Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3271

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3270 and Echvi_3271 are separated by 246 nucleotidesEchvi_3271 and Echvi_3272 are separated by 144 nucleotides Echvi_3270: Echvi_3270 - Site-specific recombinase XerD, at 3,874,929 to 3,876,038 _3270 Echvi_3271: Echvi_3271 - 3-oxoacid CoA-transferase, B subunit, at 3,876,285 to 3,876,941 _3271 Echvi_3272: Echvi_3272 - 3-oxoacid CoA-transferase, A subunit, at 3,877,086 to 3,877,778 _3272 Position (kb) 3876 3877Strain fitness (log2 ratio) -2 -1 0 1 2at 3875.298 kb on + strand, within Echvi_3270at 3875.299 kb on - strand, within Echvi_3270at 3875.307 kb on + strand, within Echvi_3270at 3875.326 kb on - strand, within Echvi_3270at 3875.378 kb on - strand, within Echvi_3270at 3875.378 kb on - strand, within Echvi_3270at 3875.378 kb on - strand, within Echvi_3270at 3875.379 kb on + strand, within Echvi_3270at 3875.379 kb on + strand, within Echvi_3270at 3875.380 kb on - strand, within Echvi_3270at 3875.380 kb on - strand, within Echvi_3270at 3875.380 kb on - strand, within Echvi_3270at 3875.380 kb on - strand, within Echvi_3270at 3875.381 kb on + strand, within Echvi_3270at 3875.381 kb on + strand, within Echvi_3270at 3875.382 kb on - strandat 3875.382 kb on - strand, within Echvi_3270at 3875.436 kb on - strand, within Echvi_3270at 3875.454 kb on + strand, within Echvi_3270at 3875.454 kb on + strand, within Echvi_3270at 3875.454 kb on + strand, within Echvi_3270at 3875.455 kb on - strand, within Echvi_3270at 3875.455 kb on - strand, within Echvi_3270at 3875.522 kb on + strand, within Echvi_3270at 3875.553 kb on + strand, within Echvi_3270at 3875.566 kb on + strand, within Echvi_3270at 3875.567 kb on - strand, within Echvi_3270at 3875.567 kb on - strand, within Echvi_3270at 3875.567 kb on - strand, within Echvi_3270at 3875.571 kb on + strand, within Echvi_3270at 3875.579 kb on - strand, within Echvi_3270at 3875.617 kb on - strand, within Echvi_3270at 3875.690 kb on - strand, within Echvi_3270at 3875.817 kb on - strand, within Echvi_3270at 3875.876 kb on + strand, within Echvi_3270at 3875.888 kb on - strand, within Echvi_3270at 3875.888 kb on - strand, within Echvi_3270at 3876.115 kb on + strandat 3876.184 kb on - strandat 3876.184 kb on - strandat 3876.190 kb on - strandat 3876.192 kb on + strandat 3876.192 kb on + strandat 3876.193 kb on - strandat 3876.193 kb on - strandat 3876.207 kb on + strandat 3876.214 kb on + strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.215 kb on - strandat 3876.217 kb on + strandat 3876.217 kb on + strandat 3876.218 kb on - strandat 3876.265 kb on + strandat 3876.265 kb on + strandat 3876.266 kb on - strandat 3876.266 kb on - strandat 3876.277 kb on + strandat 3876.278 kb on - strandat 3876.354 kb on + strand, within Echvi_3271at 3876.416 kb on - strand, within Echvi_3271at 3876.819 kb on + strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.820 kb on - strand, within Echvi_3271at 3876.841 kb on + strand, within Echvi_3271at 3876.841 kb on + strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.842 kb on - strand, within Echvi_3271at 3876.867 kb on + strand, within Echvi_3271at 3876.970 kb on - strandat 3876.978 kb on + strandat 3876.983 kb on + strandat 3876.983 kb on + strandat 3876.997 kb on - strandat 3877.147 kb on - strandat 3877.223 kb on + strand, within Echvi_3272at 3877.223 kb on + strand, within Echvi_3272at 3877.276 kb on + strand, within Echvi_3272at 3877.276 kb on + strandat 3877.354 kb on + strand, within Echvi_3272at 3877.547 kb on - strand, within Echvi_3272at 3877.713 kb on + strandat 3877.770 kb on - strandat 3877.779 kb on - strandat 3877.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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3,875,298 + Echvi_3270 0.33 -0.0
3,875,299 - Echvi_3270 0.33 +0.5
3,875,307 + Echvi_3270 0.34 -1.4
3,875,326 - Echvi_3270 0.36 -1.2
3,875,378 - Echvi_3270 0.40 -0.1
3,875,378 - Echvi_3270 0.40 +0.8
3,875,378 - Echvi_3270 0.40 -0.5
3,875,379 + Echvi_3270 0.41 -0.3
3,875,379 + Echvi_3270 0.41 +0.5
3,875,380 - Echvi_3270 0.41 -2.7
3,875,380 - Echvi_3270 0.41 +0.1
3,875,380 - Echvi_3270 0.41 +0.8
3,875,380 - Echvi_3270 0.41 -2.1
3,875,381 + Echvi_3270 0.41 -1.2
3,875,381 + Echvi_3270 0.41 -0.0
3,875,382 - +1.3
3,875,382 - Echvi_3270 0.41 -0.6
3,875,436 - Echvi_3270 0.46 +0.5
3,875,454 + Echvi_3270 0.47 +0.4
3,875,454 + Echvi_3270 0.47 -0.1
3,875,454 + Echvi_3270 0.47 -0.3
3,875,455 - Echvi_3270 0.47 -0.1
3,875,455 - Echvi_3270 0.47 -1.0
3,875,522 + Echvi_3270 0.53 -0.1
3,875,553 + Echvi_3270 0.56 +0.1
3,875,566 + Echvi_3270 0.57 -0.1
3,875,567 - Echvi_3270 0.57 -1.6
3,875,567 - Echvi_3270 0.57 +0.2
3,875,567 - Echvi_3270 0.57 +0.3
3,875,571 + Echvi_3270 0.58 +0.3
3,875,579 - Echvi_3270 0.59 -1.6
3,875,617 - Echvi_3270 0.62 +0.1
3,875,690 - Echvi_3270 0.69 -0.7
3,875,817 - Echvi_3270 0.80 -1.7
3,875,876 + Echvi_3270 0.85 +0.7
3,875,888 - Echvi_3270 0.86 +2.1
3,875,888 - Echvi_3270 0.86 -0.6
3,876,115 + -1.5
3,876,184 - -1.1
3,876,184 - +0.3
3,876,190 - +0.8
3,876,192 + +0.0
3,876,192 + -0.2
3,876,193 - +1.6
3,876,193 - -0.2
3,876,207 + -0.1
3,876,214 + -0.4
3,876,215 - -1.3
3,876,215 - -0.7
3,876,215 - +0.1
3,876,215 - -2.4
3,876,215 - +0.1
3,876,217 + +0.3
3,876,217 + +0.8
3,876,218 - +0.4
3,876,265 + +1.1
3,876,265 + -0.3
3,876,266 - -0.1
3,876,266 - -0.1
3,876,277 + +0.0
3,876,278 - -0.3
3,876,354 + Echvi_3271 0.11 -0.5
3,876,416 - Echvi_3271 0.20 -0.4
3,876,819 + Echvi_3271 0.81 -1.1
3,876,820 - Echvi_3271 0.81 -1.6
3,876,820 - Echvi_3271 0.81 -0.5
3,876,820 - Echvi_3271 0.81 +0.7
3,876,841 + Echvi_3271 0.85 -1.3
3,876,841 + Echvi_3271 0.85 +1.5
3,876,842 - Echvi_3271 0.85 -1.0
3,876,842 - Echvi_3271 0.85 -0.8
3,876,842 - Echvi_3271 0.85 -0.5
3,876,867 + Echvi_3271 0.89 -1.3
3,876,970 - -0.4
3,876,978 + +0.3
3,876,983 + -0.3
3,876,983 + -2.2
3,876,997 - -0.2
3,877,147 - -0.7
3,877,223 + Echvi_3272 0.20 -0.4
3,877,223 + Echvi_3272 0.20 -0.3
3,877,276 + Echvi_3272 0.27 +0.4
3,877,276 + +1.3
3,877,354 + Echvi_3272 0.39 -0.5
3,877,547 - Echvi_3272 0.67 -0.0
3,877,713 + +0.4
3,877,770 - -0.6
3,877,779 - +1.7
3,877,792 - -1.0

Or see this region's nucleotide sequence