Experiment: m.b. Chloride 750 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3270 and Echvi_3271 are separated by 246 nucleotides Echvi_3271 and Echvi_3272 are separated by 144 nucleotides
Echvi_3270: Echvi_3270 - Site-specific recombinase XerD, at 3,874,929 to 3,876,038
_3270
Echvi_3271: Echvi_3271 - 3-oxoacid CoA-transferase, B subunit, at 3,876,285 to 3,876,941
_3271
Echvi_3272: Echvi_3272 - 3-oxoacid CoA-transferase, A subunit, at 3,877,086 to 3,877,778
_3272
Position (kb)
3876
3877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3875.298 kb on + strand, within Echvi_3270 at 3875.299 kb on - strand, within Echvi_3270 at 3875.307 kb on + strand, within Echvi_3270 at 3875.326 kb on - strand, within Echvi_3270 at 3875.378 kb on - strand, within Echvi_3270 at 3875.378 kb on - strand, within Echvi_3270 at 3875.378 kb on - strand, within Echvi_3270 at 3875.379 kb on + strand, within Echvi_3270 at 3875.379 kb on + strand, within Echvi_3270 at 3875.380 kb on - strand, within Echvi_3270 at 3875.380 kb on - strand, within Echvi_3270 at 3875.380 kb on - strand, within Echvi_3270 at 3875.380 kb on - strand, within Echvi_3270 at 3875.381 kb on + strand, within Echvi_3270 at 3875.381 kb on + strand, within Echvi_3270 at 3875.382 kb on - strand at 3875.382 kb on - strand, within Echvi_3270 at 3875.436 kb on - strand, within Echvi_3270 at 3875.454 kb on + strand, within Echvi_3270 at 3875.454 kb on + strand, within Echvi_3270 at 3875.454 kb on + strand, within Echvi_3270 at 3875.455 kb on - strand, within Echvi_3270 at 3875.455 kb on - strand, within Echvi_3270 at 3875.522 kb on + strand, within Echvi_3270 at 3875.553 kb on + strand, within Echvi_3270 at 3875.566 kb on + strand, within Echvi_3270 at 3875.567 kb on - strand, within Echvi_3270 at 3875.567 kb on - strand, within Echvi_3270 at 3875.567 kb on - strand, within Echvi_3270 at 3875.571 kb on + strand, within Echvi_3270 at 3875.579 kb on - strand, within Echvi_3270 at 3875.617 kb on - strand, within Echvi_3270 at 3875.690 kb on - strand, within Echvi_3270 at 3875.817 kb on - strand, within Echvi_3270 at 3875.876 kb on + strand, within Echvi_3270 at 3875.888 kb on - strand, within Echvi_3270 at 3875.888 kb on - strand, within Echvi_3270 at 3876.115 kb on + strand at 3876.184 kb on - strand at 3876.184 kb on - strand at 3876.190 kb on - strand at 3876.192 kb on + strand at 3876.192 kb on + strand at 3876.193 kb on - strand at 3876.193 kb on - strand at 3876.207 kb on + strand at 3876.214 kb on + strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.215 kb on - strand at 3876.217 kb on + strand at 3876.217 kb on + strand at 3876.218 kb on - strand at 3876.265 kb on + strand at 3876.265 kb on + strand at 3876.266 kb on - strand at 3876.266 kb on - strand at 3876.277 kb on + strand at 3876.278 kb on - strand at 3876.354 kb on + strand, within Echvi_3271 at 3876.416 kb on - strand, within Echvi_3271 at 3876.819 kb on + strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.820 kb on - strand, within Echvi_3271 at 3876.841 kb on + strand, within Echvi_3271 at 3876.841 kb on + strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.842 kb on - strand, within Echvi_3271 at 3876.867 kb on + strand, within Echvi_3271 at 3876.970 kb on - strand at 3876.978 kb on + strand at 3876.983 kb on + strand at 3876.983 kb on + strand at 3876.997 kb on - strand at 3877.147 kb on - strand at 3877.223 kb on + strand, within Echvi_3272 at 3877.223 kb on + strand, within Echvi_3272 at 3877.276 kb on + strand, within Echvi_3272 at 3877.276 kb on + strand at 3877.354 kb on + strand, within Echvi_3272 at 3877.547 kb on - strand, within Echvi_3272 at 3877.713 kb on + strand at 3877.770 kb on - strand at 3877.779 kb on - strand at 3877.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM remove 3,875,298 + Echvi_3270 0.33 -0.0 3,875,299 - Echvi_3270 0.33 +0.5 3,875,307 + Echvi_3270 0.34 -1.4 3,875,326 - Echvi_3270 0.36 -1.2 3,875,378 - Echvi_3270 0.40 -0.1 3,875,378 - Echvi_3270 0.40 +0.8 3,875,378 - Echvi_3270 0.40 -0.5 3,875,379 + Echvi_3270 0.41 -0.3 3,875,379 + Echvi_3270 0.41 +0.5 3,875,380 - Echvi_3270 0.41 -2.7 3,875,380 - Echvi_3270 0.41 +0.1 3,875,380 - Echvi_3270 0.41 +0.8 3,875,380 - Echvi_3270 0.41 -2.1 3,875,381 + Echvi_3270 0.41 -1.2 3,875,381 + Echvi_3270 0.41 -0.0 3,875,382 - +1.3 3,875,382 - Echvi_3270 0.41 -0.6 3,875,436 - Echvi_3270 0.46 +0.5 3,875,454 + Echvi_3270 0.47 +0.4 3,875,454 + Echvi_3270 0.47 -0.1 3,875,454 + Echvi_3270 0.47 -0.3 3,875,455 - Echvi_3270 0.47 -0.1 3,875,455 - Echvi_3270 0.47 -1.0 3,875,522 + Echvi_3270 0.53 -0.1 3,875,553 + Echvi_3270 0.56 +0.1 3,875,566 + Echvi_3270 0.57 -0.1 3,875,567 - Echvi_3270 0.57 -1.6 3,875,567 - Echvi_3270 0.57 +0.2 3,875,567 - Echvi_3270 0.57 +0.3 3,875,571 + Echvi_3270 0.58 +0.3 3,875,579 - Echvi_3270 0.59 -1.6 3,875,617 - Echvi_3270 0.62 +0.1 3,875,690 - Echvi_3270 0.69 -0.7 3,875,817 - Echvi_3270 0.80 -1.7 3,875,876 + Echvi_3270 0.85 +0.7 3,875,888 - Echvi_3270 0.86 +2.1 3,875,888 - Echvi_3270 0.86 -0.6 3,876,115 + -1.5 3,876,184 - -1.1 3,876,184 - +0.3 3,876,190 - +0.8 3,876,192 + +0.0 3,876,192 + -0.2 3,876,193 - +1.6 3,876,193 - -0.2 3,876,207 + -0.1 3,876,214 + -0.4 3,876,215 - -1.3 3,876,215 - -0.7 3,876,215 - +0.1 3,876,215 - -2.4 3,876,215 - +0.1 3,876,217 + +0.3 3,876,217 + +0.8 3,876,218 - +0.4 3,876,265 + +1.1 3,876,265 + -0.3 3,876,266 - -0.1 3,876,266 - -0.1 3,876,277 + +0.0 3,876,278 - -0.3 3,876,354 + Echvi_3271 0.11 -0.5 3,876,416 - Echvi_3271 0.20 -0.4 3,876,819 + Echvi_3271 0.81 -1.1 3,876,820 - Echvi_3271 0.81 -1.6 3,876,820 - Echvi_3271 0.81 -0.5 3,876,820 - Echvi_3271 0.81 +0.7 3,876,841 + Echvi_3271 0.85 -1.3 3,876,841 + Echvi_3271 0.85 +1.5 3,876,842 - Echvi_3271 0.85 -1.0 3,876,842 - Echvi_3271 0.85 -0.8 3,876,842 - Echvi_3271 0.85 -0.5 3,876,867 + Echvi_3271 0.89 -1.3 3,876,970 - -0.4 3,876,978 + +0.3 3,876,983 + -0.3 3,876,983 + -2.2 3,876,997 - -0.2 3,877,147 - -0.7 3,877,223 + Echvi_3272 0.20 -0.4 3,877,223 + Echvi_3272 0.20 -0.3 3,877,276 + Echvi_3272 0.27 +0.4 3,877,276 + +1.3 3,877,354 + Echvi_3272 0.39 -0.5 3,877,547 - Echvi_3272 0.67 -0.0 3,877,713 + +0.4 3,877,770 - -0.6 3,877,779 - +1.7 3,877,792 - -1.0
Or see this region's nucleotide sequence