Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1307

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1306 and Echvi_1307 are separated by 215 nucleotidesEchvi_1307 and Echvi_1308 are separated by 124 nucleotidesEchvi_1308 and Echvi_1309 are separated by 493 nucleotides Echvi_1306: Echvi_1306 - Xaa-Pro aminopeptidase, at 1,501,500 to 1,503,104 _1306 Echvi_1307: Echvi_1307 - Uncharacterized proteins of the AP superfamily, at 1,503,320 to 1,504,942 _1307 Echvi_1308: Echvi_1308 - hypothetical protein, at 1,505,067 to 1,505,222 _1308 Echvi_1309: Echvi_1309 - Uncharacterized protein related to plant photosystem II stability/assembly factor, at 1,505,716 to 1,508,517 _1309 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1502.378 kb on + strand, within Echvi_1306at 1502.379 kb on - strand, within Echvi_1306at 1502.429 kb on - strand, within Echvi_1306at 1502.431 kb on + strand, within Echvi_1306at 1502.432 kb on - strand, within Echvi_1306at 1502.495 kb on + strand, within Echvi_1306at 1502.503 kb on + strand, within Echvi_1306at 1502.503 kb on + strand, within Echvi_1306at 1502.504 kb on - strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.505 kb on + strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.506 kb on - strand, within Echvi_1306at 1502.510 kb on + strand, within Echvi_1306at 1502.510 kb on + strand, within Echvi_1306at 1502.686 kb on - strand, within Echvi_1306at 1502.753 kb on + strand, within Echvi_1306at 1502.782 kb on + strand, within Echvi_1306at 1502.782 kb on + strand, within Echvi_1306at 1502.782 kb on + strand, within Echvi_1306at 1502.783 kb on - strand, within Echvi_1306at 1502.811 kb on + strand, within Echvi_1306at 1502.872 kb on + strand, within Echvi_1306at 1502.873 kb on - strand, within Echvi_1306at 1502.897 kb on - strand, within Echvi_1306at 1502.897 kb on - strand, within Echvi_1306at 1502.970 kb on + strandat 1502.970 kb on + strandat 1503.090 kb on + strandat 1503.108 kb on - strandat 1503.141 kb on + strandat 1503.200 kb on - strandat 1503.207 kb on - strandat 1503.266 kb on - strandat 1503.281 kb on - strandat 1503.293 kb on + strandat 1503.293 kb on + strandat 1503.294 kb on - strandat 1503.294 kb on - strandat 1503.315 kb on + strandat 1503.316 kb on - strandat 1503.355 kb on - strandat 1503.438 kb on - strandat 1503.464 kb on - strandat 1503.478 kb on + strandat 1503.521 kb on + strand, within Echvi_1307at 1503.522 kb on - strand, within Echvi_1307at 1503.523 kb on + strand, within Echvi_1307at 1503.524 kb on - strand, within Echvi_1307at 1503.527 kb on + strandat 1503.528 kb on - strand, within Echvi_1307at 1503.528 kb on - strand, within Echvi_1307at 1503.539 kb on + strand, within Echvi_1307at 1503.540 kb on - strand, within Echvi_1307at 1503.564 kb on + strand, within Echvi_1307at 1503.564 kb on + strand, within Echvi_1307at 1503.567 kb on - strand, within Echvi_1307at 1503.567 kb on - strand, within Echvi_1307at 1503.568 kb on + strand, within Echvi_1307at 1503.569 kb on - strand, within Echvi_1307at 1503.569 kb on - strand, within Echvi_1307at 1503.614 kb on + strand, within Echvi_1307at 1503.615 kb on - strand, within Echvi_1307at 1503.671 kb on - strand, within Echvi_1307at 1503.672 kb on + strand, within Echvi_1307at 1503.672 kb on + strand, within Echvi_1307at 1503.673 kb on - strand, within Echvi_1307at 1503.774 kb on + strand, within Echvi_1307at 1503.774 kb on + strand, within Echvi_1307at 1503.775 kb on - strand, within Echvi_1307at 1503.863 kb on - strand, within Echvi_1307at 1503.875 kb on + strand, within Echvi_1307at 1503.876 kb on - strand, within Echvi_1307at 1503.876 kb on - strand, within Echvi_1307at 1503.879 kb on - strand, within Echvi_1307at 1503.939 kb on - strand, within Echvi_1307at 1503.965 kb on + strand, within Echvi_1307at 1503.967 kb on + strand, within Echvi_1307at 1503.980 kb on + strand, within Echvi_1307at 1503.980 kb on + strand, within Echvi_1307at 1503.983 kb on - strand, within Echvi_1307at 1504.105 kb on + strand, within Echvi_1307at 1504.112 kb on + strand, within Echvi_1307at 1504.117 kb on + strand, within Echvi_1307at 1504.142 kb on + strand, within Echvi_1307at 1504.142 kb on + strand, within Echvi_1307at 1504.143 kb on - strand, within Echvi_1307at 1504.147 kb on + strand, within Echvi_1307at 1504.148 kb on - strand, within Echvi_1307at 1504.148 kb on - strand, within Echvi_1307at 1504.220 kb on + strand, within Echvi_1307at 1504.221 kb on - strand, within Echvi_1307at 1504.224 kb on + strand, within Echvi_1307at 1504.224 kb on + strand, within Echvi_1307at 1504.225 kb on - strand, within Echvi_1307at 1504.225 kb on - strand, within Echvi_1307at 1504.264 kb on + strand, within Echvi_1307at 1504.268 kb on + strand, within Echvi_1307at 1504.268 kb on + strand, within Echvi_1307at 1504.268 kb on + strand, within Echvi_1307at 1504.268 kb on + strand, within Echvi_1307at 1504.269 kb on - strand, within Echvi_1307at 1504.269 kb on - strand, within Echvi_1307at 1504.269 kb on - strand, within Echvi_1307at 1504.269 kb on - strand, within Echvi_1307at 1504.269 kb on - strand, within Echvi_1307at 1504.307 kb on + strand, within Echvi_1307at 1504.322 kb on + strand, within Echvi_1307at 1504.337 kb on + strand, within Echvi_1307at 1504.381 kb on + strand, within Echvi_1307at 1504.381 kb on + strand, within Echvi_1307at 1504.381 kb on + strand, within Echvi_1307at 1504.381 kb on + strand, within Echvi_1307at 1504.382 kb on - strand, within Echvi_1307at 1504.385 kb on + strand, within Echvi_1307at 1504.385 kb on + strand, within Echvi_1307at 1504.387 kb on + strand, within Echvi_1307at 1504.400 kb on - strand, within Echvi_1307at 1504.408 kb on + strand, within Echvi_1307at 1504.408 kb on + strand, within Echvi_1307at 1504.409 kb on - strand, within Echvi_1307at 1504.469 kb on + strand, within Echvi_1307at 1504.531 kb on + strand, within Echvi_1307at 1504.531 kb on + strand, within Echvi_1307at 1504.532 kb on - strand, within Echvi_1307at 1504.532 kb on - strand, within Echvi_1307at 1504.616 kb on + strand, within Echvi_1307at 1504.617 kb on - strand, within Echvi_1307at 1504.617 kb on - strand, within Echvi_1307at 1504.617 kb on - strand, within Echvi_1307at 1504.647 kb on - strand, within Echvi_1307at 1504.648 kb on + strand, within Echvi_1307at 1504.753 kb on + strand, within Echvi_1307at 1504.773 kb on - strand, within Echvi_1307at 1504.774 kb on + strand, within Echvi_1307at 1504.774 kb on + strand, within Echvi_1307at 1504.774 kb on + strand, within Echvi_1307at 1504.779 kb on - strand, within Echvi_1307at 1504.784 kb on - strandat 1504.805 kb on + strandat 1504.805 kb on + strandat 1504.882 kb on - strandat 1504.890 kb on + strandat 1504.890 kb on + strandat 1504.890 kb on + strandat 1504.890 kb on + strandat 1504.890 kb on + strandat 1504.890 kb on + strandat 1504.891 kb on - strandat 1504.891 kb on - strandat 1504.891 kb on - strandat 1504.891 kb on - strandat 1504.891 kb on - strandat 1504.891 kb on - strandat 1504.896 kb on + strandat 1505.005 kb on + strandat 1505.044 kb on + strandat 1505.060 kb on + strandat 1505.111 kb on - strand, within Echvi_1308at 1505.121 kb on - strand, within Echvi_1308at 1505.123 kb on - strand, within Echvi_1308at 1505.194 kb on + strand, within Echvi_1308at 1505.194 kb on + strand, within Echvi_1308at 1505.194 kb on + strand, within Echvi_1308at 1505.196 kb on + strand, within Echvi_1308at 1505.196 kb on + strand, within Echvi_1308at 1505.247 kb on + strandat 1505.247 kb on + strandat 1505.283 kb on - strandat 1505.283 kb on - strandat 1505.295 kb on - strandat 1505.363 kb on + strandat 1505.363 kb on + strandat 1505.497 kb on + strandat 1505.533 kb on - strandat 1505.600 kb on - strandat 1505.605 kb on - strandat 1505.691 kb on + strandat 1505.692 kb on - strandat 1505.692 kb on - strandat 1505.692 kb on - strandat 1505.733 kb on + strandat 1505.770 kb on + strandat 1505.776 kb on + strandat 1505.776 kb on + strandat 1505.776 kb on + strandat 1505.788 kb on + strandat 1505.814 kb on + strandat 1505.815 kb on - strandat 1505.815 kb on - strandat 1505.815 kb on - strandat 1505.815 kb on - strandat 1505.840 kb on - strandat 1505.843 kb on + strandat 1505.843 kb on + strandat 1505.844 kb on - strandat 1505.844 kb on - strandat 1505.896 kb on + strandat 1505.896 kb on + strandat 1505.896 kb on + strandat 1505.897 kb on - strandat 1505.897 kb on - strandat 1505.910 kb on + strandat 1505.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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1,502,378 + Echvi_1306 0.55 +0.3
1,502,379 - Echvi_1306 0.55 -0.3
1,502,429 - Echvi_1306 0.58 -1.6
1,502,431 + Echvi_1306 0.58 -0.8
1,502,432 - Echvi_1306 0.58 +1.8
1,502,495 + Echvi_1306 0.62 +0.0
1,502,503 + Echvi_1306 0.62 +0.0
1,502,503 + Echvi_1306 0.62 +1.6
1,502,504 - Echvi_1306 0.63 +0.5
1,502,505 + Echvi_1306 0.63 +2.0
1,502,505 + Echvi_1306 0.63 -1.7
1,502,505 + Echvi_1306 0.63 -1.1
1,502,505 + Echvi_1306 0.63 -0.1
1,502,505 + Echvi_1306 0.63 +0.7
1,502,505 + Echvi_1306 0.63 -0.1
1,502,506 - Echvi_1306 0.63 -1.3
1,502,506 - Echvi_1306 0.63 +1.5
1,502,506 - Echvi_1306 0.63 -0.9
1,502,506 - Echvi_1306 0.63 -0.3
1,502,506 - Echvi_1306 0.63 +0.2
1,502,506 - Echvi_1306 0.63 -0.1
1,502,510 + Echvi_1306 0.63 -0.2
1,502,510 + Echvi_1306 0.63 +0.2
1,502,686 - Echvi_1306 0.74 +2.1
1,502,753 + Echvi_1306 0.78 +2.6
1,502,782 + Echvi_1306 0.80 +0.1
1,502,782 + Echvi_1306 0.80 -0.9
1,502,782 + Echvi_1306 0.80 -0.9
1,502,783 - Echvi_1306 0.80 +0.3
1,502,811 + Echvi_1306 0.82 -0.2
1,502,872 + Echvi_1306 0.85 +0.1
1,502,873 - Echvi_1306 0.86 -0.4
1,502,897 - Echvi_1306 0.87 +0.8
1,502,897 - Echvi_1306 0.87 +2.3
1,502,970 + +0.4
1,502,970 + +2.4
1,503,090 + +2.3
1,503,108 - -0.4
1,503,141 + +0.3
1,503,200 - -0.3
1,503,207 - -0.8
1,503,266 - +0.2
1,503,281 - +0.4
1,503,293 + -1.0
1,503,293 + -0.1
1,503,294 - -0.5
1,503,294 - -0.4
1,503,315 + +0.8
1,503,316 - +0.8
1,503,355 - -0.6
1,503,438 - +0.4
1,503,464 - -0.7
1,503,478 + +1.8
1,503,521 + Echvi_1307 0.12 -1.5
1,503,522 - Echvi_1307 0.12 +0.5
1,503,523 + Echvi_1307 0.13 +0.2
1,503,524 - Echvi_1307 0.13 -0.6
1,503,527 + +1.9
1,503,528 - Echvi_1307 0.13 -1.5
1,503,528 - Echvi_1307 0.13 -1.0
1,503,539 + Echvi_1307 0.13 -0.6
1,503,540 - Echvi_1307 0.14 +0.4
1,503,564 + Echvi_1307 0.15 -0.1
1,503,564 + Echvi_1307 0.15 +1.3
1,503,567 - Echvi_1307 0.15 -1.1
1,503,567 - Echvi_1307 0.15 +0.0
1,503,568 + Echvi_1307 0.15 -0.8
1,503,569 - Echvi_1307 0.15 -0.7
1,503,569 - Echvi_1307 0.15 -1.3
1,503,614 + Echvi_1307 0.18 -2.0
1,503,615 - Echvi_1307 0.18 -0.5
1,503,671 - Echvi_1307 0.22 -0.5
1,503,672 + Echvi_1307 0.22 +0.1
1,503,672 + Echvi_1307 0.22 -0.3
1,503,673 - Echvi_1307 0.22 -1.1
1,503,774 + Echvi_1307 0.28 -0.2
1,503,774 + Echvi_1307 0.28 -0.1
1,503,775 - Echvi_1307 0.28 +0.2
1,503,863 - Echvi_1307 0.33 -0.4
1,503,875 + Echvi_1307 0.34 -0.8
1,503,876 - Echvi_1307 0.34 -1.6
1,503,876 - Echvi_1307 0.34 -0.5
1,503,879 - Echvi_1307 0.34 -0.9
1,503,939 - Echvi_1307 0.38 -2.5
1,503,965 + Echvi_1307 0.40 -1.0
1,503,967 + Echvi_1307 0.40 -2.8
1,503,980 + Echvi_1307 0.41 -0.3
1,503,980 + Echvi_1307 0.41 -0.3
1,503,983 - Echvi_1307 0.41 -0.6
1,504,105 + Echvi_1307 0.48 +0.0
1,504,112 + Echvi_1307 0.49 -1.7
1,504,117 + Echvi_1307 0.49 +1.8
1,504,142 + Echvi_1307 0.51 -1.4
1,504,142 + Echvi_1307 0.51 -0.7
1,504,143 - Echvi_1307 0.51 -0.7
1,504,147 + Echvi_1307 0.51 +1.0
1,504,148 - Echvi_1307 0.51 -2.1
1,504,148 - Echvi_1307 0.51 +1.3
1,504,220 + Echvi_1307 0.55 +0.5
1,504,221 - Echvi_1307 0.56 -0.4
1,504,224 + Echvi_1307 0.56 -1.0
1,504,224 + Echvi_1307 0.56 -0.3
1,504,225 - Echvi_1307 0.56 -0.8
1,504,225 - Echvi_1307 0.56 +0.8
1,504,264 + Echvi_1307 0.58 -1.5
1,504,268 + Echvi_1307 0.58 -0.7
1,504,268 + Echvi_1307 0.58 -0.8
1,504,268 + Echvi_1307 0.58 -0.1
1,504,268 + Echvi_1307 0.58 -0.2
1,504,269 - Echvi_1307 0.58 -0.5
1,504,269 - Echvi_1307 0.58 -0.7
1,504,269 - Echvi_1307 0.58 +0.4
1,504,269 - Echvi_1307 0.58 -2.1
1,504,269 - Echvi_1307 0.58 -0.7
1,504,307 + Echvi_1307 0.61 +0.9
1,504,322 + Echvi_1307 0.62 -0.2
1,504,337 + Echvi_1307 0.63 +0.9
1,504,381 + Echvi_1307 0.65 +0.6
1,504,381 + Echvi_1307 0.65 -1.0
1,504,381 + Echvi_1307 0.65 -0.6
1,504,381 + Echvi_1307 0.65 -1.5
1,504,382 - Echvi_1307 0.65 -0.3
1,504,385 + Echvi_1307 0.66 -0.2
1,504,385 + Echvi_1307 0.66 -0.3
1,504,387 + Echvi_1307 0.66 -0.2
1,504,400 - Echvi_1307 0.67 -0.6
1,504,408 + Echvi_1307 0.67 +0.2
1,504,408 + Echvi_1307 0.67 -2.4
1,504,409 - Echvi_1307 0.67 -0.3
1,504,469 + Echvi_1307 0.71 +0.4
1,504,531 + Echvi_1307 0.75 -0.3
1,504,531 + Echvi_1307 0.75 -0.8
1,504,532 - Echvi_1307 0.75 -0.4
1,504,532 - Echvi_1307 0.75 -1.5
1,504,616 + Echvi_1307 0.80 +0.7
1,504,617 - Echvi_1307 0.80 -0.6
1,504,617 - Echvi_1307 0.80 -0.5
1,504,617 - Echvi_1307 0.80 -0.5
1,504,647 - Echvi_1307 0.82 -0.8
1,504,648 + Echvi_1307 0.82 -0.4
1,504,753 + Echvi_1307 0.88 -0.5
1,504,773 - Echvi_1307 0.90 +0.9
1,504,774 + Echvi_1307 0.90 +0.2
1,504,774 + Echvi_1307 0.90 +0.1
1,504,774 + Echvi_1307 0.90 -1.0
1,504,779 - Echvi_1307 0.90 -0.1
1,504,784 - -2.1
1,504,805 + -1.0
1,504,805 + -1.7
1,504,882 - -0.8
1,504,890 + -0.1
1,504,890 + -0.8
1,504,890 + -0.3
1,504,890 + -2.5
1,504,890 + +2.5
1,504,890 + +0.0
1,504,891 - -0.4
1,504,891 - -0.2
1,504,891 - -1.4
1,504,891 - -2.8
1,504,891 - +0.3
1,504,891 - -0.1
1,504,896 + -0.3
1,505,005 + +1.8
1,505,044 + +0.1
1,505,060 + -0.1
1,505,111 - Echvi_1308 0.28 +0.3
1,505,121 - Echvi_1308 0.35 +0.4
1,505,123 - Echvi_1308 0.36 -1.1
1,505,194 + Echvi_1308 0.81 -0.7
1,505,194 + Echvi_1308 0.81 +0.5
1,505,194 + Echvi_1308 0.81 -0.1
1,505,196 + Echvi_1308 0.83 +1.3
1,505,196 + Echvi_1308 0.83 -0.4
1,505,247 + -0.4
1,505,247 + -2.0
1,505,283 - +0.3
1,505,283 - +1.4
1,505,295 - +1.0
1,505,363 + -0.3
1,505,363 + -2.1
1,505,497 + +0.1
1,505,533 - -0.1
1,505,600 - -0.0
1,505,605 - -1.2
1,505,691 + -0.1
1,505,692 - -0.0
1,505,692 - -0.7
1,505,692 - +0.2
1,505,733 + +1.2
1,505,770 + +0.2
1,505,776 + +0.0
1,505,776 + -0.6
1,505,776 + -0.7
1,505,788 + -1.5
1,505,814 + +0.4
1,505,815 - -0.3
1,505,815 - -0.1
1,505,815 - +0.6
1,505,815 - -0.4
1,505,840 - +2.2
1,505,843 + -0.6
1,505,843 + +0.7
1,505,844 - +1.4
1,505,844 - +2.6
1,505,896 + -0.3
1,505,896 + -0.3
1,505,896 + -0.2
1,505,897 - +0.8
1,505,897 - +3.2
1,505,910 + -1.1
1,505,942 - -0.2

Or see this region's nucleotide sequence