377.638 kb on - strand at 377.638 kb on - strand at 377.744 kb on + strand at 377.745 kb on - strand at 377.752 kb on + strand at 377.753 kb on - strand at 377.761 kb on + strand at 377.761 kb on + strand at 377.780 kb on + strand at 377.781 kb on - strand at 377.788 kb on + strand at 377.788 kb on + strand at 377.788 kb on + strand at 377.789 kb on - strand at 377.789 kb on - strand at 378.210 kb on - strand, within IAI46_01745 at 378.410 kb on - strand, within IAI46_01745 at 378.528 kb on - strand at 378.528 kb on - strand at 378.529 kb on + strand at 378.530 kb on - strand at 378.549 kb on + strand at 378.579 kb on - strand at 378.843 kb on + strand, within IAI46_01750 at 378.843 kb on + strand, within IAI46_01750 at 378.878 kb on + strand, within IAI46_01750 at 378.878 kb on + strand, within IAI46_01750 at 378.879 kb on - strand, within IAI46_01750 at 378.879 kb on - strand, within IAI46_01750 at 378.887 kb on + strand, within IAI46_01750 at 378.888 kb on - strand, within IAI46_01750 at 378.888 kb on - strand, within IAI46_01750 at 378.930 kb on - strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.941 kb on + strand, within IAI46_01750 at 378.942 kb on - strand, within IAI46_01750 at 378.942 kb on - strand, within IAI46_01750 at 378.948 kb on + strand, within IAI46_01750 at 378.948 kb on + strand, within IAI46_01750 at 378.948 kb on + strand, within IAI46_01750 at 378.949 kb on - strand, within IAI46_01750 at 378.949 kb on - strand, within IAI46_01750 at 378.981 kb on - strand, within IAI46_01750 at 378.994 kb on + strand, within IAI46_01750 at 378.998 kb on + strand, within IAI46_01750 at 378.998 kb on + strand, within IAI46_01750 at 378.999 kb on - strand, within IAI46_01750 at 378.999 kb on - strand, within IAI46_01750 at 378.999 kb on - strand, within IAI46_01750 at 378.999 kb on - strand, within IAI46_01750 at 379.005 kb on - strand, within IAI46_01750 at 379.005 kb on - strand, within IAI46_01750 at 379.005 kb on - strand, within IAI46_01750 at 379.005 kb on - strand, within IAI46_01750 at 379.015 kb on + strand, within IAI46_01750 at 379.032 kb on - strand, within IAI46_01750 at 379.090 kb on - strand at 379.090 kb on - strand at 379.118 kb on + strand at 379.119 kb on - strand at 379.119 kb on - strand at 379.185 kb on + strand at 379.192 kb on + strand at 379.192 kb on + strand at 379.193 kb on - strand at 379.193 kb on - strand at 379.193 kb on - strand at 379.193 kb on - strand at 379.193 kb on - strand at 379.219 kb on + strand at 379.250 kb on + strand at 379.272 kb on + strand at 379.275 kb on - strand at 379.291 kb on - strand at 379.291 kb on - strand at 379.291 kb on - strand at 379.294 kb on - strand at 379.294 kb on - strand at 379.301 kb on - strand at 379.301 kb on - strand at 379.365 kb on + strand at 379.366 kb on - strand at 379.366 kb on - strand at 379.366 kb on - strand at 379.369 kb on - strand at 379.369 kb on - strand at 379.369 kb on - strand at 379.369 kb on - strand at 379.374 kb on + strand at 379.374 kb on + strand at 379.375 kb on - strand at 379.377 kb on + strand at 379.377 kb on + strand at 379.377 kb on + strand at 379.377 kb on + strand at 379.378 kb on - strand at 379.378 kb on - strand at 379.378 kb on - strand at 379.378 kb on - strand at 379.378 kb on - strand at 379.402 kb on - strand at 379.406 kb on + strand at 379.459 kb on + strand at 379.459 kb on + strand at 379.459 kb on + strand at 379.459 kb on + strand at 379.460 kb on - strand at 379.462 kb on + strand at 379.462 kb on + strand at 379.463 kb on - strand at 379.463 kb on - strand at 379.463 kb on - strand at 379.484 kb on + strand at 379.485 kb on - strand at 379.485 kb on - strand at 379.485 kb on - strand at 379.485 kb on - strand at 379.486 kb on + strand at 379.486 kb on + strand at 379.512 kb on + strand, within IAI46_01755 at 379.512 kb on + strand, within IAI46_01755 at 379.513 kb on - strand, within IAI46_01755 at 379.513 kb on - strand, within IAI46_01755 at 379.537 kb on + strand, within IAI46_01755 at 379.538 kb on + strand, within IAI46_01755 at 379.539 kb on - strand, within IAI46_01755 at 379.539 kb on - strand, within IAI46_01755 at 379.540 kb on + strand, within IAI46_01755 at 379.551 kb on + strand, within IAI46_01755 at 379.551 kb on + strand, within IAI46_01755 at 379.551 kb on + strand, within IAI46_01755 at 379.552 kb on - strand, within IAI46_01755 at 379.632 kb on + strand, within IAI46_01755 at 379.632 kb on + strand, within IAI46_01755 at 379.679 kb on - strand at 379.708 kb on + strand at 379.708 kb on + strand at 379.709 kb on - strand at 379.709 kb on - strand at 379.735 kb on + strand at 379.736 kb on - strand at 379.736 kb on - strand at 379.736 kb on - strand at 379.739 kb on + strand at 379.739 kb on + strand at 379.740 kb on - strand at 379.740 kb on - strand at 379.740 kb on - strand at 379.740 kb on - strand at 379.743 kb on + strand at 379.775 kb on - strand at 379.775 kb on - strand at 379.799 kb on + strand at 379.800 kb on - strand at 379.803 kb on + strand at 379.803 kb on + strand at 379.803 kb on + strand at 379.804 kb on - strand at 379.859 kb on + strand at 379.859 kb on + strand at 379.958 kb on + strand at 379.959 kb on - strand at 379.988 kb on + strand at 379.989 kb on - strand at 379.997 kb on + strand at 380.039 kb on + strand, within IAI46_01760 at 380.039 kb on + strand, within IAI46_01760 at 380.039 kb on + strand, within IAI46_01760 at 380.039 kb on + strand, within IAI46_01760 at 380.040 kb on - strand, within IAI46_01760 at 380.040 kb on - strand, within IAI46_01760 at 380.040 kb on - strand, within IAI46_01760 at 380.040 kb on - strand, within IAI46_01760 at 380.046 kb on + strand, within IAI46_01760 at 380.047 kb on - strand, within IAI46_01760 at 380.047 kb on - strand, within IAI46_01760 at 380.066 kb on + strand, within IAI46_01760 at 380.067 kb on - strand, within IAI46_01760
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 377,616 + +0.5 377,633 + -0.2 377,634 - +0.6 377,638 - -0.1 377,638 - +0.3 377,744 + +0.2 377,745 - +1.5 377,752 + +0.6 377,753 - -1.1 377,761 + -0.4 377,761 + -0.6 377,780 + -0.1 377,781 - +1.3 377,788 + -0.3 377,788 + +0.0 377,788 + -0.6 377,789 - -0.9 377,789 - +0.4 378,210 - IAI46_01745 0.50 +0.1 378,410 - IAI46_01745 0.77 -0.3 378,528 - -0.5 378,528 - -0.2 378,529 + -1.2 378,530 - -0.2 378,549 + +0.2 378,579 - +0.7 378,843 + IAI46_01750 0.47 +0.6 378,843 + IAI46_01750 0.47 +0.5 378,878 + IAI46_01750 0.53 -0.1 378,878 + IAI46_01750 0.53 +0.5 378,879 - IAI46_01750 0.53 -0.3 378,879 - IAI46_01750 0.53 -1.2 378,887 + IAI46_01750 0.55 +0.4 378,888 - IAI46_01750 0.55 +0.0 378,888 - IAI46_01750 0.55 -0.3 378,930 - IAI46_01750 0.62 -0.0 378,941 + IAI46_01750 0.64 +1.2 378,941 + IAI46_01750 0.64 +1.0 378,941 + IAI46_01750 0.64 -0.0 378,941 + IAI46_01750 0.64 +0.7 378,941 + IAI46_01750 0.64 -0.4 378,941 + IAI46_01750 0.64 +0.4 378,942 - IAI46_01750 0.65 +0.1 378,942 - IAI46_01750 0.65 +0.7 378,948 + IAI46_01750 0.66 -0.0 378,948 + IAI46_01750 0.66 +0.4 378,948 + IAI46_01750 0.66 +0.2 378,949 - IAI46_01750 0.66 +0.5 378,949 - IAI46_01750 0.66 -0.1 378,981 - IAI46_01750 0.72 +0.1 378,994 + IAI46_01750 0.74 -0.3 378,998 + IAI46_01750 0.75 -0.4 378,998 + IAI46_01750 0.75 -0.3 378,999 - IAI46_01750 0.75 -0.3 378,999 - IAI46_01750 0.75 -0.7 378,999 - IAI46_01750 0.75 -0.6 378,999 - IAI46_01750 0.75 -0.2 379,005 - IAI46_01750 0.76 -0.1 379,005 - IAI46_01750 0.76 -0.0 379,005 - IAI46_01750 0.76 +0.3 379,005 - IAI46_01750 0.76 +0.3 379,015 + IAI46_01750 0.78 +0.8 379,032 - IAI46_01750 0.81 +0.3 379,090 - -0.9 379,090 - +0.1 379,118 + +1.0 379,119 - -0.1 379,119 - -0.1 379,185 + +0.5 379,192 + +0.2 379,192 + +0.3 379,193 - -0.1 379,193 - +0.6 379,193 - +0.5 379,193 - +1.0 379,193 - +0.1 379,219 + -1.7 379,250 + -1.1 379,272 + +1.5 379,275 - -0.8 379,291 - -0.2 379,291 - +1.0 379,291 - -0.7 379,294 - +0.2 379,294 - -0.2 379,301 - +0.8 379,301 - +0.8 379,365 + -0.0 379,366 - -0.0 379,366 - +0.4 379,366 - -0.1 379,369 - +0.1 379,369 - -0.5 379,369 - -0.2 379,369 - +0.1 379,374 + -0.0 379,374 + -0.1 379,375 - -0.7 379,377 + +0.2 379,377 + -1.6 379,377 + +0.2 379,377 + +0.1 379,378 - +0.2 379,378 - +0.3 379,378 - +0.6 379,378 - +0.3 379,378 - +0.4 379,402 - +0.6 379,406 + +0.3 379,459 + +0.5 379,459 + -0.6 379,459 + +0.6 379,459 + +0.8 379,460 - +0.2 379,462 + +0.0 379,462 + +0.2 379,463 - +0.1 379,463 - +0.2 379,463 - -0.5 379,484 + +0.4 379,485 - -0.4 379,485 - -0.4 379,485 - -0.3 379,485 - +0.8 379,486 + -0.9 379,486 + +0.2 379,512 + IAI46_01755 0.22 -0.0 379,512 + IAI46_01755 0.22 -0.2 379,513 - IAI46_01755 0.23 -0.3 379,513 - IAI46_01755 0.23 +0.4 379,537 + IAI46_01755 0.34 +0.2 379,538 + IAI46_01755 0.35 +0.0 379,539 - IAI46_01755 0.35 -1.0 379,539 - IAI46_01755 0.35 +0.3 379,540 + IAI46_01755 0.36 +0.3 379,551 + IAI46_01755 0.41 +0.4 379,551 + IAI46_01755 0.41 +0.6 379,551 + IAI46_01755 0.41 +0.4 379,552 - IAI46_01755 0.42 -2.7 379,632 + IAI46_01755 0.80 +0.9 379,632 + IAI46_01755 0.80 +2.6 379,679 - +0.6 379,708 + -0.0 379,708 + +1.0 379,709 - +0.4 379,709 - -0.4 379,735 + -0.8 379,736 - +0.1 379,736 - -0.4 379,736 - +1.5 379,739 + +0.4 379,739 + -0.3 379,740 - +0.4 379,740 - -1.2 379,740 - +0.6 379,740 - -1.2 379,743 + -0.2 379,775 - -0.2 379,775 - -0.2 379,799 + -0.0 379,800 - -0.0 379,803 + +0.1 379,803 + -0.5 379,803 + +0.2 379,804 - -0.4 379,859 + +0.0 379,859 + +0.1 379,958 + +0.2 379,959 - +0.5 379,988 + +0.3 379,989 - +0.2 379,997 + +0.8 380,039 + IAI46_01760 0.13 -0.3 380,039 + IAI46_01760 0.13 +0.9 380,039 + IAI46_01760 0.13 +0.1 380,039 + IAI46_01760 0.13 +1.0 380,040 - IAI46_01760 0.13 +0.1 380,040 - IAI46_01760 0.13 +1.1 380,040 - IAI46_01760 0.13 -0.2 380,040 - IAI46_01760 0.13 +0.3 380,046 + IAI46_01760 0.13 +0.3 380,047 - IAI46_01760 0.13 -0.7 380,047 - IAI46_01760 0.13 +0.0 380,066 + IAI46_01760 0.15 +1.1 380,067 - IAI46_01760 0.15 +0.6
Or see this region's nucleotide sequence