Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4265

Experiment: m.b. Chloride 750 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4263 and Echvi_4264 are separated by 158 nucleotidesEchvi_4264 and Echvi_4265 overlap by 4 nucleotidesEchvi_4265 and Echvi_4266 are separated by 509 nucleotides Echvi_4263: Echvi_4263 - hypothetical protein, at 5,118,551 to 5,119,124 _4263 Echvi_4264: Echvi_4264 - hypothetical protein, at 5,119,283 to 5,119,975 _4264 Echvi_4265: Echvi_4265 - hypothetical protein, at 5,119,972 to 5,120,103 _4265 Echvi_4266: Echvi_4266 - Uncharacterized conserved protein, at 5,120,613 to 5,121,113 _4266 Position (kb) 5119 5120 5121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5118.978 kb on + strand, within Echvi_4263at 5118.978 kb on + strand, within Echvi_4263at 5119.089 kb on + strandat 5119.089 kb on + strandat 5119.153 kb on - strandat 5119.153 kb on - strandat 5119.274 kb on + strandat 5119.275 kb on - strandat 5119.275 kb on - strandat 5119.341 kb on + strandat 5119.342 kb on - strandat 5119.346 kb on - strandat 5119.346 kb on - strandat 5119.545 kb on + strand, within Echvi_4264at 5119.563 kb on + strand, within Echvi_4264at 5119.563 kb on + strand, within Echvi_4264at 5119.564 kb on - strand, within Echvi_4264at 5119.567 kb on + strand, within Echvi_4264at 5119.567 kb on + strand, within Echvi_4264at 5119.567 kb on + strand, within Echvi_4264at 5119.567 kb on + strand, within Echvi_4264at 5119.568 kb on - strand, within Echvi_4264at 5119.609 kb on + strand, within Echvi_4264at 5119.609 kb on + strand, within Echvi_4264at 5119.609 kb on + strand, within Echvi_4264at 5119.610 kb on - strand, within Echvi_4264at 5119.632 kb on + strand, within Echvi_4264at 5119.633 kb on - strand, within Echvi_4264at 5119.759 kb on + strand, within Echvi_4264at 5119.775 kb on - strand, within Echvi_4264at 5119.820 kb on + strand, within Echvi_4264at 5119.821 kb on - strand, within Echvi_4264at 5119.850 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.996 kb on + strand, within Echvi_4265at 5119.996 kb on + strand, within Echvi_4265at 5120.005 kb on + strand, within Echvi_4265at 5120.106 kb on + strandat 5120.106 kb on + strandat 5120.107 kb on - strandat 5120.107 kb on - strandat 5120.119 kb on + strandat 5120.128 kb on - strandat 5120.128 kb on - strandat 5120.128 kb on - strandat 5120.130 kb on - strandat 5120.132 kb on + strandat 5120.173 kb on + strandat 5120.215 kb on - strandat 5120.218 kb on - strandat 5120.261 kb on - strandat 5120.263 kb on + strandat 5120.263 kb on + strandat 5120.264 kb on - strandat 5120.264 kb on - strandat 5120.432 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.473 kb on + strandat 5120.474 kb on - strandat 5120.480 kb on + strandat 5120.593 kb on + strandat 5120.621 kb on + strandat 5120.673 kb on - strand, within Echvi_4266at 5120.690 kb on + strand, within Echvi_4266at 5120.690 kb on + strand, within Echvi_4266at 5120.691 kb on - strand, within Echvi_4266at 5120.798 kb on + strand, within Echvi_4266at 5120.799 kb on - strand, within Echvi_4266at 5120.848 kb on - strand, within Echvi_4266at 5120.858 kb on + strand, within Echvi_4266at 5120.866 kb on + strand, within Echvi_4266at 5120.876 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.905 kb on - strand, within Echvi_4266at 5120.960 kb on + strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5121.022 kb on - strand, within Echvi_4266at 5121.048 kb on - strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.066 kb on - strandat 5121.066 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
remove
5,118,978 + Echvi_4263 0.74 +0.1
5,118,978 + Echvi_4263 0.74 -1.4
5,119,089 + +0.1
5,119,089 + +1.6
5,119,153 - -1.2
5,119,153 - +0.1
5,119,274 + +0.8
5,119,275 - +0.1
5,119,275 - -1.2
5,119,341 + +2.4
5,119,342 - +0.2
5,119,346 - -0.6
5,119,346 - +0.9
5,119,545 + Echvi_4264 0.38 -0.3
5,119,563 + Echvi_4264 0.40 -2.2
5,119,563 + Echvi_4264 0.40 -0.5
5,119,564 - Echvi_4264 0.41 -0.5
5,119,567 + Echvi_4264 0.41 -0.6
5,119,567 + Echvi_4264 0.41 -0.0
5,119,567 + Echvi_4264 0.41 -0.4
5,119,567 + Echvi_4264 0.41 -0.2
5,119,568 - Echvi_4264 0.41 +0.3
5,119,609 + Echvi_4264 0.47 -1.6
5,119,609 + Echvi_4264 0.47 -0.6
5,119,609 + Echvi_4264 0.47 +1.5
5,119,610 - Echvi_4264 0.47 +0.8
5,119,632 + Echvi_4264 0.50 +0.7
5,119,633 - Echvi_4264 0.51 +0.9
5,119,759 + Echvi_4264 0.69 -0.2
5,119,775 - Echvi_4264 0.71 +0.4
5,119,820 + Echvi_4264 0.77 +0.1
5,119,821 - Echvi_4264 0.78 +0.7
5,119,850 + Echvi_4264 0.82 +0.4
5,119,852 + Echvi_4264 0.82 +0.6
5,119,852 + Echvi_4264 0.82 -0.7
5,119,852 + Echvi_4264 0.82 -0.6
5,119,996 + Echvi_4265 0.18 +0.5
5,119,996 + Echvi_4265 0.18 +0.3
5,120,005 + Echvi_4265 0.25 +1.4
5,120,106 + +0.4
5,120,106 + -0.5
5,120,107 - +0.7
5,120,107 - -0.1
5,120,119 + +0.0
5,120,128 - +0.1
5,120,128 - -0.1
5,120,128 - +0.6
5,120,130 - -0.6
5,120,132 + +1.0
5,120,173 + +0.1
5,120,215 - -1.2
5,120,218 - -0.1
5,120,261 - +0.6
5,120,263 + -0.1
5,120,263 + +2.1
5,120,264 - -3.0
5,120,264 - +0.3
5,120,432 + -0.6
5,120,442 + -0.3
5,120,442 + -0.8
5,120,442 + +2.4
5,120,442 + -1.9
5,120,473 + -0.2
5,120,474 - +0.7
5,120,480 + -1.2
5,120,593 + +0.9
5,120,621 + +0.2
5,120,673 - Echvi_4266 0.12 -1.2
5,120,690 + Echvi_4266 0.15 -0.1
5,120,690 + Echvi_4266 0.15 +0.0
5,120,691 - Echvi_4266 0.16 +0.8
5,120,798 + Echvi_4266 0.37 -1.8
5,120,799 - Echvi_4266 0.37 -0.5
5,120,848 - Echvi_4266 0.47 -0.3
5,120,858 + Echvi_4266 0.49 -0.2
5,120,866 + Echvi_4266 0.50 -0.1
5,120,876 + Echvi_4266 0.52 +0.7
5,120,904 + Echvi_4266 0.58 +0.2
5,120,904 + Echvi_4266 0.58 -0.1
5,120,905 - Echvi_4266 0.58 +0.4
5,120,960 + Echvi_4266 0.69 +0.8
5,120,961 - Echvi_4266 0.69 -0.5
5,120,961 - Echvi_4266 0.69 -0.7
5,120,965 + Echvi_4266 0.70 +0.2
5,120,965 + Echvi_4266 0.70 +1.4
5,121,022 - Echvi_4266 0.82 -0.3
5,121,048 - Echvi_4266 0.87 +0.2
5,121,062 + Echvi_4266 0.90 -1.0
5,121,062 + Echvi_4266 0.90 -0.4
5,121,063 - Echvi_4266 0.90 +0.7
5,121,063 - Echvi_4266 0.90 +1.0
5,121,066 - +0.1
5,121,066 - -0.4

Or see this region's nucleotide sequence