Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00605 and IAI46_00610 overlap by 10 nucleotides IAI46_00610 and IAI46_00615 are separated by 48 nucleotides IAI46_00615 and IAI46_00620 overlap by 23 nucleotides
IAI46_00605: IAI46_00605 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 143,563 to 144,825
_00605
IAI46_00610: IAI46_00610 - dTDP-glucose 4,6-dehydratase, at 144,816 to 145,889
_00610
IAI46_00615: IAI46_00615 - glucose-1-phosphate thymidylyltransferase RfbA, at 145,938 to 146,819
_00615
IAI46_00620: IAI46_00620 - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 146,797 to 147,528
_00620
Position (kb) 144
145
146 Strain fitness (log2 ratio) -1
0
1
2 at 143.851 kb on + strand, within IAI46_00605 at 144.029 kb on - strand, within IAI46_00605 at 144.029 kb on - strand, within IAI46_00605 at 144.324 kb on + strand, within IAI46_00605 at 144.360 kb on + strand, within IAI46_00605 at 144.382 kb on - strand, within IAI46_00605 at 144.606 kb on - strand, within IAI46_00605 at 144.750 kb on + strand at 144.800 kb on + strand at 144.800 kb on + strand at 144.800 kb on + strand at 144.801 kb on - strand at 144.801 kb on - strand at 144.801 kb on - strand at 144.804 kb on + strand at 144.804 kb on + strand at 144.835 kb on + strand at 145.137 kb on + strand, within IAI46_00610 at 145.215 kb on - strand, within IAI46_00610 at 145.215 kb on - strand, within IAI46_00610 at 145.353 kb on + strand, within IAI46_00610 at 145.353 kb on + strand, within IAI46_00610 at 145.567 kb on - strand, within IAI46_00610 at 145.715 kb on + strand, within IAI46_00610 at 145.857 kb on + strand at 145.857 kb on + strand at 145.857 kb on + strand at 145.858 kb on - strand at 145.887 kb on + strand at 145.893 kb on + strand at 145.938 kb on - strand at 145.946 kb on + strand at 145.950 kb on - strand at 145.950 kb on - strand at 145.950 kb on - strand at 146.023 kb on - strand at 146.040 kb on + strand, within IAI46_00615 at 146.040 kb on + strand, within IAI46_00615 at 146.040 kb on + strand, within IAI46_00615 at 146.040 kb on + strand, within IAI46_00615 at 146.041 kb on - strand, within IAI46_00615 at 146.157 kb on - strand, within IAI46_00615 at 146.167 kb on - strand, within IAI46_00615 at 146.167 kb on - strand, within IAI46_00615 at 146.210 kb on - strand, within IAI46_00615 at 146.264 kb on + strand, within IAI46_00615 at 146.265 kb on - strand, within IAI46_00615 at 146.316 kb on - strand, within IAI46_00615 at 146.388 kb on - strand, within IAI46_00615 at 146.458 kb on - strand, within IAI46_00615 at 146.529 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.548 kb on - strand, within IAI46_00615 at 146.676 kb on - strand, within IAI46_00615 at 146.779 kb on - strand at 146.779 kb on - strand at 146.779 kb on - strand at 146.791 kb on + strand at 146.792 kb on - strand at 146.825 kb on + strand at 146.826 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 143,851 + IAI46_00605 0.23 +0.3 144,029 - IAI46_00605 0.37 +2.4 144,029 - IAI46_00605 0.37 -0.7 144,324 + IAI46_00605 0.60 +1.0 144,360 + IAI46_00605 0.63 -0.5 144,382 - IAI46_00605 0.65 +1.1 144,606 - IAI46_00605 0.83 +1.3 144,750 + -0.4 144,800 + +0.6 144,800 + +1.3 144,800 + -0.9 144,801 - +0.3 144,801 - -1.0 144,801 - -0.4 144,804 + -0.6 144,804 + +0.7 144,835 + -0.6 145,137 + IAI46_00610 0.30 -0.2 145,215 - IAI46_00610 0.37 +0.3 145,215 - IAI46_00610 0.37 +1.1 145,353 + IAI46_00610 0.50 -0.9 145,353 + IAI46_00610 0.50 -0.6 145,567 - IAI46_00610 0.70 -0.2 145,715 + IAI46_00610 0.84 +0.1 145,857 + -0.7 145,857 + -1.1 145,857 + +0.2 145,858 - +0.9 145,887 + +0.7 145,893 + -1.5 145,938 - +1.0 145,946 + -0.6 145,950 - -0.2 145,950 - +0.8 145,950 - +0.9 146,023 - +2.0 146,040 + IAI46_00615 0.12 +0.4 146,040 + IAI46_00615 0.12 +0.1 146,040 + IAI46_00615 0.12 +0.6 146,040 + IAI46_00615 0.12 +0.4 146,041 - IAI46_00615 0.12 +1.2 146,157 - IAI46_00615 0.25 +0.4 146,167 - IAI46_00615 0.26 +0.6 146,167 - IAI46_00615 0.26 +1.5 146,210 - IAI46_00615 0.31 +0.2 146,264 + IAI46_00615 0.37 -0.9 146,265 - IAI46_00615 0.37 +0.8 146,316 - IAI46_00615 0.43 -1.5 146,388 - IAI46_00615 0.51 -0.4 146,458 - IAI46_00615 0.59 +1.1 146,529 - IAI46_00615 0.67 +2.4 146,548 - IAI46_00615 0.69 -0.2 146,548 - IAI46_00615 0.69 +1.4 146,548 - IAI46_00615 0.69 +2.1 146,676 - IAI46_00615 0.84 +0.5 146,779 - +1.2 146,779 - -0.1 146,779 - -0.5 146,791 + -0.5 146,792 - -1.4 146,825 + -0.1 146,826 - +0.8
Or see this region's nucleotide sequence