Strain Fitness in Serratia liquefaciens MT49 around IAI46_00820

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00815 and IAI46_00820 are separated by 46 nucleotidesIAI46_00820 and IAI46_00825 are separated by 80 nucleotidesIAI46_00825 and IAI46_00830 are separated by 40 nucleotides IAI46_00815: IAI46_00815 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 186,087 to 187,286 _00815 IAI46_00820: IAI46_00820 - DcrB family lipoprotein, at 187,333 to 187,896 _00820 IAI46_00825: IAI46_00825 - GNAT family N-acetyltransferase, at 187,977 to 188,411 _00825 IAI46_00830: IAI46_00830 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 188,452 to 189,117 _00830 Position (kb) 187 188Strain fitness (log2 ratio) -2 -1 0 1at 186.387 kb on - strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.513 kb on + strand, within IAI46_00815at 186.514 kb on - strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.612 kb on + strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.613 kb on - strand, within IAI46_00815at 186.683 kb on + strand, within IAI46_00815at 186.827 kb on + strand, within IAI46_00815at 186.833 kb on + strand, within IAI46_00815at 186.834 kb on - strand, within IAI46_00815at 186.872 kb on + strand, within IAI46_00815at 186.872 kb on + strand, within IAI46_00815at 186.873 kb on - strand, within IAI46_00815at 186.978 kb on + strand, within IAI46_00815at 186.978 kb on + strand, within IAI46_00815at 186.979 kb on - strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.983 kb on + strand, within IAI46_00815at 186.984 kb on - strand, within IAI46_00815at 187.020 kb on + strand, within IAI46_00815at 187.021 kb on - strand, within IAI46_00815at 187.021 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.023 kb on - strand, within IAI46_00815at 187.033 kb on + strand, within IAI46_00815at 187.034 kb on - strand, within IAI46_00815at 187.034 kb on - strand, within IAI46_00815at 187.066 kb on + strand, within IAI46_00815at 187.066 kb on + strand, within IAI46_00815at 187.067 kb on - strand, within IAI46_00815at 187.067 kb on - strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815at 187.069 kb on + strand, within IAI46_00815at 187.101 kb on + strand, within IAI46_00815at 187.101 kb on + strand, within IAI46_00815at 187.122 kb on + strand, within IAI46_00815at 187.122 kb on + strand, within IAI46_00815at 187.123 kb on - strand, within IAI46_00815at 187.123 kb on - strand, within IAI46_00815at 187.123 kb on - strand, within IAI46_00815at 187.211 kb on + strandat 187.259 kb on + strandat 187.285 kb on - strandat 187.313 kb on + strandat 187.313 kb on + strandat 187.313 kb on + strandat 187.313 kb on + strandat 187.314 kb on - strandat 187.314 kb on - strandat 187.326 kb on + strandat 187.334 kb on + strandat 187.335 kb on - strandat 187.463 kb on + strand, within IAI46_00820at 187.463 kb on + strand, within IAI46_00820at 187.463 kb on + strand, within IAI46_00820at 187.486 kb on - strand, within IAI46_00820at 187.486 kb on - strand, within IAI46_00820at 187.578 kb on + strand, within IAI46_00820at 187.722 kb on + strand, within IAI46_00820at 187.749 kb on + strand, within IAI46_00820at 187.750 kb on - strand, within IAI46_00820at 187.750 kb on - strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.766 kb on - strand, within IAI46_00820at 187.766 kb on - strand, within IAI46_00820at 187.859 kb on - strandat 187.936 kb on + strandat 187.946 kb on + strandat 187.946 kb on + strandat 187.947 kb on - strandat 187.995 kb on + strandat 187.995 kb on + strandat 187.995 kb on + strandat 187.996 kb on - strandat 187.999 kb on - strandat 188.048 kb on - strand, within IAI46_00825at 188.061 kb on - strand, within IAI46_00825at 188.061 kb on - strand, within IAI46_00825at 188.091 kb on - strand, within IAI46_00825at 188.117 kb on - strand, within IAI46_00825at 188.182 kb on + strand, within IAI46_00825at 188.193 kb on + strand, within IAI46_00825at 188.193 kb on + strand, within IAI46_00825at 188.194 kb on - strand, within IAI46_00825at 188.212 kb on + strand, within IAI46_00825at 188.212 kb on + strand, within IAI46_00825at 188.362 kb on + strand, within IAI46_00825at 188.363 kb on - strand, within IAI46_00825at 188.430 kb on - strandat 188.443 kb on + strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.508 kb on + strandat 188.509 kb on - strandat 188.525 kb on + strand, within IAI46_00830at 188.525 kb on + strand, within IAI46_00830at 188.570 kb on + strand, within IAI46_00830at 188.627 kb on + strand, within IAI46_00830at 188.627 kb on + strand, within IAI46_00830at 188.628 kb on - strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.665 kb on - strand, within IAI46_00830at 188.720 kb on - strand, within IAI46_00830at 188.737 kb on + strand, within IAI46_00830at 188.738 kb on - strand, within IAI46_00830at 188.738 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.788 kb on - strand, within IAI46_00830at 188.811 kb on + strand, within IAI46_00830at 188.846 kb on + strand, within IAI46_00830at 188.846 kb on + strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.868 kb on - strand, within IAI46_00830at 188.868 kb on - strand, within IAI46_00830at 188.874 kb on + strand, within IAI46_00830at 188.875 kb on - strand, within IAI46_00830at 188.875 kb on - strand, within IAI46_00830

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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186,387 - IAI46_00815 0.25 -0.2
186,513 + IAI46_00815 0.35 -0.2
186,513 + IAI46_00815 0.35 -1.0
186,513 + IAI46_00815 0.35 +0.7
186,514 - IAI46_00815 0.36 +0.5
186,612 + IAI46_00815 0.44 -0.1
186,612 + IAI46_00815 0.44 -0.0
186,612 + IAI46_00815 0.44 +0.8
186,613 - IAI46_00815 0.44 -0.4
186,613 - IAI46_00815 0.44 -0.8
186,613 - IAI46_00815 0.44 -1.0
186,683 + IAI46_00815 0.50 +0.1
186,827 + IAI46_00815 0.62 -0.6
186,833 + IAI46_00815 0.62 -1.3
186,834 - IAI46_00815 0.62 -0.9
186,872 + IAI46_00815 0.65 +0.1
186,872 + IAI46_00815 0.65 -1.5
186,873 - IAI46_00815 0.66 +1.2
186,978 + IAI46_00815 0.74 +0.7
186,978 + IAI46_00815 0.74 +0.2
186,979 - IAI46_00815 0.74 +0.3
186,983 + IAI46_00815 0.75 -0.8
186,983 + IAI46_00815 0.75 -0.4
186,983 + IAI46_00815 0.75 +0.1
186,983 + IAI46_00815 0.75 +0.6
186,984 - IAI46_00815 0.75 +0.1
187,020 + IAI46_00815 0.78 -0.3
187,021 - IAI46_00815 0.78 -0.5
187,021 - IAI46_00815 0.78 +1.5
187,023 - IAI46_00815 0.78 +0.2
187,023 - IAI46_00815 0.78 +1.4
187,023 - IAI46_00815 0.78 -1.6
187,023 - IAI46_00815 0.78 -0.0
187,023 - IAI46_00815 0.78 -0.0
187,033 + IAI46_00815 0.79 -0.1
187,034 - IAI46_00815 0.79 +0.5
187,034 - IAI46_00815 0.79 +0.0
187,066 + IAI46_00815 0.82 +0.7
187,066 + IAI46_00815 0.82 -0.7
187,067 - IAI46_00815 0.82 +0.6
187,067 - IAI46_00815 0.82 -0.2
187,069 + IAI46_00815 0.82 -0.1
187,069 + IAI46_00815 0.82 +1.2
187,069 + IAI46_00815 0.82 -1.8
187,101 + IAI46_00815 0.84 +1.0
187,101 + IAI46_00815 0.84 +0.1
187,122 + IAI46_00815 0.86 -0.1
187,122 + IAI46_00815 0.86 +0.1
187,123 - IAI46_00815 0.86 +0.2
187,123 - IAI46_00815 0.86 -1.5
187,123 - IAI46_00815 0.86 -0.0
187,211 + +0.6
187,259 + +0.2
187,285 - +1.4
187,313 + -1.2
187,313 + -0.2
187,313 + +0.2
187,313 + +1.5
187,314 - +0.8
187,314 - +0.7
187,326 + -0.0
187,334 + +0.0
187,335 - +0.6
187,463 + IAI46_00820 0.23 -0.1
187,463 + IAI46_00820 0.23 +0.9
187,463 + IAI46_00820 0.23 +0.1
187,486 - IAI46_00820 0.27 -2.4
187,486 - IAI46_00820 0.27 -0.4
187,578 + IAI46_00820 0.43 +0.3
187,722 + IAI46_00820 0.69 +0.6
187,749 + IAI46_00820 0.74 -0.7
187,750 - IAI46_00820 0.74 -0.5
187,750 - IAI46_00820 0.74 +0.0
187,765 + IAI46_00820 0.77 -0.2
187,765 + IAI46_00820 0.77 +0.0
187,765 + IAI46_00820 0.77 -0.8
187,766 - IAI46_00820 0.77 +0.2
187,766 - IAI46_00820 0.77 +1.6
187,859 - -0.2
187,936 + +0.7
187,946 + +1.3
187,946 + +0.4
187,947 - -1.0
187,995 + +0.8
187,995 + +0.0
187,995 + +0.3
187,996 - -0.0
187,999 - -0.5
188,048 - IAI46_00825 0.16 +0.4
188,061 - IAI46_00825 0.19 +0.4
188,061 - IAI46_00825 0.19 +0.7
188,091 - IAI46_00825 0.26 -0.2
188,117 - IAI46_00825 0.32 +0.4
188,182 + IAI46_00825 0.47 +0.1
188,193 + IAI46_00825 0.50 +0.8
188,193 + IAI46_00825 0.50 +0.2
188,194 - IAI46_00825 0.50 +0.2
188,212 + IAI46_00825 0.54 +0.2
188,212 + IAI46_00825 0.54 -0.6
188,362 + IAI46_00825 0.89 +0.6
188,363 - IAI46_00825 0.89 -0.4
188,430 - +0.8
188,443 + -0.2
188,444 - -0.4
188,444 - +1.0
188,444 - -2.6
188,444 - -0.9
188,508 + -1.3
188,509 - +0.8
188,525 + IAI46_00830 0.11 +0.2
188,525 + IAI46_00830 0.11 +0.9
188,570 + IAI46_00830 0.18 +0.0
188,627 + IAI46_00830 0.26 +0.8
188,627 + IAI46_00830 0.26 +0.6
188,628 - IAI46_00830 0.26 -0.1
188,637 + IAI46_00830 0.28 +0.6
188,637 + IAI46_00830 0.28 -0.2
188,637 + IAI46_00830 0.28 +0.5
188,665 - IAI46_00830 0.32 +0.1
188,720 - IAI46_00830 0.40 +0.5
188,737 + IAI46_00830 0.43 -2.1
188,738 - IAI46_00830 0.43 +0.8
188,738 - IAI46_00830 0.43 +0.2
188,763 - IAI46_00830 0.47 -0.0
188,763 - IAI46_00830 0.47 +0.4
188,763 - IAI46_00830 0.47 -0.5
188,788 - IAI46_00830 0.50 -0.0
188,811 + IAI46_00830 0.54 +0.1
188,846 + IAI46_00830 0.59 -0.0
188,846 + IAI46_00830 0.59 +0.9
188,847 - IAI46_00830 0.59 +0.1
188,847 - IAI46_00830 0.59 +0.3
188,847 - IAI46_00830 0.59 +0.2
188,867 + IAI46_00830 0.62 -1.0
188,867 + IAI46_00830 0.62 +0.8
188,867 + IAI46_00830 0.62 +0.8
188,868 - IAI46_00830 0.62 +0.0
188,868 - IAI46_00830 0.62 +0.5
188,874 + IAI46_00830 0.63 +0.4
188,875 - IAI46_00830 0.64 +0.1
188,875 - IAI46_00830 0.64 +1.2

Or see this region's nucleotide sequence