Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0328

Experiment: m.b. Chloride 750 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0327 and Echvi_0328 are separated by 280 nucleotidesEchvi_0328 and Echvi_0329 are separated by 69 nucleotidesEchvi_0329 and Echvi_0330 are separated by 225 nucleotides Echvi_0327: Echvi_0327 - hypothetical protein, at 343,255 to 344,832 _0327 Echvi_0328: Echvi_0328 - hypothetical protein, at 345,113 to 345,778 _0328 Echvi_0329: Echvi_0329 - hypothetical protein, at 345,848 to 346,051 _0329 Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089 _0330 Position (kb) 345 346Strain fitness (log2 ratio) -2 -1 0 1 2at 344.210 kb on - strand, within Echvi_0327at 344.210 kb on - strand, within Echvi_0327at 344.221 kb on + strand, within Echvi_0327at 344.221 kb on + strand, within Echvi_0327at 344.231 kb on + strand, within Echvi_0327at 344.232 kb on - strand, within Echvi_0327at 344.235 kb on + strand, within Echvi_0327at 344.235 kb on + strand, within Echvi_0327at 344.236 kb on - strand, within Echvi_0327at 344.236 kb on - strand, within Echvi_0327at 344.254 kb on + strand, within Echvi_0327at 344.269 kb on + strand, within Echvi_0327at 344.270 kb on - strand, within Echvi_0327at 344.270 kb on - strand, within Echvi_0327at 344.270 kb on - strand, within Echvi_0327at 344.299 kb on + strand, within Echvi_0327at 344.299 kb on + strand, within Echvi_0327at 344.299 kb on + strand, within Echvi_0327at 344.300 kb on - strand, within Echvi_0327at 344.311 kb on - strand, within Echvi_0327at 344.319 kb on - strand, within Echvi_0327at 344.323 kb on + strand, within Echvi_0327at 344.323 kb on + strand, within Echvi_0327at 344.323 kb on + strand, within Echvi_0327at 344.323 kb on + strand, within Echvi_0327at 344.323 kb on + strand, within Echvi_0327at 344.324 kb on - strand, within Echvi_0327at 344.324 kb on - strand, within Echvi_0327at 344.324 kb on - strand, within Echvi_0327at 344.337 kb on + strand, within Echvi_0327at 344.352 kb on + strand, within Echvi_0327at 344.352 kb on + strand, within Echvi_0327at 344.354 kb on + strand, within Echvi_0327at 344.355 kb on - strand, within Echvi_0327at 344.355 kb on - strand, within Echvi_0327at 344.355 kb on - strand, within Echvi_0327at 344.367 kb on - strand, within Echvi_0327at 344.400 kb on + strand, within Echvi_0327at 344.438 kb on + strand, within Echvi_0327at 344.515 kb on + strand, within Echvi_0327at 344.516 kb on - strand, within Echvi_0327at 344.519 kb on + strand, within Echvi_0327at 344.519 kb on + strand, within Echvi_0327at 344.519 kb on + strand, within Echvi_0327at 344.519 kb on + strand, within Echvi_0327at 344.520 kb on - strand, within Echvi_0327at 344.520 kb on - strand, within Echvi_0327at 344.520 kb on - strand, within Echvi_0327at 344.555 kb on + strand, within Echvi_0327at 344.555 kb on + strand, within Echvi_0327at 344.572 kb on + strand, within Echvi_0327at 344.596 kb on - strand, within Echvi_0327at 344.596 kb on - strand, within Echvi_0327at 344.597 kb on + strand, within Echvi_0327at 344.597 kb on + strand, within Echvi_0327at 344.598 kb on - strand, within Echvi_0327at 344.655 kb on + strand, within Echvi_0327at 344.658 kb on - strand, within Echvi_0327at 344.667 kb on + strand, within Echvi_0327at 344.670 kb on - strand, within Echvi_0327at 344.670 kb on - strand, within Echvi_0327at 344.692 kb on + strandat 344.693 kb on - strandat 344.696 kb on - strandat 344.696 kb on - strandat 344.705 kb on + strandat 344.708 kb on - strandat 344.734 kb on - strandat 344.878 kb on - strandat 344.878 kb on - strandat 344.878 kb on - strandat 344.878 kb on - strandat 344.879 kb on + strandat 344.880 kb on - strandat 344.899 kb on - strandat 344.932 kb on + strandat 344.944 kb on + strandat 344.982 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.009 kb on + strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.029 kb on + strandat 345.094 kb on + strandat 345.094 kb on + strandat 345.094 kb on + strandat 345.094 kb on + strandat 345.105 kb on - strandat 345.114 kb on + strandat 345.115 kb on - strandat 345.116 kb on + strandat 345.117 kb on - strandat 345.117 kb on - strandat 345.117 kb on - strandat 345.117 kb on - strandat 345.142 kb on - strandat 345.143 kb on + strandat 345.144 kb on - strandat 345.164 kb on - strandat 345.170 kb on + strandat 345.171 kb on - strandat 345.175 kb on - strandat 345.221 kb on + strand, within Echvi_0328at 345.222 kb on - strand, within Echvi_0328at 345.238 kb on + strand, within Echvi_0328at 345.291 kb on - strand, within Echvi_0328at 345.303 kb on + strand, within Echvi_0328at 345.304 kb on - strand, within Echvi_0328at 345.304 kb on - strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.369 kb on - strand, within Echvi_0328at 345.369 kb on - strand, within Echvi_0328at 345.408 kb on + strand, within Echvi_0328at 345.416 kb on + strand, within Echvi_0328at 345.438 kb on - strand, within Echvi_0328at 345.476 kb on - strand, within Echvi_0328at 345.481 kb on + strand, within Echvi_0328at 345.506 kb on - strand, within Echvi_0328at 345.632 kb on + strand, within Echvi_0328at 345.731 kb on - strandat 345.770 kb on + strandat 345.818 kb on + strandat 345.829 kb on + strandat 345.829 kb on + strandat 345.851 kb on + strandat 345.917 kb on + strand, within Echvi_0329at 345.944 kb on + strand, within Echvi_0329at 345.945 kb on - strand, within Echvi_0329at 345.946 kb on + strand, within Echvi_0329at 345.998 kb on - strand, within Echvi_0329at 345.999 kb on + strand, within Echvi_0329at 346.055 kb on + strandat 346.056 kb on - strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.094 kb on - strandat 346.158 kb on + strandat 346.159 kb on - strandat 346.161 kb on + strandat 346.162 kb on - strandat 346.162 kb on - strandat 346.165 kb on - strandat 346.165 kb on - strandat 346.261 kb on - strandat 346.278 kb on + strandat 346.378 kb on - strand, within Echvi_0330at 346.562 kb on - strand, within Echvi_0330at 346.606 kb on - strand, within Echvi_0330

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 750 mM
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344,210 - Echvi_0327 0.61 +1.2
344,210 - Echvi_0327 0.61 -0.2
344,221 + Echvi_0327 0.61 +0.2
344,221 + Echvi_0327 0.61 -0.2
344,231 + Echvi_0327 0.62 -0.2
344,232 - Echvi_0327 0.62 +1.0
344,235 + Echvi_0327 0.62 -0.8
344,235 + Echvi_0327 0.62 +0.1
344,236 - Echvi_0327 0.62 +0.9
344,236 - Echvi_0327 0.62 -0.6
344,254 + Echvi_0327 0.63 -0.8
344,269 + Echvi_0327 0.64 +0.2
344,270 - Echvi_0327 0.64 +1.4
344,270 - Echvi_0327 0.64 -0.9
344,270 - Echvi_0327 0.64 -0.3
344,299 + Echvi_0327 0.66 -1.0
344,299 + Echvi_0327 0.66 +1.0
344,299 + Echvi_0327 0.66 -0.4
344,300 - Echvi_0327 0.66 +0.9
344,311 - Echvi_0327 0.67 -0.4
344,319 - Echvi_0327 0.67 +0.5
344,323 + Echvi_0327 0.68 -0.4
344,323 + Echvi_0327 0.68 -0.3
344,323 + Echvi_0327 0.68 -0.8
344,323 + Echvi_0327 0.68 -1.1
344,323 + Echvi_0327 0.68 -2.0
344,324 - Echvi_0327 0.68 -0.3
344,324 - Echvi_0327 0.68 +1.2
344,324 - Echvi_0327 0.68 +1.2
344,337 + Echvi_0327 0.69 -0.1
344,352 + Echvi_0327 0.70 -1.7
344,352 + Echvi_0327 0.70 +0.9
344,354 + Echvi_0327 0.70 -1.1
344,355 - Echvi_0327 0.70 +1.5
344,355 - Echvi_0327 0.70 +0.2
344,355 - Echvi_0327 0.70 -0.8
344,367 - Echvi_0327 0.70 -0.3
344,400 + Echvi_0327 0.73 +0.6
344,438 + Echvi_0327 0.75 +1.0
344,515 + Echvi_0327 0.80 -0.6
344,516 - Echvi_0327 0.80 -1.6
344,519 + Echvi_0327 0.80 -1.2
344,519 + Echvi_0327 0.80 -0.7
344,519 + Echvi_0327 0.80 -0.1
344,519 + Echvi_0327 0.80 -1.4
344,520 - Echvi_0327 0.80 +0.9
344,520 - Echvi_0327 0.80 +0.3
344,520 - Echvi_0327 0.80 -0.8
344,555 + Echvi_0327 0.82 -0.2
344,555 + Echvi_0327 0.82 -1.9
344,572 + Echvi_0327 0.83 +0.7
344,596 - Echvi_0327 0.85 -0.6
344,596 - Echvi_0327 0.85 +0.6
344,597 + Echvi_0327 0.85 -0.7
344,597 + Echvi_0327 0.85 -0.1
344,598 - Echvi_0327 0.85 +1.0
344,655 + Echvi_0327 0.89 +0.3
344,658 - Echvi_0327 0.89 -1.0
344,667 + Echvi_0327 0.89 -1.0
344,670 - Echvi_0327 0.90 -1.0
344,670 - Echvi_0327 0.90 +0.5
344,692 + -0.3
344,693 - -1.6
344,696 - +0.3
344,696 - +0.5
344,705 + +0.7
344,708 - +0.7
344,734 - -0.6
344,878 - -0.2
344,878 - -0.1
344,878 - -0.6
344,878 - +0.1
344,879 + +1.2
344,880 - -0.9
344,899 - -1.0
344,932 + -1.3
344,944 + +0.6
344,982 + +1.2
345,009 + +1.1
345,009 + +0.2
345,009 + -1.1
345,009 + +0.7
345,009 + +1.3
345,010 - +0.6
345,010 - +0.9
345,029 + -0.2
345,094 + -0.1
345,094 + -0.8
345,094 + +0.5
345,094 + +0.4
345,105 - -0.1
345,114 + -0.6
345,115 - -1.4
345,116 + -1.1
345,117 - -0.6
345,117 - +0.2
345,117 - -0.4
345,117 - -0.3
345,142 - +0.3
345,143 + -1.4
345,144 - -0.2
345,164 - -1.3
345,170 + -1.4
345,171 - -1.7
345,175 - -0.1
345,221 + Echvi_0328 0.16 -0.4
345,222 - Echvi_0328 0.16 -0.3
345,238 + Echvi_0328 0.19 +0.8
345,291 - Echvi_0328 0.27 +1.2
345,303 + Echvi_0328 0.29 +0.8
345,304 - Echvi_0328 0.29 -1.0
345,304 - Echvi_0328 0.29 -0.7
345,368 + Echvi_0328 0.38 +1.0
345,368 + Echvi_0328 0.38 +1.2
345,368 + Echvi_0328 0.38 +0.1
345,368 + Echvi_0328 0.38 +0.2
345,369 - Echvi_0328 0.38 -0.5
345,369 - Echvi_0328 0.38 +0.1
345,408 + Echvi_0328 0.44 +0.6
345,416 + Echvi_0328 0.45 +2.1
345,438 - Echvi_0328 0.49 +0.4
345,476 - Echvi_0328 0.55 +0.5
345,481 + Echvi_0328 0.55 -0.7
345,506 - Echvi_0328 0.59 +1.3
345,632 + Echvi_0328 0.78 -2.3
345,731 - -0.2
345,770 + +0.2
345,818 + -1.9
345,829 + -0.1
345,829 + +0.1
345,851 + +0.0
345,917 + Echvi_0329 0.34 -1.2
345,944 + Echvi_0329 0.47 +0.5
345,945 - Echvi_0329 0.48 +2.5
345,946 + Echvi_0329 0.48 +0.1
345,998 - Echvi_0329 0.74 +0.0
345,999 + Echvi_0329 0.74 -0.3
346,055 + -0.4
346,056 - +1.0
346,058 + -0.6
346,058 + -0.2
346,058 + +0.6
346,058 + +0.9
346,094 - -0.1
346,158 + -0.4
346,159 - -0.2
346,161 + -0.5
346,162 - -0.5
346,162 - -0.7
346,165 - +0.9
346,165 - +0.2
346,261 - -0.9
346,278 + -0.8
346,378 - Echvi_0330 0.12 -0.0
346,562 - Echvi_0330 0.35 +0.2
346,606 - Echvi_0330 0.40 +0.5

Or see this region's nucleotide sequence