Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4512

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4511 and EX28DRAFT_4512 overlap by 1 nucleotidesEX28DRAFT_4512 and EX28DRAFT_4513 are separated by 41 nucleotides EX28DRAFT_4511: EX28DRAFT_4511 - Xaa-Pro aminopeptidase, at 77,726 to 79,057 _4511 EX28DRAFT_4512: EX28DRAFT_4512 - Uncharacterized conserved protein, at 79,057 to 79,671 _4512 EX28DRAFT_4513: EX28DRAFT_4513 - Trk-type K+ transport systems, membrane components, at 79,713 to 81,164 _4513 Position (kb) 79 80Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 78.107 kb on + strand, within EX28DRAFT_4511at 78.108 kb on - strand, within EX28DRAFT_4511at 78.109 kb on + strand, within EX28DRAFT_4511at 78.194 kb on + strand, within EX28DRAFT_4511at 78.327 kb on - strand, within EX28DRAFT_4511at 78.477 kb on - strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.605 kb on + strand, within EX28DRAFT_4511at 78.655 kb on + strand, within EX28DRAFT_4511at 78.818 kb on - strand, within EX28DRAFT_4511at 78.827 kb on + strand, within EX28DRAFT_4511at 78.828 kb on - strand, within EX28DRAFT_4511at 78.828 kb on - strand, within EX28DRAFT_4511at 78.887 kb on + strand, within EX28DRAFT_4511at 78.887 kb on + strand, within EX28DRAFT_4511at 78.888 kb on - strand, within EX28DRAFT_4511at 78.998 kb on - strandat 78.998 kb on - strandat 79.125 kb on + strand, within EX28DRAFT_4512at 79.125 kb on + strand, within EX28DRAFT_4512at 79.152 kb on - strand, within EX28DRAFT_4512at 79.342 kb on - strand, within EX28DRAFT_4512at 79.364 kb on - strand, within EX28DRAFT_4512at 79.446 kb on + strand, within EX28DRAFT_4512at 79.446 kb on + strand, within EX28DRAFT_4512at 79.471 kb on + strand, within EX28DRAFT_4512at 79.471 kb on + strand, within EX28DRAFT_4512at 79.473 kb on + strand, within EX28DRAFT_4512at 79.474 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.575 kb on - strand, within EX28DRAFT_4512at 79.800 kb on - strandat 79.976 kb on + strand, within EX28DRAFT_4513at 79.976 kb on + strand, within EX28DRAFT_4513at 79.995 kb on - strand, within EX28DRAFT_4513at 80.227 kb on - strand, within EX28DRAFT_4513at 80.273 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.277 kb on + strand, within EX28DRAFT_4513at 80.278 kb on - strand, within EX28DRAFT_4513at 80.278 kb on - strand, within EX28DRAFT_4513at 80.278 kb on - strand, within EX28DRAFT_4513at 80.278 kb on - strand, within EX28DRAFT_4513at 80.278 kb on - strand, within EX28DRAFT_4513at 80.281 kb on + strand, within EX28DRAFT_4513at 80.282 kb on - strand, within EX28DRAFT_4513at 80.282 kb on - strand, within EX28DRAFT_4513at 80.282 kb on - strand, within EX28DRAFT_4513at 80.427 kb on - strand, within EX28DRAFT_4513at 80.466 kb on - strand, within EX28DRAFT_4513at 80.469 kb on + strand, within EX28DRAFT_4513at 80.514 kb on + strand, within EX28DRAFT_4513at 80.558 kb on + strand, within EX28DRAFT_4513at 80.559 kb on - strand, within EX28DRAFT_4513at 80.627 kb on - strand, within EX28DRAFT_4513at 80.650 kb on + strand, within EX28DRAFT_4513

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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78,107 + EX28DRAFT_4511 0.29 +0.2
78,108 - EX28DRAFT_4511 0.29 +0.6
78,109 + EX28DRAFT_4511 0.29 -0.4
78,194 + EX28DRAFT_4511 0.35 +0.2
78,327 - EX28DRAFT_4511 0.45 +0.5
78,477 - EX28DRAFT_4511 0.56 -1.0
78,605 + EX28DRAFT_4511 0.66 -4.0
78,605 + EX28DRAFT_4511 0.66 -0.1
78,605 + EX28DRAFT_4511 0.66 -0.4
78,605 + EX28DRAFT_4511 0.66 +0.3
78,605 + EX28DRAFT_4511 0.66 +0.5
78,605 + EX28DRAFT_4511 0.66 +0.0
78,655 + EX28DRAFT_4511 0.70 +0.3
78,818 - EX28DRAFT_4511 0.82 +0.1
78,827 + EX28DRAFT_4511 0.83 -0.5
78,828 - EX28DRAFT_4511 0.83 +0.3
78,828 - EX28DRAFT_4511 0.83 -3.0
78,887 + EX28DRAFT_4511 0.87 +1.2
78,887 + EX28DRAFT_4511 0.87 +0.0
78,888 - EX28DRAFT_4511 0.87 +0.2
78,998 - +0.4
78,998 - +0.6
79,125 + EX28DRAFT_4512 0.11 +0.2
79,125 + EX28DRAFT_4512 0.11 +1.6
79,152 - EX28DRAFT_4512 0.15 -0.5
79,342 - EX28DRAFT_4512 0.46 +0.7
79,364 - EX28DRAFT_4512 0.50 +1.2
79,446 + EX28DRAFT_4512 0.63 +0.9
79,446 + EX28DRAFT_4512 0.63 -0.7
79,471 + EX28DRAFT_4512 0.67 +0.4
79,471 + EX28DRAFT_4512 0.67 -0.0
79,473 + EX28DRAFT_4512 0.68 -0.7
79,474 - EX28DRAFT_4512 0.68 +1.0
79,575 - EX28DRAFT_4512 0.84 -0.3
79,575 - EX28DRAFT_4512 0.84 -0.1
79,575 - EX28DRAFT_4512 0.84 +1.7
79,800 - +0.4
79,976 + EX28DRAFT_4513 0.18 +0.7
79,976 + EX28DRAFT_4513 0.18 +0.5
79,995 - EX28DRAFT_4513 0.19 -0.4
80,227 - EX28DRAFT_4513 0.35 -0.8
80,273 + EX28DRAFT_4513 0.39 +0.1
80,277 + EX28DRAFT_4513 0.39 +0.8
80,277 + EX28DRAFT_4513 0.39 -1.6
80,277 + EX28DRAFT_4513 0.39 -1.1
80,277 + EX28DRAFT_4513 0.39 -1.2
80,277 + EX28DRAFT_4513 0.39 -0.4
80,277 + EX28DRAFT_4513 0.39 -0.4
80,278 - EX28DRAFT_4513 0.39 -1.0
80,278 - EX28DRAFT_4513 0.39 +0.9
80,278 - EX28DRAFT_4513 0.39 +0.6
80,278 - EX28DRAFT_4513 0.39 -0.4
80,278 - EX28DRAFT_4513 0.39 -1.5
80,281 + EX28DRAFT_4513 0.39 -0.3
80,282 - EX28DRAFT_4513 0.39 +0.0
80,282 - EX28DRAFT_4513 0.39 -0.6
80,282 - EX28DRAFT_4513 0.39 +0.3
80,427 - EX28DRAFT_4513 0.49 +0.2
80,466 - EX28DRAFT_4513 0.52 -0.9
80,469 + EX28DRAFT_4513 0.52 -0.6
80,514 + EX28DRAFT_4513 0.55 -2.2
80,558 + EX28DRAFT_4513 0.58 -2.5
80,559 - EX28DRAFT_4513 0.58 -2.3
80,627 - EX28DRAFT_4513 0.63 -0.8
80,650 + EX28DRAFT_4513 0.65 -1.8

Or see this region's nucleotide sequence