Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00445 and IAI46_00450 are separated by 120 nucleotides IAI46_00450 and IAI46_00460 are separated by 215 nucleotides IAI46_00460 and IAI46_00465 overlap by 13 nucleotides IAI46_00465 and IAI46_00470 are separated by 377 nucleotides
IAI46_00445: IAI46_00445 - MFS transporter, at 101,250 to 102,581
_00445
IAI46_00450: IAI46_00450 - tRNA-Pro, at 102,702 to 102,778
_00450
IAI46_00460: IAI46_00460 - transcriptional regulator, at 102,994 to 103,350
_00460
IAI46_00465: IAI46_00465 - hypothetical protein, at 103,338 to 103,634
_00465
IAI46_00470: IAI46_00470 - chitinase, at 104,012 to 105,703
_00470
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.417 kb on + strand, within IAI46_00445 at 102.607 kb on + strand at 102.618 kb on - strand at 102.629 kb on - strand at 102.671 kb on - strand at 102.685 kb on + strand at 102.685 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.797 kb on + strand at 102.798 kb on - strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.822 kb on + strand at 102.823 kb on - strand at 102.823 kb on - strand at 102.823 kb on - strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.824 kb on + strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.825 kb on - strand at 102.826 kb on + strand at 102.826 kb on + strand at 102.826 kb on + strand at 102.827 kb on - strand at 102.827 kb on - strand at 102.827 kb on - strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.828 kb on + strand at 102.829 kb on - strand at 102.829 kb on - strand at 102.829 kb on - strand at 102.922 kb on - strand at 102.959 kb on + strand at 102.962 kb on - strand at 102.984 kb on + strand at 103.013 kb on - strand at 103.038 kb on - strand, within IAI46_00460 at 103.038 kb on - strand, within IAI46_00460 at 103.048 kb on - strand, within IAI46_00460 at 103.048 kb on - strand, within IAI46_00460 at 103.065 kb on + strand, within IAI46_00460 at 103.066 kb on - strand, within IAI46_00460 at 103.088 kb on - strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.104 kb on + strand, within IAI46_00460 at 103.105 kb on - strand, within IAI46_00460 at 103.105 kb on - strand, within IAI46_00460 at 103.109 kb on - strand, within IAI46_00460 at 103.130 kb on - strand, within IAI46_00460 at 103.130 kb on - strand, within IAI46_00460 at 103.158 kb on + strand, within IAI46_00460 at 103.158 kb on + strand, within IAI46_00460 at 103.159 kb on - strand, within IAI46_00460 at 103.159 kb on - strand, within IAI46_00460 at 103.177 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.217 kb on + strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.218 kb on - strand, within IAI46_00460 at 103.244 kb on - strand, within IAI46_00460 at 103.306 kb on + strand, within IAI46_00460 at 103.327 kb on + strand at 103.327 kb on + strand at 103.327 kb on + strand at 103.327 kb on + strand at 103.328 kb on - strand at 103.328 kb on - strand at 103.328 kb on - strand at 103.333 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.362 kb on + strand at 103.363 kb on - strand at 103.363 kb on - strand at 103.363 kb on - strand at 103.403 kb on + strand, within IAI46_00465 at 103.448 kb on + strand, within IAI46_00465 at 103.448 kb on + strand, within IAI46_00465 at 103.449 kb on - strand, within IAI46_00465 at 103.449 kb on - strand, within IAI46_00465 at 103.478 kb on - strand, within IAI46_00465 at 103.482 kb on + strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.483 kb on - strand, within IAI46_00465 at 103.485 kb on + strand, within IAI46_00465 at 103.486 kb on - strand, within IAI46_00465 at 103.507 kb on + strand, within IAI46_00465 at 103.507 kb on + strand, within IAI46_00465 at 103.519 kb on + strand, within IAI46_00465 at 103.519 kb on + strand, within IAI46_00465 at 103.525 kb on + strand, within IAI46_00465 at 103.525 kb on + strand, within IAI46_00465 at 103.545 kb on + strand, within IAI46_00465 at 103.546 kb on - strand, within IAI46_00465 at 103.592 kb on + strand, within IAI46_00465 at 103.592 kb on + strand, within IAI46_00465 at 103.593 kb on - strand, within IAI46_00465 at 103.604 kb on + strand, within IAI46_00465 at 103.605 kb on - strand at 103.605 kb on - strand at 103.605 kb on - strand at 103.605 kb on - strand at 103.617 kb on + strand at 103.661 kb on + strand at 103.812 kb on + strand at 103.838 kb on + strand at 103.970 kb on + strand at 103.971 kb on - strand at 103.974 kb on + strand at 104.099 kb on - strand at 104.159 kb on + strand at 104.162 kb on - strand at 104.164 kb on + strand at 104.165 kb on - strand at 104.179 kb on - strand at 104.254 kb on - strand, within IAI46_00470 at 104.372 kb on - strand, within IAI46_00470 at 104.408 kb on - strand, within IAI46_00470 at 104.408 kb on - strand, within IAI46_00470 at 104.408 kb on - strand, within IAI46_00470 at 104.433 kb on + strand, within IAI46_00470 at 104.434 kb on - strand, within IAI46_00470 at 104.465 kb on + strand, within IAI46_00470 at 104.465 kb on + strand, within IAI46_00470 at 104.465 kb on + strand, within IAI46_00470 at 104.465 kb on + strand, within IAI46_00470 at 104.466 kb on - strand, within IAI46_00470 at 104.466 kb on - strand, within IAI46_00470 at 104.467 kb on + strand, within IAI46_00470 at 104.467 kb on + strand, within IAI46_00470 at 104.467 kb on + strand, within IAI46_00470 at 104.468 kb on - strand, within IAI46_00470 at 104.498 kb on + strand, within IAI46_00470 at 104.498 kb on + strand, within IAI46_00470 at 104.498 kb on + strand, within IAI46_00470 at 104.519 kb on + strand, within IAI46_00470 at 104.527 kb on + strand, within IAI46_00470 at 104.584 kb on + strand, within IAI46_00470 at 104.584 kb on + strand, within IAI46_00470 at 104.584 kb on + strand, within IAI46_00470
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 102,417 + IAI46_00445 0.88 +0.2 102,607 + -0.1 102,618 - -2.6 102,629 - -0.3 102,671 - -0.5 102,685 + -0.5 102,685 + +0.0 102,797 + -0.6 102,797 + -0.3 102,797 + +0.0 102,797 + +0.2 102,798 - -2.1 102,822 + -0.2 102,822 + +0.2 102,822 + +1.5 102,822 + -0.1 102,822 + +0.6 102,822 + -0.3 102,823 - -1.4 102,823 - -0.5 102,823 - -0.3 102,824 + -0.2 102,824 + +0.6 102,824 + -1.4 102,824 + -0.3 102,824 + +0.6 102,824 + -0.1 102,825 - +0.1 102,825 - +1.1 102,825 - +0.3 102,825 - -0.4 102,826 + +1.5 102,826 + -0.4 102,826 + +0.2 102,827 - -2.5 102,827 - -0.1 102,827 - -0.1 102,828 + +0.6 102,828 + +0.3 102,828 + -0.1 102,828 + -0.1 102,828 + -0.4 102,829 - +0.2 102,829 - -0.4 102,829 - +0.3 102,922 - +0.8 102,959 + +0.2 102,962 - -0.9 102,984 + +0.2 103,013 - -1.6 103,038 - IAI46_00460 0.12 -0.4 103,038 - IAI46_00460 0.12 -1.6 103,048 - IAI46_00460 0.15 +0.6 103,048 - IAI46_00460 0.15 -0.7 103,065 + IAI46_00460 0.20 -0.6 103,066 - IAI46_00460 0.20 +1.6 103,088 - IAI46_00460 0.26 -1.1 103,104 + IAI46_00460 0.31 -0.6 103,104 + IAI46_00460 0.31 +0.2 103,104 + IAI46_00460 0.31 +0.9 103,105 - IAI46_00460 0.31 -0.9 103,105 - IAI46_00460 0.31 +1.4 103,109 - IAI46_00460 0.32 +0.4 103,130 - IAI46_00460 0.38 -0.3 103,130 - IAI46_00460 0.38 +2.2 103,158 + IAI46_00460 0.46 -0.5 103,158 + IAI46_00460 0.46 +0.6 103,159 - IAI46_00460 0.46 +0.5 103,159 - IAI46_00460 0.46 -0.3 103,177 + IAI46_00460 0.51 -0.5 103,217 + IAI46_00460 0.62 -0.4 103,217 + IAI46_00460 0.62 -0.9 103,217 + IAI46_00460 0.62 +0.6 103,217 + IAI46_00460 0.62 -0.1 103,218 - IAI46_00460 0.63 +0.9 103,218 - IAI46_00460 0.63 +0.1 103,218 - IAI46_00460 0.63 -0.7 103,218 - IAI46_00460 0.63 -0.3 103,218 - IAI46_00460 0.63 -2.1 103,244 - IAI46_00460 0.70 -1.5 103,306 + IAI46_00460 0.87 +0.2 103,327 + +0.6 103,327 + +0.2 103,327 + -0.7 103,327 + -0.7 103,328 - +1.0 103,328 - -1.1 103,328 - -0.0 103,333 + +2.0 103,362 + +0.8 103,362 + -0.3 103,362 + +0.7 103,362 + +1.8 103,363 - +0.4 103,363 - +1.6 103,363 - +0.0 103,403 + IAI46_00465 0.22 +0.6 103,448 + IAI46_00465 0.37 +0.4 103,448 + IAI46_00465 0.37 +0.5 103,449 - IAI46_00465 0.37 -0.7 103,449 - IAI46_00465 0.37 +1.6 103,478 - IAI46_00465 0.47 -0.3 103,482 + IAI46_00465 0.48 +0.5 103,483 - IAI46_00465 0.49 +1.0 103,483 - IAI46_00465 0.49 +0.4 103,483 - IAI46_00465 0.49 -0.4 103,485 + IAI46_00465 0.49 -0.0 103,486 - IAI46_00465 0.50 -0.9 103,507 + IAI46_00465 0.57 -1.1 103,507 + IAI46_00465 0.57 -1.4 103,519 + IAI46_00465 0.61 -0.1 103,519 + IAI46_00465 0.61 +1.0 103,525 + IAI46_00465 0.63 +0.7 103,525 + IAI46_00465 0.63 +0.6 103,545 + IAI46_00465 0.70 +0.8 103,546 - IAI46_00465 0.70 +1.2 103,592 + IAI46_00465 0.86 -2.6 103,592 + IAI46_00465 0.86 -0.7 103,593 - IAI46_00465 0.86 +0.1 103,604 + IAI46_00465 0.90 +0.3 103,605 - +0.8 103,605 - +0.2 103,605 - -0.2 103,605 - +0.7 103,617 + -0.4 103,661 + +0.2 103,812 + +0.1 103,838 + +0.2 103,970 + +0.1 103,971 - +0.6 103,974 + -1.1 104,099 - +1.5 104,159 + +0.8 104,162 - -0.6 104,164 + +0.3 104,165 - +0.2 104,179 - -0.7 104,254 - IAI46_00470 0.14 +1.0 104,372 - IAI46_00470 0.21 -0.8 104,408 - IAI46_00470 0.23 +0.1 104,408 - IAI46_00470 0.23 +0.6 104,408 - IAI46_00470 0.23 -1.0 104,433 + IAI46_00470 0.25 +1.1 104,434 - IAI46_00470 0.25 -0.8 104,465 + IAI46_00470 0.27 -0.2 104,465 + IAI46_00470 0.27 +0.8 104,465 + IAI46_00470 0.27 +0.3 104,465 + IAI46_00470 0.27 +0.7 104,466 - IAI46_00470 0.27 -0.1 104,466 - IAI46_00470 0.27 -0.5 104,467 + IAI46_00470 0.27 -0.1 104,467 + IAI46_00470 0.27 +0.3 104,467 + IAI46_00470 0.27 -0.3 104,468 - IAI46_00470 0.27 +0.8 104,498 + IAI46_00470 0.29 -0.3 104,498 + IAI46_00470 0.29 +1.0 104,498 + IAI46_00470 0.29 -0.1 104,519 + IAI46_00470 0.30 +1.3 104,527 + IAI46_00470 0.30 -0.3 104,584 + IAI46_00470 0.34 +0.3 104,584 + IAI46_00470 0.34 +0.7 104,584 + IAI46_00470 0.34 +0.1
Or see this region's nucleotide sequence