Strain Fitness in Serratia liquefaciens MT49 around IAI46_01645

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01640 and IAI46_01645 are separated by 63 nucleotidesIAI46_01645 and IAI46_01650 are separated by 97 nucleotides IAI46_01640: IAI46_01640 - protease modulator HflC, at 359,731 to 360,738 _01640 IAI46_01645: IAI46_01645 - DUF2065 domain-containing protein, at 360,802 to 361,002 _01645 IAI46_01650: IAI46_01650 - adenylosuccinate synthase, at 361,100 to 362,398 _01650 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1at 359.872 kb on + strand, within IAI46_01640at 359.872 kb on + strand, within IAI46_01640at 360.004 kb on + strand, within IAI46_01640at 360.004 kb on + strand, within IAI46_01640at 360.018 kb on + strand, within IAI46_01640at 360.019 kb on - strand, within IAI46_01640at 360.093 kb on + strand, within IAI46_01640at 360.094 kb on - strand, within IAI46_01640at 360.094 kb on - strand, within IAI46_01640at 360.165 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.408 kb on + strand, within IAI46_01640at 360.409 kb on - strand, within IAI46_01640at 360.493 kb on + strand, within IAI46_01640at 360.494 kb on - strand, within IAI46_01640at 360.494 kb on - strand, within IAI46_01640at 360.528 kb on + strand, within IAI46_01640at 360.529 kb on - strand, within IAI46_01640at 360.538 kb on - strand, within IAI46_01640at 360.538 kb on - strand, within IAI46_01640at 360.610 kb on + strand, within IAI46_01640at 360.611 kb on - strand, within IAI46_01640at 360.638 kb on - strandat 360.749 kb on + strandat 360.749 kb on + strandat 360.749 kb on + strandat 360.750 kb on - strandat 360.894 kb on - strand, within IAI46_01645at 360.894 kb on - strand, within IAI46_01645at 360.921 kb on + strand, within IAI46_01645at 360.921 kb on + strand, within IAI46_01645at 360.922 kb on - strand, within IAI46_01645at 360.922 kb on - strand, within IAI46_01645at 360.948 kb on - strand, within IAI46_01645at 360.971 kb on - strand, within IAI46_01645at 360.971 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.974 kb on - strand, within IAI46_01645at 360.985 kb on - strandat 361.020 kb on - strandat 361.147 kb on + strandat 361.524 kb on + strand, within IAI46_01650at 361.667 kb on + strand, within IAI46_01650

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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359,872 + IAI46_01640 0.14 +0.2
359,872 + IAI46_01640 0.14 -0.3
360,004 + IAI46_01640 0.27 +0.4
360,004 + IAI46_01640 0.27 +0.4
360,018 + IAI46_01640 0.28 -0.5
360,019 - IAI46_01640 0.29 +0.6
360,093 + IAI46_01640 0.36 -1.5
360,094 - IAI46_01640 0.36 +0.6
360,094 - IAI46_01640 0.36 -0.2
360,165 + IAI46_01640 0.43 -0.8
360,408 + IAI46_01640 0.67 -0.4
360,408 + IAI46_01640 0.67 -0.7
360,408 + IAI46_01640 0.67 -0.3
360,409 - IAI46_01640 0.67 +1.0
360,493 + IAI46_01640 0.76 +1.6
360,494 - IAI46_01640 0.76 +1.3
360,494 - IAI46_01640 0.76 +1.3
360,528 + IAI46_01640 0.79 +0.8
360,529 - IAI46_01640 0.79 -0.3
360,538 - IAI46_01640 0.80 +1.0
360,538 - IAI46_01640 0.80 +0.5
360,610 + IAI46_01640 0.87 +0.5
360,611 - IAI46_01640 0.87 -1.1
360,638 - +1.1
360,749 + -0.2
360,749 + -1.8
360,749 + +0.5
360,750 - -0.3
360,894 - IAI46_01645 0.46 -2.0
360,894 - IAI46_01645 0.46 +0.0
360,921 + IAI46_01645 0.59 +0.4
360,921 + IAI46_01645 0.59 -0.6
360,922 - IAI46_01645 0.60 -0.7
360,922 - IAI46_01645 0.60 +0.7
360,948 - IAI46_01645 0.73 +0.4
360,971 - IAI46_01645 0.84 +0.5
360,971 - IAI46_01645 0.84 -0.5
360,974 - IAI46_01645 0.86 +0.6
360,974 - IAI46_01645 0.86 +0.3
360,974 - IAI46_01645 0.86 +1.0
360,985 - -1.1
361,020 - +0.7
361,147 + +0.4
361,524 + IAI46_01650 0.33 +1.1
361,667 + IAI46_01650 0.44 -0.3

Or see this region's nucleotide sequence