Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3980 and Echvi_3981 are separated by 60 nucleotides Echvi_3981 and Echvi_3982 are separated by 224 nucleotides Echvi_3982 and Echvi_3983 are separated by 116 nucleotides Echvi_3983 and Echvi_3984 are separated by 6 nucleotides
Echvi_3980: Echvi_3980 - Beta-lactamase class A, at 4,768,501 to 4,769,412
_3980
Echvi_3981: Echvi_3981 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,769,473 to 4,770,084
_3981
Echvi_3982: Echvi_3982 - Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase., at 4,770,309 to 4,772,963
_3982
Echvi_3983: Echvi_3983 - Transcriptional regulator/sugar kinase, at 4,773,080 to 4,773,955
_3983
Echvi_3984: Echvi_3984 - alpha-1,2-mannosidase, putative, at 4,773,962 to 4,776,124
_3984
Position (kb)
4770
4771
4772
4773 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4769.320 kb on - strand, within Echvi_3980 at 4769.381 kb on - strand at 4769.381 kb on - strand at 4769.399 kb on + strand at 4769.456 kb on + strand at 4769.456 kb on + strand at 4769.479 kb on + strand at 4769.480 kb on - strand at 4769.502 kb on + strand at 4769.503 kb on - strand at 4769.562 kb on + strand, within Echvi_3981 at 4769.564 kb on + strand, within Echvi_3981 at 4769.565 kb on - strand, within Echvi_3981 at 4769.669 kb on - strand, within Echvi_3981 at 4769.679 kb on + strand, within Echvi_3981 at 4769.679 kb on + strand, within Echvi_3981 at 4769.680 kb on - strand, within Echvi_3981 at 4769.680 kb on - strand, within Echvi_3981 at 4769.717 kb on + strand, within Echvi_3981 at 4769.772 kb on - strand, within Echvi_3981 at 4769.788 kb on - strand, within Echvi_3981 at 4769.846 kb on + strand, within Echvi_3981 at 4769.893 kb on + strand, within Echvi_3981 at 4769.897 kb on + strand, within Echvi_3981 at 4769.897 kb on + strand, within Echvi_3981 at 4769.959 kb on + strand, within Echvi_3981 at 4769.966 kb on + strand, within Echvi_3981 at 4769.982 kb on - strand, within Echvi_3981 at 4769.990 kb on + strand, within Echvi_3981 at 4769.990 kb on + strand, within Echvi_3981 at 4769.991 kb on - strand, within Echvi_3981 at 4769.999 kb on + strand, within Echvi_3981 at 4769.999 kb on + strand, within Echvi_3981 at 4769.999 kb on + strand, within Echvi_3981 at 4770.000 kb on - strand, within Echvi_3981 at 4770.008 kb on - strand, within Echvi_3981 at 4770.072 kb on + strand at 4770.094 kb on + strand at 4770.095 kb on - strand at 4770.095 kb on - strand at 4770.194 kb on + strand at 4770.369 kb on + strand at 4770.370 kb on - strand at 4770.370 kb on - strand at 4770.370 kb on - strand at 4770.432 kb on - strand at 4770.444 kb on - strand at 4770.444 kb on - strand at 4770.455 kb on + strand at 4770.456 kb on - strand at 4770.461 kb on + strand at 4770.463 kb on + strand at 4770.463 kb on + strand at 4770.578 kb on + strand, within Echvi_3982 at 4770.578 kb on + strand, within Echvi_3982 at 4770.629 kb on + strand, within Echvi_3982 at 4770.629 kb on + strand, within Echvi_3982 at 4770.629 kb on + strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.630 kb on - strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.631 kb on + strand, within Echvi_3982 at 4770.632 kb on - strand, within Echvi_3982 at 4770.632 kb on - strand, within Echvi_3982 at 4770.633 kb on + strand, within Echvi_3982 at 4770.633 kb on + strand, within Echvi_3982 at 4770.728 kb on + strand, within Echvi_3982 at 4770.728 kb on + strand, within Echvi_3982 at 4770.728 kb on + strand, within Echvi_3982 at 4770.732 kb on + strand, within Echvi_3982 at 4770.733 kb on - strand, within Echvi_3982 at 4770.772 kb on - strand, within Echvi_3982 at 4770.776 kb on + strand, within Echvi_3982 at 4770.776 kb on + strand, within Echvi_3982 at 4770.776 kb on + strand, within Echvi_3982 at 4770.776 kb on + strand, within Echvi_3982 at 4770.776 kb on + strand, within Echvi_3982 at 4770.777 kb on - strand, within Echvi_3982 at 4770.778 kb on + strand, within Echvi_3982 at 4770.778 kb on + strand, within Echvi_3982 at 4770.800 kb on + strand, within Echvi_3982 at 4770.906 kb on + strand, within Echvi_3982 at 4770.907 kb on - strand, within Echvi_3982 at 4770.970 kb on + strand, within Echvi_3982 at 4771.040 kb on - strand, within Echvi_3982 at 4771.068 kb on + strand, within Echvi_3982 at 4771.069 kb on - strand, within Echvi_3982 at 4771.069 kb on - strand, within Echvi_3982 at 4771.069 kb on - strand, within Echvi_3982 at 4771.104 kb on - strand, within Echvi_3982 at 4771.108 kb on + strand, within Echvi_3982 at 4771.111 kb on + strand, within Echvi_3982 at 4771.111 kb on + strand, within Echvi_3982 at 4771.112 kb on - strand, within Echvi_3982 at 4771.237 kb on + strand, within Echvi_3982 at 4771.237 kb on + strand, within Echvi_3982 at 4771.238 kb on - strand, within Echvi_3982 at 4771.276 kb on + strand, within Echvi_3982 at 4771.291 kb on - strand, within Echvi_3982 at 4771.291 kb on - strand, within Echvi_3982 at 4771.304 kb on + strand, within Echvi_3982 at 4771.304 kb on + strand, within Echvi_3982 at 4771.304 kb on + strand, within Echvi_3982 at 4771.305 kb on - strand, within Echvi_3982 at 4771.445 kb on - strand, within Echvi_3982 at 4771.447 kb on - strand, within Echvi_3982 at 4771.515 kb on - strand, within Echvi_3982 at 4771.541 kb on - strand, within Echvi_3982 at 4771.572 kb on + strand, within Echvi_3982 at 4771.572 kb on + strand, within Echvi_3982 at 4771.572 kb on + strand, within Echvi_3982 at 4771.572 kb on + strand, within Echvi_3982 at 4771.573 kb on - strand, within Echvi_3982 at 4771.631 kb on - strand, within Echvi_3982 at 4771.631 kb on - strand, within Echvi_3982 at 4771.661 kb on + strand, within Echvi_3982 at 4771.662 kb on - strand, within Echvi_3982 at 4771.702 kb on + strand, within Echvi_3982 at 4771.750 kb on + strand, within Echvi_3982 at 4771.750 kb on + strand, within Echvi_3982 at 4771.952 kb on + strand, within Echvi_3982 at 4771.952 kb on + strand, within Echvi_3982 at 4771.952 kb on + strand, within Echvi_3982 at 4772.125 kb on + strand, within Echvi_3982 at 4772.125 kb on + strand, within Echvi_3982 at 4772.132 kb on + strand, within Echvi_3982 at 4772.151 kb on + strand, within Echvi_3982 at 4772.152 kb on - strand, within Echvi_3982 at 4772.210 kb on + strand, within Echvi_3982 at 4772.211 kb on - strand, within Echvi_3982 at 4772.280 kb on - strand, within Echvi_3982 at 4772.293 kb on + strand, within Echvi_3982 at 4772.294 kb on - strand, within Echvi_3982 at 4772.352 kb on + strand, within Echvi_3982 at 4772.353 kb on - strand, within Echvi_3982 at 4772.368 kb on + strand, within Echvi_3982 at 4772.368 kb on + strand, within Echvi_3982 at 4772.368 kb on + strand, within Echvi_3982 at 4772.368 kb on + strand, within Echvi_3982 at 4772.369 kb on - strand, within Echvi_3982 at 4772.430 kb on - strand, within Echvi_3982 at 4772.443 kb on - strand, within Echvi_3982 at 4772.449 kb on + strand, within Echvi_3982 at 4772.470 kb on + strand, within Echvi_3982 at 4772.471 kb on - strand, within Echvi_3982 at 4772.471 kb on - strand, within Echvi_3982 at 4772.535 kb on + strand, within Echvi_3982 at 4772.565 kb on + strand, within Echvi_3982 at 4772.688 kb on + strand, within Echvi_3982 at 4772.705 kb on - strand at 4772.705 kb on - strand at 4772.709 kb on + strand at 4772.710 kb on - strand at 4772.779 kb on - strand at 4772.779 kb on - strand at 4772.780 kb on + strand at 4772.868 kb on + strand at 4772.869 kb on - strand at 4772.876 kb on - strand at 4772.886 kb on - strand at 4772.913 kb on - strand at 4773.072 kb on - strand at 4773.075 kb on - strand at 4773.090 kb on + strand at 4773.091 kb on - strand at 4773.135 kb on - strand at 4773.136 kb on + strand at 4773.200 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.308 kb on + strand, within Echvi_3983 at 4773.309 kb on - strand, within Echvi_3983 at 4773.354 kb on - strand, within Echvi_3983 at 4773.388 kb on - strand, within Echvi_3983 at 4773.490 kb on - strand, within Echvi_3983 at 4773.572 kb on + strand, within Echvi_3983 at 4773.573 kb on - strand, within Echvi_3983 at 4773.573 kb on - strand, within Echvi_3983 at 4773.575 kb on + strand, within Echvi_3983 at 4773.576 kb on - strand, within Echvi_3983 at 4773.648 kb on - strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.714 kb on + strand, within Echvi_3983 at 4773.754 kb on + strand, within Echvi_3983 at 4773.755 kb on - strand, within Echvi_3983 at 4773.863 kb on - strand, within Echvi_3983 at 4773.917 kb on + strand at 4773.918 kb on - strand at 4773.933 kb on - strand at 4773.963 kb on + strand at 4773.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 4,769,320 - Echvi_3980 0.90 -0.1 4,769,381 - -0.0 4,769,381 - -0.0 4,769,399 + -0.2 4,769,456 + +0.7 4,769,456 + -1.1 4,769,479 + -0.6 4,769,480 - -0.5 4,769,502 + +0.0 4,769,503 - -1.6 4,769,562 + Echvi_3981 0.15 -0.0 4,769,564 + Echvi_3981 0.15 +0.0 4,769,565 - Echvi_3981 0.15 +1.3 4,769,669 - Echvi_3981 0.32 +0.2 4,769,679 + Echvi_3981 0.34 -0.7 4,769,679 + Echvi_3981 0.34 -1.0 4,769,680 - Echvi_3981 0.34 +0.9 4,769,680 - Echvi_3981 0.34 +0.1 4,769,717 + Echvi_3981 0.40 +0.3 4,769,772 - Echvi_3981 0.49 +0.8 4,769,788 - Echvi_3981 0.51 -0.0 4,769,846 + Echvi_3981 0.61 +0.5 4,769,893 + Echvi_3981 0.69 +0.2 4,769,897 + Echvi_3981 0.69 +0.1 4,769,897 + Echvi_3981 0.69 -2.1 4,769,959 + Echvi_3981 0.79 +1.2 4,769,966 + Echvi_3981 0.81 +1.3 4,769,982 - Echvi_3981 0.83 -0.9 4,769,990 + Echvi_3981 0.84 -0.3 4,769,990 + Echvi_3981 0.84 +0.1 4,769,991 - Echvi_3981 0.85 -0.1 4,769,999 + Echvi_3981 0.86 +0.7 4,769,999 + Echvi_3981 0.86 -0.9 4,769,999 + Echvi_3981 0.86 -0.0 4,770,000 - Echvi_3981 0.86 +0.6 4,770,008 - Echvi_3981 0.87 +1.3 4,770,072 + +0.5 4,770,094 + -0.7 4,770,095 - +0.3 4,770,095 - +0.6 4,770,194 + -1.6 4,770,369 + -0.2 4,770,370 - +0.4 4,770,370 - -0.1 4,770,370 - -1.5 4,770,432 - -0.4 4,770,444 - +0.1 4,770,444 - +0.2 4,770,455 + -1.4 4,770,456 - -1.1 4,770,461 + +0.5 4,770,463 + +1.5 4,770,463 + -0.4 4,770,578 + Echvi_3982 0.10 -0.4 4,770,578 + Echvi_3982 0.10 -0.4 4,770,629 + Echvi_3982 0.12 +0.2 4,770,629 + Echvi_3982 0.12 -1.6 4,770,629 + Echvi_3982 0.12 -1.2 4,770,630 - Echvi_3982 0.12 -0.5 4,770,630 - Echvi_3982 0.12 +0.9 4,770,630 - Echvi_3982 0.12 -0.3 4,770,630 - Echvi_3982 0.12 +0.2 4,770,630 - Echvi_3982 0.12 +0.7 4,770,630 - Echvi_3982 0.12 -1.0 4,770,631 + Echvi_3982 0.12 +0.2 4,770,631 + Echvi_3982 0.12 -0.5 4,770,631 + Echvi_3982 0.12 +0.9 4,770,631 + Echvi_3982 0.12 +1.0 4,770,631 + Echvi_3982 0.12 -0.2 4,770,631 + Echvi_3982 0.12 +1.1 4,770,631 + Echvi_3982 0.12 -1.0 4,770,632 - Echvi_3982 0.12 -1.5 4,770,632 - Echvi_3982 0.12 -0.3 4,770,633 + Echvi_3982 0.12 +1.1 4,770,633 + Echvi_3982 0.12 -1.2 4,770,728 + Echvi_3982 0.16 +0.3 4,770,728 + Echvi_3982 0.16 -0.6 4,770,728 + Echvi_3982 0.16 +0.6 4,770,732 + Echvi_3982 0.16 +0.3 4,770,733 - Echvi_3982 0.16 -1.1 4,770,772 - Echvi_3982 0.17 -0.7 4,770,776 + Echvi_3982 0.18 +0.1 4,770,776 + Echvi_3982 0.18 -0.3 4,770,776 + Echvi_3982 0.18 -0.5 4,770,776 + Echvi_3982 0.18 -0.2 4,770,776 + Echvi_3982 0.18 -0.0 4,770,777 - Echvi_3982 0.18 -1.4 4,770,778 + Echvi_3982 0.18 +0.6 4,770,778 + Echvi_3982 0.18 -1.0 4,770,800 + Echvi_3982 0.18 +0.5 4,770,906 + Echvi_3982 0.22 -1.5 4,770,907 - Echvi_3982 0.23 -0.1 4,770,970 + Echvi_3982 0.25 -0.2 4,771,040 - Echvi_3982 0.28 -0.0 4,771,068 + Echvi_3982 0.29 +1.4 4,771,069 - Echvi_3982 0.29 -1.9 4,771,069 - Echvi_3982 0.29 -2.5 4,771,069 - Echvi_3982 0.29 -1.3 4,771,104 - Echvi_3982 0.30 +0.3 4,771,108 + Echvi_3982 0.30 -1.8 4,771,111 + Echvi_3982 0.30 +0.4 4,771,111 + Echvi_3982 0.30 +1.0 4,771,112 - Echvi_3982 0.30 -1.1 4,771,237 + Echvi_3982 0.35 +0.1 4,771,237 + Echvi_3982 0.35 -0.1 4,771,238 - Echvi_3982 0.35 -0.8 4,771,276 + Echvi_3982 0.36 -0.3 4,771,291 - Echvi_3982 0.37 -1.4 4,771,291 - Echvi_3982 0.37 +0.0 4,771,304 + Echvi_3982 0.37 +0.2 4,771,304 + Echvi_3982 0.37 -1.8 4,771,304 + Echvi_3982 0.37 -1.0 4,771,305 - Echvi_3982 0.38 +0.2 4,771,445 - Echvi_3982 0.43 -0.2 4,771,447 - Echvi_3982 0.43 +0.7 4,771,515 - Echvi_3982 0.45 +0.2 4,771,541 - Echvi_3982 0.46 -0.3 4,771,572 + Echvi_3982 0.48 -0.1 4,771,572 + Echvi_3982 0.48 +0.0 4,771,572 + Echvi_3982 0.48 -0.5 4,771,572 + Echvi_3982 0.48 +0.5 4,771,573 - Echvi_3982 0.48 -0.4 4,771,631 - Echvi_3982 0.50 -1.1 4,771,631 - Echvi_3982 0.50 +0.2 4,771,661 + Echvi_3982 0.51 +1.3 4,771,662 - Echvi_3982 0.51 -0.5 4,771,702 + Echvi_3982 0.52 -0.1 4,771,750 + Echvi_3982 0.54 +0.2 4,771,750 + Echvi_3982 0.54 +3.6 4,771,952 + Echvi_3982 0.62 -0.8 4,771,952 + Echvi_3982 0.62 -0.5 4,771,952 + Echvi_3982 0.62 +1.2 4,772,125 + Echvi_3982 0.68 +0.1 4,772,125 + Echvi_3982 0.68 +0.2 4,772,132 + Echvi_3982 0.69 -0.7 4,772,151 + Echvi_3982 0.69 -0.0 4,772,152 - Echvi_3982 0.69 -1.5 4,772,210 + Echvi_3982 0.72 -1.3 4,772,211 - Echvi_3982 0.72 -1.2 4,772,280 - Echvi_3982 0.74 -0.0 4,772,293 + Echvi_3982 0.75 -0.8 4,772,294 - Echvi_3982 0.75 -0.6 4,772,352 + Echvi_3982 0.77 -0.0 4,772,353 - Echvi_3982 0.77 +0.4 4,772,368 + Echvi_3982 0.78 +1.1 4,772,368 + Echvi_3982 0.78 +0.3 4,772,368 + Echvi_3982 0.78 -1.1 4,772,368 + Echvi_3982 0.78 -0.3 4,772,369 - Echvi_3982 0.78 +0.2 4,772,430 - Echvi_3982 0.80 -1.2 4,772,443 - Echvi_3982 0.80 -2.3 4,772,449 + Echvi_3982 0.81 +0.3 4,772,470 + Echvi_3982 0.81 -1.0 4,772,471 - Echvi_3982 0.81 +3.6 4,772,471 - Echvi_3982 0.81 -0.9 4,772,535 + Echvi_3982 0.84 +0.1 4,772,565 + Echvi_3982 0.85 +0.2 4,772,688 + Echvi_3982 0.90 +0.1 4,772,705 - +1.0 4,772,705 - -0.3 4,772,709 + +0.4 4,772,710 - +0.4 4,772,779 - +1.2 4,772,779 - +1.0 4,772,780 + -1.0 4,772,868 + +1.4 4,772,869 - -0.3 4,772,876 - -0.3 4,772,886 - -1.1 4,772,913 - +1.2 4,773,072 - +0.6 4,773,075 - -0.8 4,773,090 + -0.5 4,773,091 - -0.3 4,773,135 - -0.5 4,773,136 + -0.6 4,773,200 + Echvi_3983 0.14 +1.2 4,773,220 + Echvi_3983 0.16 +1.4 4,773,220 + Echvi_3983 0.16 -0.9 4,773,220 + Echvi_3983 0.16 +0.6 4,773,308 + Echvi_3983 0.26 +0.8 4,773,309 - Echvi_3983 0.26 -0.2 4,773,354 - Echvi_3983 0.31 +0.8 4,773,388 - Echvi_3983 0.35 +0.3 4,773,490 - Echvi_3983 0.47 +0.5 4,773,572 + Echvi_3983 0.56 +1.0 4,773,573 - Echvi_3983 0.56 +0.9 4,773,573 - Echvi_3983 0.56 +0.8 4,773,575 + Echvi_3983 0.57 +0.0 4,773,576 - Echvi_3983 0.57 -0.1 4,773,648 - Echvi_3983 0.65 -0.0 4,773,672 + Echvi_3983 0.68 +1.6 4,773,672 + Echvi_3983 0.68 -0.7 4,773,672 + Echvi_3983 0.68 +0.3 4,773,714 + Echvi_3983 0.72 -0.3 4,773,754 + Echvi_3983 0.77 -0.3 4,773,755 - Echvi_3983 0.77 -0.4 4,773,863 - Echvi_3983 0.89 +0.3 4,773,917 + -0.5 4,773,918 - -0.1 4,773,933 - +0.1 4,773,963 + +1.9 4,773,963 + +0.1
Or see this region's nucleotide sequence