Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00755 and IAI46_00760 are separated by 64 nucleotides IAI46_00760 and IAI46_00765 are separated by 201 nucleotides IAI46_00765 and IAI46_00770 are separated by 48 nucleotides
IAI46_00755: IAI46_00755 - EamA family transporter RarD, at 172,587 to 173,474
_00755
IAI46_00760: IAI46_00760 - thioesterase family protein, at 173,539 to 174,009
_00760
IAI46_00765: IAI46_00765 - phospholipase A, at 174,211 to 175,089
_00765
IAI46_00770: IAI46_00770 - ATP-dependent DNA helicase RecQ, at 175,138 to 176,970
_00770
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.327 kb on + strand, within IAI46_00755 at 173.328 kb on - strand, within IAI46_00755 at 173.377 kb on - strand, within IAI46_00755 at 173.399 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.410 kb on - strand at 173.534 kb on + strand at 173.534 kb on + strand at 173.534 kb on + strand at 173.535 kb on - strand at 173.535 kb on - strand at 173.535 kb on - strand at 173.552 kb on + strand at 173.553 kb on - strand at 173.553 kb on - strand at 173.592 kb on + strand, within IAI46_00760 at 173.593 kb on - strand, within IAI46_00760 at 173.638 kb on + strand, within IAI46_00760 at 173.639 kb on - strand, within IAI46_00760 at 173.639 kb on - strand, within IAI46_00760 at 173.639 kb on - strand, within IAI46_00760 at 173.684 kb on + strand, within IAI46_00760 at 173.685 kb on - strand, within IAI46_00760 at 173.701 kb on + strand, within IAI46_00760 at 173.701 kb on + strand, within IAI46_00760 at 173.701 kb on + strand, within IAI46_00760 at 173.701 kb on + strand, within IAI46_00760 at 173.702 kb on - strand, within IAI46_00760 at 173.702 kb on - strand, within IAI46_00760 at 173.702 kb on - strand, within IAI46_00760 at 173.702 kb on - strand, within IAI46_00760 at 173.891 kb on + strand, within IAI46_00760 at 173.892 kb on - strand, within IAI46_00760 at 173.892 kb on - strand, within IAI46_00760 at 173.892 kb on - strand, within IAI46_00760 at 173.948 kb on + strand, within IAI46_00760 at 173.948 kb on + strand, within IAI46_00760 at 173.949 kb on - strand, within IAI46_00760 at 173.987 kb on - strand at 173.987 kb on - strand at 174.004 kb on - strand at 174.004 kb on - strand at 174.009 kb on + strand at 174.009 kb on + strand at 174.009 kb on + strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.010 kb on - strand at 174.013 kb on + strand at 174.014 kb on - strand at 174.014 kb on - strand at 174.014 kb on - strand at 174.014 kb on - strand at 174.035 kb on + strand at 174.043 kb on + strand at 174.077 kb on - strand at 174.077 kb on - strand at 174.079 kb on + strand at 174.080 kb on - strand at 174.088 kb on - strand at 174.107 kb on + strand at 174.108 kb on - strand at 174.115 kb on + strand at 174.119 kb on + strand at 174.119 kb on + strand at 174.120 kb on - strand at 174.154 kb on + strand at 174.154 kb on + strand at 174.154 kb on + strand at 174.300 kb on + strand, within IAI46_00765 at 174.312 kb on - strand, within IAI46_00765 at 174.324 kb on + strand, within IAI46_00765 at 174.360 kb on + strand, within IAI46_00765 at 174.360 kb on + strand, within IAI46_00765 at 174.367 kb on + strand, within IAI46_00765 at 174.368 kb on - strand, within IAI46_00765 at 174.385 kb on + strand, within IAI46_00765 at 174.386 kb on - strand, within IAI46_00765 at 174.386 kb on - strand, within IAI46_00765 at 174.386 kb on - strand, within IAI46_00765 at 174.386 kb on - strand, within IAI46_00765 at 174.386 kb on - strand, within IAI46_00765 at 174.394 kb on + strand, within IAI46_00765 at 174.394 kb on + strand, within IAI46_00765 at 174.394 kb on + strand, within IAI46_00765 at 174.394 kb on + strand, within IAI46_00765 at 174.394 kb on + strand, within IAI46_00765 at 174.395 kb on - strand, within IAI46_00765 at 174.395 kb on - strand, within IAI46_00765 at 174.395 kb on - strand, within IAI46_00765 at 174.411 kb on + strand, within IAI46_00765 at 174.411 kb on + strand, within IAI46_00765 at 174.411 kb on + strand, within IAI46_00765 at 174.436 kb on + strand, within IAI46_00765 at 174.436 kb on + strand, within IAI46_00765 at 174.436 kb on + strand, within IAI46_00765 at 174.437 kb on - strand, within IAI46_00765 at 174.544 kb on + strand, within IAI46_00765 at 174.544 kb on + strand, within IAI46_00765 at 174.544 kb on + strand, within IAI46_00765 at 174.545 kb on - strand, within IAI46_00765 at 174.545 kb on - strand, within IAI46_00765 at 174.545 kb on - strand, within IAI46_00765 at 174.545 kb on - strand, within IAI46_00765 at 174.546 kb on + strand, within IAI46_00765 at 174.547 kb on - strand, within IAI46_00765 at 174.547 kb on - strand, within IAI46_00765 at 174.610 kb on + strand, within IAI46_00765 at 174.610 kb on + strand, within IAI46_00765 at 174.610 kb on + strand, within IAI46_00765 at 174.611 kb on - strand, within IAI46_00765 at 174.611 kb on - strand, within IAI46_00765 at 174.756 kb on + strand, within IAI46_00765 at 174.757 kb on - strand, within IAI46_00765 at 174.757 kb on - strand, within IAI46_00765 at 174.757 kb on - strand, within IAI46_00765 at 174.850 kb on + strand, within IAI46_00765 at 174.850 kb on + strand, within IAI46_00765 at 174.850 kb on + strand, within IAI46_00765 at 174.850 kb on + strand, within IAI46_00765 at 174.851 kb on - strand, within IAI46_00765 at 174.851 kb on - strand, within IAI46_00765 at 174.851 kb on - strand, within IAI46_00765 at 174.851 kb on - strand, within IAI46_00765 at 174.862 kb on + strand, within IAI46_00765 at 174.863 kb on - strand, within IAI46_00765 at 174.880 kb on + strand, within IAI46_00765 at 174.881 kb on - strand, within IAI46_00765 at 174.919 kb on + strand, within IAI46_00765 at 174.919 kb on + strand, within IAI46_00765 at 174.920 kb on - strand, within IAI46_00765 at 174.920 kb on - strand, within IAI46_00765 at 174.920 kb on - strand, within IAI46_00765 at 174.920 kb on - strand, within IAI46_00765 at 174.920 kb on - strand, within IAI46_00765 at 174.922 kb on - strand, within IAI46_00765 at 174.922 kb on - strand, within IAI46_00765 at 174.922 kb on - strand, within IAI46_00765 at 174.991 kb on + strand, within IAI46_00765 at 174.991 kb on + strand, within IAI46_00765 at 175.034 kb on - strand at 175.080 kb on + strand at 175.080 kb on + strand at 175.080 kb on + strand at 175.080 kb on + strand at 175.080 kb on + strand at 175.080 kb on + strand at 175.081 kb on - strand at 175.081 kb on - strand at 175.081 kb on - strand at 175.081 kb on - strand at 175.081 kb on - strand at 175.083 kb on + strand at 175.083 kb on + strand at 175.083 kb on + strand at 175.083 kb on + strand at 175.083 kb on + strand at 175.083 kb on + strand at 175.084 kb on - strand at 175.084 kb on - strand at 175.084 kb on - strand at 175.087 kb on + strand at 175.087 kb on + strand at 175.184 kb on + strand at 175.184 kb on + strand at 175.184 kb on + strand at 175.195 kb on - strand at 175.195 kb on - strand at 175.275 kb on + strand at 175.276 kb on - strand at 175.276 kb on - strand at 175.306 kb on + strand at 175.306 kb on + strand at 175.307 kb on - strand at 175.344 kb on - strand, within IAI46_00770 at 175.344 kb on - strand, within IAI46_00770 at 175.399 kb on + strand, within IAI46_00770 at 175.420 kb on + strand, within IAI46_00770 at 175.423 kb on - strand, within IAI46_00770 at 175.423 kb on - strand, within IAI46_00770 at 175.495 kb on + strand, within IAI46_00770 at 175.495 kb on + strand, within IAI46_00770 at 175.495 kb on + strand, within IAI46_00770 at 175.496 kb on - strand, within IAI46_00770 at 175.587 kb on + strand, within IAI46_00770 at 175.587 kb on + strand, within IAI46_00770 at 175.587 kb on + strand, within IAI46_00770 at 175.587 kb on + strand, within IAI46_00770 at 175.588 kb on - strand, within IAI46_00770 at 175.588 kb on - strand, within IAI46_00770 at 175.588 kb on - strand, within IAI46_00770 at 175.588 kb on - strand, within IAI46_00770 at 175.621 kb on + strand, within IAI46_00770 at 175.621 kb on + strand, within IAI46_00770 at 175.621 kb on + strand, within IAI46_00770 at 175.698 kb on + strand, within IAI46_00770 at 175.746 kb on - strand, within IAI46_00770 at 175.780 kb on + strand, within IAI46_00770 at 175.781 kb on - strand, within IAI46_00770 at 175.782 kb on + strand, within IAI46_00770 at 175.782 kb on + strand, within IAI46_00770 at 175.782 kb on + strand, within IAI46_00770 at 175.782 kb on + strand, within IAI46_00770 at 175.783 kb on - strand, within IAI46_00770 at 175.783 kb on - strand, within IAI46_00770 at 175.783 kb on - strand, within IAI46_00770 at 175.800 kb on + strand, within IAI46_00770 at 175.801 kb on - strand, within IAI46_00770 at 175.829 kb on + strand, within IAI46_00770 at 175.829 kb on + strand, within IAI46_00770 at 175.857 kb on + strand, within IAI46_00770 at 175.857 kb on + strand, within IAI46_00770 at 175.858 kb on - strand, within IAI46_00770 at 175.998 kb on - strand, within IAI46_00770 at 176.041 kb on - strand, within IAI46_00770
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 173,327 + IAI46_00755 0.83 -1.1 173,328 - IAI46_00755 0.83 +0.1 173,377 - IAI46_00755 0.89 +0.3 173,399 - -1.2 173,410 - +0.2 173,410 - -0.2 173,410 - +0.8 173,410 - -0.3 173,410 - -0.5 173,410 - +0.4 173,410 - +0.1 173,410 - +0.2 173,534 + -0.1 173,534 + +0.3 173,534 + +0.2 173,535 - +0.5 173,535 - +0.3 173,535 - +0.7 173,552 + +1.0 173,553 - -2.6 173,553 - -1.2 173,592 + IAI46_00760 0.11 +0.5 173,593 - IAI46_00760 0.11 -0.1 173,638 + IAI46_00760 0.21 +1.0 173,639 - IAI46_00760 0.21 -0.6 173,639 - IAI46_00760 0.21 +0.6 173,639 - IAI46_00760 0.21 +0.1 173,684 + IAI46_00760 0.31 -0.3 173,685 - IAI46_00760 0.31 -0.2 173,701 + IAI46_00760 0.34 -0.5 173,701 + IAI46_00760 0.34 -0.4 173,701 + IAI46_00760 0.34 -0.8 173,701 + IAI46_00760 0.34 +1.7 173,702 - IAI46_00760 0.35 -0.9 173,702 - IAI46_00760 0.35 -0.1 173,702 - IAI46_00760 0.35 +0.1 173,702 - IAI46_00760 0.35 +0.7 173,891 + IAI46_00760 0.75 -0.2 173,892 - IAI46_00760 0.75 -0.9 173,892 - IAI46_00760 0.75 -0.0 173,892 - IAI46_00760 0.75 -0.2 173,948 + IAI46_00760 0.87 +0.4 173,948 + IAI46_00760 0.87 -0.2 173,949 - IAI46_00760 0.87 +0.3 173,987 - +0.2 173,987 - +1.8 174,004 - +1.2 174,004 - +0.6 174,009 + -0.8 174,009 + +0.3 174,009 + +0.1 174,010 - -0.6 174,010 - +1.1 174,010 - +0.1 174,010 - +0.3 174,010 - -0.2 174,010 - -0.1 174,010 - -1.4 174,010 - +1.5 174,013 + +0.3 174,014 - +0.3 174,014 - -1.2 174,014 - -0.5 174,014 - +1.2 174,035 + -0.4 174,043 + -0.3 174,077 - -1.3 174,077 - +0.2 174,079 + +0.8 174,080 - +0.4 174,088 - +0.6 174,107 + +0.2 174,108 - +0.4 174,115 + +0.3 174,119 + +0.9 174,119 + +0.4 174,120 - -0.5 174,154 + +0.5 174,154 + -0.0 174,154 + -0.4 174,300 + IAI46_00765 0.10 +1.1 174,312 - IAI46_00765 0.11 +1.4 174,324 + IAI46_00765 0.13 -0.6 174,360 + IAI46_00765 0.17 +0.7 174,360 + IAI46_00765 0.17 -0.1 174,367 + IAI46_00765 0.18 -0.2 174,368 - IAI46_00765 0.18 +0.3 174,385 + IAI46_00765 0.20 +0.2 174,386 - IAI46_00765 0.20 -0.0 174,386 - IAI46_00765 0.20 -0.4 174,386 - IAI46_00765 0.20 -0.7 174,386 - IAI46_00765 0.20 -0.8 174,386 - IAI46_00765 0.20 -0.8 174,394 + IAI46_00765 0.21 +0.7 174,394 + IAI46_00765 0.21 -0.3 174,394 + IAI46_00765 0.21 +0.7 174,394 + IAI46_00765 0.21 +0.6 174,394 + IAI46_00765 0.21 +0.4 174,395 - IAI46_00765 0.21 -0.0 174,395 - IAI46_00765 0.21 -0.0 174,395 - IAI46_00765 0.21 +0.3 174,411 + IAI46_00765 0.23 -0.7 174,411 + IAI46_00765 0.23 +0.5 174,411 + IAI46_00765 0.23 -0.0 174,436 + IAI46_00765 0.26 -1.0 174,436 + IAI46_00765 0.26 +1.2 174,436 + IAI46_00765 0.26 -0.3 174,437 - IAI46_00765 0.26 +0.3 174,544 + IAI46_00765 0.38 -0.1 174,544 + IAI46_00765 0.38 +0.5 174,544 + IAI46_00765 0.38 +0.3 174,545 - IAI46_00765 0.38 +1.0 174,545 - IAI46_00765 0.38 -0.1 174,545 - IAI46_00765 0.38 +0.7 174,545 - IAI46_00765 0.38 +0.2 174,546 + IAI46_00765 0.38 +0.6 174,547 - IAI46_00765 0.38 -0.3 174,547 - IAI46_00765 0.38 -0.4 174,610 + IAI46_00765 0.45 -0.0 174,610 + IAI46_00765 0.45 +0.2 174,610 + IAI46_00765 0.45 -0.7 174,611 - IAI46_00765 0.46 -0.3 174,611 - IAI46_00765 0.46 -1.0 174,756 + IAI46_00765 0.62 -0.3 174,757 - IAI46_00765 0.62 +1.0 174,757 - IAI46_00765 0.62 -0.1 174,757 - IAI46_00765 0.62 -0.2 174,850 + IAI46_00765 0.73 -0.4 174,850 + IAI46_00765 0.73 +0.9 174,850 + IAI46_00765 0.73 -0.2 174,850 + IAI46_00765 0.73 +0.1 174,851 - IAI46_00765 0.73 +0.4 174,851 - IAI46_00765 0.73 -0.1 174,851 - IAI46_00765 0.73 +0.4 174,851 - IAI46_00765 0.73 +0.6 174,862 + IAI46_00765 0.74 -1.0 174,863 - IAI46_00765 0.74 -0.5 174,880 + IAI46_00765 0.76 -0.1 174,881 - IAI46_00765 0.76 -0.0 174,919 + IAI46_00765 0.81 -0.1 174,919 + IAI46_00765 0.81 +0.5 174,920 - IAI46_00765 0.81 +0.4 174,920 - IAI46_00765 0.81 -1.0 174,920 - IAI46_00765 0.81 +0.4 174,920 - IAI46_00765 0.81 -0.2 174,920 - IAI46_00765 0.81 -0.9 174,922 - IAI46_00765 0.81 +1.7 174,922 - IAI46_00765 0.81 -0.3 174,922 - IAI46_00765 0.81 +0.0 174,991 + IAI46_00765 0.89 +0.3 174,991 + IAI46_00765 0.89 +0.1 175,034 - -0.6 175,080 + -1.0 175,080 + -0.8 175,080 + +1.0 175,080 + +0.5 175,080 + +0.4 175,080 + +0.9 175,081 - +0.4 175,081 - +0.5 175,081 - +0.8 175,081 - +0.4 175,081 - +0.0 175,083 + +0.9 175,083 + -0.3 175,083 + +0.7 175,083 + +1.7 175,083 + +0.2 175,083 + +0.0 175,084 - +0.8 175,084 - -0.3 175,084 - +0.3 175,087 + -0.1 175,087 + -0.0 175,184 + -0.3 175,184 + +0.5 175,184 + -0.3 175,195 - +1.1 175,195 - +0.2 175,275 + -0.1 175,276 - -0.3 175,276 - -0.5 175,306 + -0.2 175,306 + -0.1 175,307 - -0.5 175,344 - IAI46_00770 0.11 +0.6 175,344 - IAI46_00770 0.11 -2.4 175,399 + IAI46_00770 0.14 -0.3 175,420 + IAI46_00770 0.15 +0.1 175,423 - IAI46_00770 0.16 +0.2 175,423 - IAI46_00770 0.16 -0.4 175,495 + IAI46_00770 0.19 +0.2 175,495 + IAI46_00770 0.19 +0.9 175,495 + IAI46_00770 0.19 +0.2 175,496 - IAI46_00770 0.20 +0.3 175,587 + IAI46_00770 0.24 -0.6 175,587 + IAI46_00770 0.24 -0.1 175,587 + IAI46_00770 0.24 -0.3 175,587 + IAI46_00770 0.24 -0.3 175,588 - IAI46_00770 0.25 -0.6 175,588 - IAI46_00770 0.25 +0.6 175,588 - IAI46_00770 0.25 -0.7 175,588 - IAI46_00770 0.25 -0.1 175,621 + IAI46_00770 0.26 -0.0 175,621 + IAI46_00770 0.26 -1.0 175,621 + IAI46_00770 0.26 +0.3 175,698 + IAI46_00770 0.31 +0.1 175,746 - IAI46_00770 0.33 -0.4 175,780 + IAI46_00770 0.35 -1.1 175,781 - IAI46_00770 0.35 -0.9 175,782 + IAI46_00770 0.35 -0.2 175,782 + IAI46_00770 0.35 +0.4 175,782 + IAI46_00770 0.35 +1.5 175,782 + IAI46_00770 0.35 -0.4 175,783 - IAI46_00770 0.35 +0.0 175,783 - IAI46_00770 0.35 -1.4 175,783 - IAI46_00770 0.35 +0.6 175,800 + IAI46_00770 0.36 -3.1 175,801 - IAI46_00770 0.36 -1.0 175,829 + IAI46_00770 0.38 +0.7 175,829 + IAI46_00770 0.38 +0.7 175,857 + IAI46_00770 0.39 -1.4 175,857 + IAI46_00770 0.39 -1.3 175,858 - IAI46_00770 0.39 +0.5 175,998 - IAI46_00770 0.47 -0.5 176,041 - IAI46_00770 0.49 -0.5
Or see this region's nucleotide sequence