Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00295 and IAI46_00300 are separated by 313 nucleotides IAI46_00300 and IAI46_00305 are separated by 67 nucleotides IAI46_00305 and IAI46_00310 overlap by 50 nucleotides
IAI46_00295: IAI46_00295 - sugar ABC transporter permease, at 69,214 to 70,398
_00295
IAI46_00300: IAI46_00300 - DNA-binding transcriptional regulator, at 70,712 to 71,890
_00300
IAI46_00305: IAI46_00305 - nucleotidyltransferase domain-containing protein, at 71,958 to 72,578
_00305
IAI46_00310: IAI46_00310 - DNA-binding protein, at 72,529 to 72,969
_00310
Position (kb) 70
71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.743 kb on - strand, within IAI46_00295 at 69.743 kb on - strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.830 kb on + strand, within IAI46_00295 at 69.900 kb on - strand, within IAI46_00295 at 69.942 kb on + strand, within IAI46_00295 at 69.942 kb on + strand, within IAI46_00295 at 69.984 kb on - strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.987 kb on + strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 69.988 kb on - strand, within IAI46_00295 at 70.021 kb on + strand, within IAI46_00295 at 70.038 kb on + strand, within IAI46_00295 at 70.039 kb on - strand, within IAI46_00295 at 70.039 kb on - strand, within IAI46_00295 at 70.177 kb on - strand, within IAI46_00295 at 70.238 kb on + strand, within IAI46_00295 at 70.239 kb on - strand, within IAI46_00295 at 70.272 kb on + strand, within IAI46_00295 at 70.273 kb on - strand, within IAI46_00295 at 70.330 kb on + strand at 70.330 kb on + strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.331 kb on - strand at 70.397 kb on - strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.402 kb on + strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.403 kb on - strand at 70.404 kb on + strand at 70.405 kb on - strand at 70.405 kb on - strand at 70.405 kb on - strand at 70.413 kb on + strand at 70.413 kb on + strand at 70.414 kb on - strand at 70.414 kb on - strand at 70.438 kb on + strand at 70.438 kb on + strand at 70.466 kb on + strand at 70.467 kb on - strand at 70.469 kb on + strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.470 kb on - strand at 70.504 kb on + strand at 70.504 kb on + strand at 70.505 kb on - strand at 70.505 kb on - strand at 70.516 kb on + strand at 70.517 kb on - strand at 70.517 kb on - strand at 70.527 kb on + strand at 70.527 kb on + strand at 70.528 kb on - strand at 70.528 kb on - strand at 70.546 kb on + strand at 70.546 kb on + strand at 70.547 kb on - strand at 70.547 kb on - strand at 70.585 kb on + strand at 70.635 kb on - strand at 70.676 kb on + strand at 70.688 kb on - strand at 70.735 kb on + strand at 70.735 kb on + strand at 70.735 kb on + strand at 70.736 kb on - strand at 70.736 kb on - strand at 70.757 kb on - strand at 70.763 kb on + strand at 70.763 kb on + strand at 70.764 kb on - strand at 70.796 kb on + strand at 70.797 kb on - strand at 70.800 kb on + strand at 70.801 kb on - strand at 70.832 kb on - strand, within IAI46_00300 at 70.933 kb on + strand, within IAI46_00300 at 70.934 kb on - strand, within IAI46_00300 at 70.934 kb on - strand, within IAI46_00300 at 70.970 kb on + strand, within IAI46_00300 at 70.970 kb on + strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.971 kb on - strand, within IAI46_00300 at 70.989 kb on - strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.003 kb on + strand, within IAI46_00300 at 71.004 kb on - strand, within IAI46_00300 at 71.004 kb on - strand, within IAI46_00300 at 71.069 kb on - strand, within IAI46_00300 at 71.069 kb on - strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.084 kb on + strand, within IAI46_00300 at 71.107 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.165 kb on + strand, within IAI46_00300 at 71.180 kb on + strand, within IAI46_00300 at 71.244 kb on + strand, within IAI46_00300 at 71.387 kb on + strand, within IAI46_00300 at 71.387 kb on + strand, within IAI46_00300 at 71.500 kb on + strand, within IAI46_00300 at 71.501 kb on - strand, within IAI46_00300 at 71.501 kb on - strand, within IAI46_00300 at 71.501 kb on - strand, within IAI46_00300 at 71.588 kb on + strand, within IAI46_00300 at 71.588 kb on + strand, within IAI46_00300 at 71.588 kb on + strand, within IAI46_00300 at 71.588 kb on + strand, within IAI46_00300 at 71.589 kb on - strand, within IAI46_00300 at 71.589 kb on - strand, within IAI46_00300 at 71.590 kb on + strand, within IAI46_00300 at 71.608 kb on + strand, within IAI46_00300 at 71.609 kb on - strand, within IAI46_00300 at 71.609 kb on - strand, within IAI46_00300 at 71.614 kb on + strand, within IAI46_00300 at 71.615 kb on - strand, within IAI46_00300 at 71.644 kb on - strand, within IAI46_00300 at 71.709 kb on + strand, within IAI46_00300 at 71.709 kb on + strand, within IAI46_00300 at 71.709 kb on + strand, within IAI46_00300 at 71.709 kb on + strand, within IAI46_00300 at 71.710 kb on - strand, within IAI46_00300 at 71.710 kb on - strand, within IAI46_00300 at 71.741 kb on - strand, within IAI46_00300 at 71.749 kb on - strand, within IAI46_00300 at 71.795 kb on + strand at 71.810 kb on + strand at 71.817 kb on - strand at 71.871 kb on - strand at 71.885 kb on + strand at 71.886 kb on - strand at 71.888 kb on + strand at 71.888 kb on + strand at 71.888 kb on + strand at 71.889 kb on - strand at 71.933 kb on + strand at 71.934 kb on - strand at 71.937 kb on - strand at 71.937 kb on - strand at 71.942 kb on + strand at 71.961 kb on + strand at 71.961 kb on + strand at 72.023 kb on - strand, within IAI46_00305 at 72.023 kb on - strand, within IAI46_00305 at 72.087 kb on - strand, within IAI46_00305 at 72.134 kb on - strand, within IAI46_00305 at 72.160 kb on - strand, within IAI46_00305 at 72.251 kb on - strand, within IAI46_00305 at 72.312 kb on - strand, within IAI46_00305 at 72.335 kb on - strand, within IAI46_00305 at 72.335 kb on - strand, within IAI46_00305 at 72.335 kb on - strand, within IAI46_00305 at 72.335 kb on - strand, within IAI46_00305 at 72.388 kb on - strand, within IAI46_00305 at 72.433 kb on - strand, within IAI46_00305 at 72.480 kb on - strand, within IAI46_00305 at 72.489 kb on - strand, within IAI46_00305 at 72.489 kb on - strand, within IAI46_00305 at 72.492 kb on - strand, within IAI46_00305 at 72.492 kb on - strand, within IAI46_00305 at 72.498 kb on - strand, within IAI46_00305 at 72.498 kb on - strand, within IAI46_00305 at 72.509 kb on - strand, within IAI46_00305 at 72.509 kb on - strand, within IAI46_00305 at 72.537 kb on - strand at 72.548 kb on + strand at 72.548 kb on + strand at 72.548 kb on + strand at 72.549 kb on - strand at 72.569 kb on + strand at 72.569 kb on + strand at 72.569 kb on + strand at 72.569 kb on + strand at 72.570 kb on - strand at 72.570 kb on - strand at 72.570 kb on - strand at 72.570 kb on - strand at 72.648 kb on + strand, within IAI46_00310 at 72.649 kb on - strand, within IAI46_00310 at 72.649 kb on - strand, within IAI46_00310 at 72.676 kb on + strand, within IAI46_00310 at 72.676 kb on + strand, within IAI46_00310 at 72.676 kb on + strand, within IAI46_00310 at 72.676 kb on + strand, within IAI46_00310 at 72.677 kb on - strand, within IAI46_00310 at 72.678 kb on + strand, within IAI46_00310 at 72.679 kb on - strand, within IAI46_00310 at 72.741 kb on + strand, within IAI46_00310 at 72.741 kb on + strand, within IAI46_00310 at 72.741 kb on + strand, within IAI46_00310 at 72.742 kb on - strand, within IAI46_00310 at 72.742 kb on - strand, within IAI46_00310 at 72.742 kb on - strand, within IAI46_00310 at 72.761 kb on + strand, within IAI46_00310 at 72.762 kb on - strand, within IAI46_00310 at 72.853 kb on + strand, within IAI46_00310 at 72.853 kb on + strand, within IAI46_00310 at 72.854 kb on - strand, within IAI46_00310 at 72.854 kb on - strand, within IAI46_00310 at 72.854 kb on - strand, within IAI46_00310 at 72.857 kb on + strand, within IAI46_00310 at 72.857 kb on + strand, within IAI46_00310 at 72.857 kb on + strand, within IAI46_00310 at 72.857 kb on + strand, within IAI46_00310 at 72.858 kb on - strand, within IAI46_00310 at 72.866 kb on + strand, within IAI46_00310 at 72.866 kb on + strand, within IAI46_00310 at 72.867 kb on - strand, within IAI46_00310 at 72.886 kb on + strand, within IAI46_00310 at 72.886 kb on + strand, within IAI46_00310 at 72.886 kb on + strand, within IAI46_00310 at 72.886 kb on + strand, within IAI46_00310 at 72.887 kb on - strand, within IAI46_00310 at 72.887 kb on - strand, within IAI46_00310 at 72.887 kb on - strand, within IAI46_00310 at 72.887 kb on - strand, within IAI46_00310
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 69,743 - IAI46_00295 0.45 +1.9 69,743 - IAI46_00295 0.45 -0.3 69,830 + IAI46_00295 0.52 -0.3 69,830 + IAI46_00295 0.52 +0.0 69,830 + IAI46_00295 0.52 +0.3 69,900 - IAI46_00295 0.58 -0.7 69,942 + IAI46_00295 0.61 +1.0 69,942 + IAI46_00295 0.61 -0.0 69,984 - IAI46_00295 0.65 -1.1 69,987 + IAI46_00295 0.65 -0.5 69,987 + IAI46_00295 0.65 +0.4 69,987 + IAI46_00295 0.65 -0.3 69,988 - IAI46_00295 0.65 +1.0 69,988 - IAI46_00295 0.65 +0.7 69,988 - IAI46_00295 0.65 -0.2 70,021 + IAI46_00295 0.68 -0.3 70,038 + IAI46_00295 0.70 +0.7 70,039 - IAI46_00295 0.70 +0.7 70,039 - IAI46_00295 0.70 +0.5 70,177 - IAI46_00295 0.81 +0.1 70,238 + IAI46_00295 0.86 +0.4 70,239 - IAI46_00295 0.86 +0.3 70,272 + IAI46_00295 0.89 +0.2 70,273 - IAI46_00295 0.89 -0.9 70,330 + +0.4 70,330 + -0.1 70,331 - +1.2 70,331 - -0.3 70,331 - +0.1 70,331 - -1.3 70,397 - -0.1 70,402 + -1.5 70,402 + -0.2 70,402 + +0.7 70,402 + +0.1 70,402 + -0.2 70,402 + +1.0 70,402 + +0.1 70,402 + -0.5 70,402 + +0.2 70,402 + -0.6 70,402 + +0.0 70,403 - +1.2 70,403 - -0.2 70,403 - -0.2 70,403 - +1.0 70,403 - +0.5 70,403 - -0.3 70,404 + +0.3 70,405 - -0.2 70,405 - -0.6 70,405 - +1.3 70,413 + +0.1 70,413 + +1.1 70,414 - -0.9 70,414 - +0.4 70,438 + +0.4 70,438 + -0.3 70,466 + -0.2 70,467 - +0.3 70,469 + +0.5 70,470 - -0.3 70,470 - -0.7 70,470 - -0.3 70,504 + -0.3 70,504 + +0.3 70,505 - +0.4 70,505 - -0.6 70,516 + -1.2 70,517 - -1.0 70,517 - +0.1 70,527 + +0.3 70,527 + -2.2 70,528 - +1.0 70,528 - +1.2 70,546 + -0.3 70,546 + +0.4 70,547 - +0.4 70,547 - +0.8 70,585 + +1.3 70,635 - +0.5 70,676 + -0.0 70,688 - -0.2 70,735 + -0.3 70,735 + +1.8 70,735 + +0.9 70,736 - +0.1 70,736 - -0.5 70,757 - +0.1 70,763 + -0.4 70,763 + +0.2 70,764 - -0.8 70,796 + +0.4 70,797 - +0.4 70,800 + -1.2 70,801 - +0.4 70,832 - IAI46_00300 0.10 +0.8 70,933 + IAI46_00300 0.19 -0.3 70,934 - IAI46_00300 0.19 +0.5 70,934 - IAI46_00300 0.19 -0.3 70,970 + IAI46_00300 0.22 -2.8 70,970 + IAI46_00300 0.22 -1.0 70,971 - IAI46_00300 0.22 -0.4 70,971 - IAI46_00300 0.22 -1.0 70,971 - IAI46_00300 0.22 +0.7 70,989 - IAI46_00300 0.23 +0.3 71,003 + IAI46_00300 0.25 -0.2 71,003 + IAI46_00300 0.25 -0.0 71,003 + IAI46_00300 0.25 -0.1 71,004 - IAI46_00300 0.25 -0.8 71,004 - IAI46_00300 0.25 -0.2 71,069 - IAI46_00300 0.30 +1.0 71,069 - IAI46_00300 0.30 -0.5 71,084 + IAI46_00300 0.32 +0.2 71,084 + IAI46_00300 0.32 +0.7 71,084 + IAI46_00300 0.32 +0.3 71,084 + IAI46_00300 0.32 +0.7 71,107 + IAI46_00300 0.34 -1.1 71,165 + IAI46_00300 0.38 -0.1 71,165 + IAI46_00300 0.38 +0.7 71,165 + IAI46_00300 0.38 +0.3 71,180 + IAI46_00300 0.40 -0.6 71,244 + IAI46_00300 0.45 -0.5 71,387 + IAI46_00300 0.57 +0.8 71,387 + IAI46_00300 0.57 -0.2 71,500 + IAI46_00300 0.67 +1.8 71,501 - IAI46_00300 0.67 +0.1 71,501 - IAI46_00300 0.67 +0.1 71,501 - IAI46_00300 0.67 +0.2 71,588 + IAI46_00300 0.74 +0.3 71,588 + IAI46_00300 0.74 +0.7 71,588 + IAI46_00300 0.74 -0.4 71,588 + IAI46_00300 0.74 +1.0 71,589 - IAI46_00300 0.74 +1.2 71,589 - IAI46_00300 0.74 -0.2 71,590 + IAI46_00300 0.74 +0.1 71,608 + IAI46_00300 0.76 -0.6 71,609 - IAI46_00300 0.76 +0.2 71,609 - IAI46_00300 0.76 +0.3 71,614 + IAI46_00300 0.77 -0.8 71,615 - IAI46_00300 0.77 -0.7 71,644 - IAI46_00300 0.79 +0.6 71,709 + IAI46_00300 0.85 +1.0 71,709 + IAI46_00300 0.85 +0.3 71,709 + IAI46_00300 0.85 +0.4 71,709 + IAI46_00300 0.85 +1.1 71,710 - IAI46_00300 0.85 -1.1 71,710 - IAI46_00300 0.85 +0.9 71,741 - IAI46_00300 0.87 +0.2 71,749 - IAI46_00300 0.88 +0.4 71,795 + +0.4 71,810 + +0.1 71,817 - -0.4 71,871 - -0.7 71,885 + +0.5 71,886 - -0.1 71,888 + -0.4 71,888 + -0.9 71,888 + +0.9 71,889 - -0.4 71,933 + -0.4 71,934 - -0.1 71,937 - -0.4 71,937 - -0.4 71,942 + -0.3 71,961 + +0.6 71,961 + +1.3 72,023 - IAI46_00305 0.10 -0.1 72,023 - IAI46_00305 0.10 -0.4 72,087 - IAI46_00305 0.21 +0.4 72,134 - IAI46_00305 0.28 -1.3 72,160 - IAI46_00305 0.33 +0.2 72,251 - IAI46_00305 0.47 +1.9 72,312 - IAI46_00305 0.57 +2.1 72,335 - IAI46_00305 0.61 -0.4 72,335 - IAI46_00305 0.61 +0.1 72,335 - IAI46_00305 0.61 -0.8 72,335 - IAI46_00305 0.61 +0.3 72,388 - IAI46_00305 0.69 -0.0 72,433 - IAI46_00305 0.76 -0.5 72,480 - IAI46_00305 0.84 +0.0 72,489 - IAI46_00305 0.86 -0.7 72,489 - IAI46_00305 0.86 -0.5 72,492 - IAI46_00305 0.86 -0.7 72,492 - IAI46_00305 0.86 -0.7 72,498 - IAI46_00305 0.87 -0.9 72,498 - IAI46_00305 0.87 +0.1 72,509 - IAI46_00305 0.89 -0.8 72,509 - IAI46_00305 0.89 +0.9 72,537 - +1.1 72,548 + +0.4 72,548 + +0.4 72,548 + +0.0 72,549 - -1.0 72,569 + -0.0 72,569 + +0.8 72,569 + -0.0 72,569 + +0.6 72,570 - +0.3 72,570 - -0.1 72,570 - +0.1 72,570 - +0.5 72,648 + IAI46_00310 0.27 +0.5 72,649 - IAI46_00310 0.27 +0.7 72,649 - IAI46_00310 0.27 -0.0 72,676 + IAI46_00310 0.33 +0.2 72,676 + IAI46_00310 0.33 +1.2 72,676 + IAI46_00310 0.33 +0.6 72,676 + IAI46_00310 0.33 -0.2 72,677 - IAI46_00310 0.34 -0.0 72,678 + IAI46_00310 0.34 +0.5 72,679 - IAI46_00310 0.34 +0.0 72,741 + IAI46_00310 0.48 +0.4 72,741 + IAI46_00310 0.48 +0.2 72,741 + IAI46_00310 0.48 -0.0 72,742 - IAI46_00310 0.48 -0.6 72,742 - IAI46_00310 0.48 -0.3 72,742 - IAI46_00310 0.48 +0.6 72,761 + IAI46_00310 0.53 +0.6 72,762 - IAI46_00310 0.53 +0.9 72,853 + IAI46_00310 0.73 +0.0 72,853 + IAI46_00310 0.73 -0.9 72,854 - IAI46_00310 0.74 +0.3 72,854 - IAI46_00310 0.74 +0.2 72,854 - IAI46_00310 0.74 +0.9 72,857 + IAI46_00310 0.74 -0.4 72,857 + IAI46_00310 0.74 +0.8 72,857 + IAI46_00310 0.74 -0.0 72,857 + IAI46_00310 0.74 +0.2 72,858 - IAI46_00310 0.75 +0.4 72,866 + IAI46_00310 0.76 +0.3 72,866 + IAI46_00310 0.76 +0.2 72,867 - IAI46_00310 0.77 -0.6 72,886 + IAI46_00310 0.81 -2.4 72,886 + IAI46_00310 0.81 +0.4 72,886 + IAI46_00310 0.81 +0.5 72,886 + IAI46_00310 0.81 +0.2 72,887 - IAI46_00310 0.81 -0.2 72,887 - IAI46_00310 0.81 +0.3 72,887 - IAI46_00310 0.81 +1.5 72,887 - IAI46_00310 0.81 -0.2
Or see this region's nucleotide sequence