Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3617

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3616 and Echvi_3617 are separated by 90 nucleotidesEchvi_3617 and Echvi_3618 are separated by 37 nucleotides Echvi_3616: Echvi_3616 - Predicted N6-adenine-specific DNA methylase, at 4,291,407 to 4,292,564 _3616 Echvi_3617: Echvi_3617 - Domain of Unknown Function (DUF1080)., at 4,292,655 to 4,293,434 _3617 Echvi_3618: Echvi_3618 - hypothetical protein, at 4,293,472 to 4,295,046 _3618 Position (kb) 4292 4293 4294Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4291.750 kb on + strand, within Echvi_3616at 4291.750 kb on + strand, within Echvi_3616at 4291.751 kb on - strand, within Echvi_3616at 4291.751 kb on - strand, within Echvi_3616at 4291.751 kb on - strand, within Echvi_3616at 4291.752 kb on + strand, within Echvi_3616at 4291.753 kb on - strand, within Echvi_3616at 4291.753 kb on - strand, within Echvi_3616at 4291.789 kb on - strand, within Echvi_3616at 4291.796 kb on + strand, within Echvi_3616at 4291.796 kb on + strand, within Echvi_3616at 4291.796 kb on + strand, within Echvi_3616at 4291.799 kb on + strand, within Echvi_3616at 4291.799 kb on + strand, within Echvi_3616at 4291.818 kb on + strand, within Echvi_3616at 4291.871 kb on + strand, within Echvi_3616at 4291.879 kb on + strand, within Echvi_3616at 4291.880 kb on - strand, within Echvi_3616at 4292.087 kb on + strand, within Echvi_3616at 4292.088 kb on - strand, within Echvi_3616at 4292.088 kb on - strand, within Echvi_3616at 4292.088 kb on - strand, within Echvi_3616at 4292.088 kb on - strand, within Echvi_3616at 4292.088 kb on - strand, within Echvi_3616at 4292.159 kb on + strand, within Echvi_3616at 4292.256 kb on + strand, within Echvi_3616at 4292.257 kb on - strand, within Echvi_3616at 4292.257 kb on - strand, within Echvi_3616at 4292.278 kb on + strand, within Echvi_3616at 4292.296 kb on + strand, within Echvi_3616at 4292.296 kb on + strand, within Echvi_3616at 4292.296 kb on + strand, within Echvi_3616at 4292.297 kb on - strand, within Echvi_3616at 4292.297 kb on - strand, within Echvi_3616at 4292.297 kb on - strand, within Echvi_3616at 4292.329 kb on + strand, within Echvi_3616at 4292.329 kb on + strand, within Echvi_3616at 4292.329 kb on + strand, within Echvi_3616at 4292.330 kb on - strand, within Echvi_3616at 4292.402 kb on + strand, within Echvi_3616at 4292.402 kb on + strand, within Echvi_3616at 4292.410 kb on + strand, within Echvi_3616at 4292.411 kb on - strand, within Echvi_3616at 4292.411 kb on - strand, within Echvi_3616at 4292.411 kb on - strand, within Echvi_3616at 4292.411 kb on - strand, within Echvi_3616at 4292.412 kb on + strand, within Echvi_3616at 4292.412 kb on + strand, within Echvi_3616at 4292.412 kb on + strand, within Echvi_3616at 4292.412 kb on + strand, within Echvi_3616at 4292.412 kb on + strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.413 kb on - strand, within Echvi_3616at 4292.436 kb on + strand, within Echvi_3616at 4292.444 kb on + strand, within Echvi_3616at 4292.445 kb on - strand, within Echvi_3616at 4292.472 kb on - strandat 4292.503 kb on + strandat 4292.503 kb on + strandat 4292.504 kb on - strandat 4292.504 kb on - strandat 4292.536 kb on - strandat 4292.604 kb on - strandat 4292.604 kb on - strandat 4292.630 kb on + strandat 4292.656 kb on + strandat 4292.657 kb on - strandat 4292.762 kb on + strand, within Echvi_3617at 4292.762 kb on + strand, within Echvi_3617at 4292.850 kb on + strand, within Echvi_3617at 4292.851 kb on - strand, within Echvi_3617at 4292.931 kb on - strand, within Echvi_3617at 4292.931 kb on - strand, within Echvi_3617at 4292.931 kb on - strand, within Echvi_3617at 4292.931 kb on - strand, within Echvi_3617at 4292.962 kb on + strand, within Echvi_3617at 4292.962 kb on + strand, within Echvi_3617at 4292.963 kb on - strand, within Echvi_3617at 4292.993 kb on + strand, within Echvi_3617at 4293.061 kb on + strand, within Echvi_3617at 4293.061 kb on + strand, within Echvi_3617at 4293.062 kb on - strand, within Echvi_3617at 4293.062 kb on - strand, within Echvi_3617at 4293.062 kb on - strand, within Echvi_3617at 4293.062 kb on - strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.063 kb on + strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.064 kb on - strand, within Echvi_3617at 4293.192 kb on - strand, within Echvi_3617at 4293.291 kb on + strand, within Echvi_3617at 4293.292 kb on - strand, within Echvi_3617at 4293.316 kb on - strand, within Echvi_3617at 4293.393 kb on + strandat 4293.396 kb on - strandat 4293.396 kb on - strandat 4293.396 kb on - strandat 4293.448 kb on + strandat 4293.455 kb on + strandat 4293.458 kb on + strandat 4293.469 kb on + strandat 4293.470 kb on - strandat 4293.470 kb on - strandat 4293.470 kb on - strandat 4293.475 kb on + strandat 4293.475 kb on + strandat 4293.601 kb on - strandat 4293.632 kb on - strand, within Echvi_3618at 4293.632 kb on - strand, within Echvi_3618at 4293.632 kb on - strand, within Echvi_3618at 4293.648 kb on + strand, within Echvi_3618at 4293.649 kb on - strand, within Echvi_3618at 4293.683 kb on - strand, within Echvi_3618at 4293.696 kb on + strand, within Echvi_3618at 4293.696 kb on + strand, within Echvi_3618at 4293.696 kb on + strand, within Echvi_3618at 4293.696 kb on + strand, within Echvi_3618at 4293.696 kb on + strand, within Echvi_3618at 4293.714 kb on - strand, within Echvi_3618at 4293.741 kb on + strand, within Echvi_3618at 4293.741 kb on + strand, within Echvi_3618at 4293.741 kb on + strand, within Echvi_3618at 4293.742 kb on - strand, within Echvi_3618at 4293.752 kb on + strand, within Echvi_3618at 4293.753 kb on - strand, within Echvi_3618at 4293.753 kb on - strand, within Echvi_3618at 4293.753 kb on - strand, within Echvi_3618at 4293.753 kb on - strand, within Echvi_3618at 4293.753 kb on - strand, within Echvi_3618at 4293.760 kb on + strand, within Echvi_3618at 4293.797 kb on + strand, within Echvi_3618at 4293.848 kb on + strand, within Echvi_3618at 4293.848 kb on + strand, within Echvi_3618at 4293.849 kb on - strand, within Echvi_3618at 4293.850 kb on + strandat 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.850 kb on + strand, within Echvi_3618at 4293.851 kb on - strand, within Echvi_3618at 4293.908 kb on + strand, within Echvi_3618at 4293.914 kb on + strand, within Echvi_3618at 4293.925 kb on + strand, within Echvi_3618at 4294.004 kb on - strand, within Echvi_3618at 4294.088 kb on + strand, within Echvi_3618at 4294.108 kb on + strand, within Echvi_3618at 4294.226 kb on + strand, within Echvi_3618at 4294.226 kb on + strand, within Echvi_3618at 4294.246 kb on + strand, within Echvi_3618at 4294.247 kb on - strand, within Echvi_3618at 4294.249 kb on + strand, within Echvi_3618at 4294.249 kb on + strand, within Echvi_3618at 4294.282 kb on + strand, within Echvi_3618at 4294.283 kb on - strand, within Echvi_3618at 4294.283 kb on - strand, within Echvi_3618at 4294.285 kb on + strand, within Echvi_3618at 4294.285 kb on + strand, within Echvi_3618at 4294.286 kb on - strand, within Echvi_3618at 4294.322 kb on - strand, within Echvi_3618at 4294.326 kb on + strand, within Echvi_3618at 4294.326 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.429 kb on + strand, within Echvi_3618at 4294.430 kb on - strand, within Echvi_3618at 4294.432 kb on - strand, within Echvi_3618at 4294.433 kb on + strand, within Echvi_3618

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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4,291,750 + Echvi_3616 0.30 +0.0
4,291,750 + Echvi_3616 0.30 -0.6
4,291,751 - Echvi_3616 0.30 -0.5
4,291,751 - Echvi_3616 0.30 -1.8
4,291,751 - Echvi_3616 0.30 -0.6
4,291,752 + Echvi_3616 0.30 -0.3
4,291,753 - Echvi_3616 0.30 +1.4
4,291,753 - Echvi_3616 0.30 +0.8
4,291,789 - Echvi_3616 0.33 -0.7
4,291,796 + Echvi_3616 0.34 -1.9
4,291,796 + Echvi_3616 0.34 -1.0
4,291,796 + Echvi_3616 0.34 -0.2
4,291,799 + Echvi_3616 0.34 -1.1
4,291,799 + Echvi_3616 0.34 +0.6
4,291,818 + Echvi_3616 0.35 -2.4
4,291,871 + Echvi_3616 0.40 +0.1
4,291,879 + Echvi_3616 0.41 +0.3
4,291,880 - Echvi_3616 0.41 +0.8
4,292,087 + Echvi_3616 0.59 +0.8
4,292,088 - Echvi_3616 0.59 -0.1
4,292,088 - Echvi_3616 0.59 -0.8
4,292,088 - Echvi_3616 0.59 +0.8
4,292,088 - Echvi_3616 0.59 +0.3
4,292,088 - Echvi_3616 0.59 +0.2
4,292,159 + Echvi_3616 0.65 +0.7
4,292,256 + Echvi_3616 0.73 +0.1
4,292,257 - Echvi_3616 0.73 +0.4
4,292,257 - Echvi_3616 0.73 -1.1
4,292,278 + Echvi_3616 0.75 -0.1
4,292,296 + Echvi_3616 0.77 -0.7
4,292,296 + Echvi_3616 0.77 -1.1
4,292,296 + Echvi_3616 0.77 -0.6
4,292,297 - Echvi_3616 0.77 -0.4
4,292,297 - Echvi_3616 0.77 +0.1
4,292,297 - Echvi_3616 0.77 -1.2
4,292,329 + Echvi_3616 0.80 -1.7
4,292,329 + Echvi_3616 0.80 +0.6
4,292,329 + Echvi_3616 0.80 +0.2
4,292,330 - Echvi_3616 0.80 +0.0
4,292,402 + Echvi_3616 0.86 -0.2
4,292,402 + Echvi_3616 0.86 -0.5
4,292,410 + Echvi_3616 0.87 -0.7
4,292,411 - Echvi_3616 0.87 +1.1
4,292,411 - Echvi_3616 0.87 +1.3
4,292,411 - Echvi_3616 0.87 +0.7
4,292,411 - Echvi_3616 0.87 -0.4
4,292,412 + Echvi_3616 0.87 +0.4
4,292,412 + Echvi_3616 0.87 -0.6
4,292,412 + Echvi_3616 0.87 -0.4
4,292,412 + Echvi_3616 0.87 +0.0
4,292,412 + Echvi_3616 0.87 +0.7
4,292,413 - Echvi_3616 0.87 -0.2
4,292,413 - Echvi_3616 0.87 -0.1
4,292,413 - Echvi_3616 0.87 -0.3
4,292,413 - Echvi_3616 0.87 -0.1
4,292,413 - Echvi_3616 0.87 +0.0
4,292,413 - Echvi_3616 0.87 +0.4
4,292,413 - Echvi_3616 0.87 +0.8
4,292,413 - Echvi_3616 0.87 +2.7
4,292,413 - Echvi_3616 0.87 -0.1
4,292,413 - Echvi_3616 0.87 +1.1
4,292,436 + Echvi_3616 0.89 +0.1
4,292,444 + Echvi_3616 0.90 +0.4
4,292,445 - Echvi_3616 0.90 -1.2
4,292,472 - -1.0
4,292,503 + +1.3
4,292,503 + +0.6
4,292,504 - +1.1
4,292,504 - -0.4
4,292,536 - -0.1
4,292,604 - -0.4
4,292,604 - +0.3
4,292,630 + +0.1
4,292,656 + +0.3
4,292,657 - +0.6
4,292,762 + Echvi_3617 0.14 -0.2
4,292,762 + Echvi_3617 0.14 +0.4
4,292,850 + Echvi_3617 0.25 -1.0
4,292,851 - Echvi_3617 0.25 +0.1
4,292,931 - Echvi_3617 0.35 -0.5
4,292,931 - Echvi_3617 0.35 -0.4
4,292,931 - Echvi_3617 0.35 -0.4
4,292,931 - Echvi_3617 0.35 -0.1
4,292,962 + Echvi_3617 0.39 +1.5
4,292,962 + Echvi_3617 0.39 -0.6
4,292,963 - Echvi_3617 0.39 -0.5
4,292,993 + Echvi_3617 0.43 +0.0
4,293,061 + Echvi_3617 0.52 -0.8
4,293,061 + Echvi_3617 0.52 -0.6
4,293,062 - Echvi_3617 0.52 +0.0
4,293,062 - Echvi_3617 0.52 +0.3
4,293,062 - Echvi_3617 0.52 -0.4
4,293,062 - Echvi_3617 0.52 -0.9
4,293,063 + Echvi_3617 0.52 -0.7
4,293,063 + Echvi_3617 0.52 -1.4
4,293,063 + Echvi_3617 0.52 -0.1
4,293,063 + Echvi_3617 0.52 -1.2
4,293,063 + Echvi_3617 0.52 -2.6
4,293,063 + Echvi_3617 0.52 +0.1
4,293,064 - Echvi_3617 0.52 -0.1
4,293,064 - Echvi_3617 0.52 +0.3
4,293,064 - Echvi_3617 0.52 +1.1
4,293,064 - Echvi_3617 0.52 -0.8
4,293,064 - Echvi_3617 0.52 -0.4
4,293,064 - Echvi_3617 0.52 -0.0
4,293,192 - Echvi_3617 0.69 -0.9
4,293,291 + Echvi_3617 0.82 -0.7
4,293,292 - Echvi_3617 0.82 +0.5
4,293,316 - Echvi_3617 0.85 -1.7
4,293,393 + -0.7
4,293,396 - +0.1
4,293,396 - +0.8
4,293,396 - -2.1
4,293,448 + -0.1
4,293,455 + -1.1
4,293,458 + -0.5
4,293,469 + +0.2
4,293,470 - -0.3
4,293,470 - +0.9
4,293,470 - -0.2
4,293,475 + +0.4
4,293,475 + +0.3
4,293,601 - -0.3
4,293,632 - Echvi_3618 0.10 +0.1
4,293,632 - Echvi_3618 0.10 +0.4
4,293,632 - Echvi_3618 0.10 +0.1
4,293,648 + Echvi_3618 0.11 +0.7
4,293,649 - Echvi_3618 0.11 +0.8
4,293,683 - Echvi_3618 0.13 +0.9
4,293,696 + Echvi_3618 0.14 +0.3
4,293,696 + Echvi_3618 0.14 +0.7
4,293,696 + Echvi_3618 0.14 +0.3
4,293,696 + Echvi_3618 0.14 +1.2
4,293,696 + Echvi_3618 0.14 -1.1
4,293,714 - Echvi_3618 0.15 +0.6
4,293,741 + Echvi_3618 0.17 +0.6
4,293,741 + Echvi_3618 0.17 -0.7
4,293,741 + Echvi_3618 0.17 +1.2
4,293,742 - Echvi_3618 0.17 -1.5
4,293,752 + Echvi_3618 0.18 -1.2
4,293,753 - Echvi_3618 0.18 +0.6
4,293,753 - Echvi_3618 0.18 -0.1
4,293,753 - Echvi_3618 0.18 +0.1
4,293,753 - Echvi_3618 0.18 -2.0
4,293,753 - Echvi_3618 0.18 +0.1
4,293,760 + Echvi_3618 0.18 +0.8
4,293,797 + Echvi_3618 0.21 -1.7
4,293,848 + Echvi_3618 0.24 -0.3
4,293,848 + Echvi_3618 0.24 -0.7
4,293,849 - Echvi_3618 0.24 -0.5
4,293,850 + +3.2
4,293,850 + Echvi_3618 0.24 +0.2
4,293,850 + Echvi_3618 0.24 +1.6
4,293,850 + Echvi_3618 0.24 -1.1
4,293,850 + Echvi_3618 0.24 -1.3
4,293,850 + Echvi_3618 0.24 -0.9
4,293,850 + Echvi_3618 0.24 -1.0
4,293,850 + Echvi_3618 0.24 +0.1
4,293,851 - Echvi_3618 0.24 -0.5
4,293,908 + Echvi_3618 0.28 -1.0
4,293,914 + Echvi_3618 0.28 -0.5
4,293,925 + Echvi_3618 0.29 -1.1
4,294,004 - Echvi_3618 0.34 -0.1
4,294,088 + Echvi_3618 0.39 -0.5
4,294,108 + Echvi_3618 0.40 +0.2
4,294,226 + Echvi_3618 0.48 -1.7
4,294,226 + Echvi_3618 0.48 +0.0
4,294,246 + Echvi_3618 0.49 +0.1
4,294,247 - Echvi_3618 0.49 -0.2
4,294,249 + Echvi_3618 0.49 +0.0
4,294,249 + Echvi_3618 0.49 +0.4
4,294,282 + Echvi_3618 0.51 -1.2
4,294,283 - Echvi_3618 0.51 +0.9
4,294,283 - Echvi_3618 0.51 +1.8
4,294,285 + Echvi_3618 0.52 +0.3
4,294,285 + Echvi_3618 0.52 +0.2
4,294,286 - Echvi_3618 0.52 +0.4
4,294,322 - Echvi_3618 0.54 +0.5
4,294,326 + Echvi_3618 0.54 -0.2
4,294,326 + Echvi_3618 0.54 +0.4
4,294,429 + Echvi_3618 0.61 +0.0
4,294,429 + Echvi_3618 0.61 -0.2
4,294,429 + Echvi_3618 0.61 -0.1
4,294,429 + Echvi_3618 0.61 -0.4
4,294,430 - Echvi_3618 0.61 -0.2
4,294,432 - Echvi_3618 0.61 -0.2
4,294,433 + Echvi_3618 0.61 +1.6

Or see this region's nucleotide sequence