Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4366

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4365 and EX28DRAFT_4366 overlap by 4 nucleotidesEX28DRAFT_4366 and EX28DRAFT_4367 are separated by 88 nucleotidesEX28DRAFT_4367 and EX28DRAFT_4368 overlap by 7 nucleotides EX28DRAFT_4365: EX28DRAFT_4365 - DNA-binding winged-HTH domains, at 32,710 to 33,453 _4365 EX28DRAFT_4366: EX28DRAFT_4366 - hypothetical protein, at 33,450 to 33,920 _4366 EX28DRAFT_4367: EX28DRAFT_4367 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 34,009 to 34,608 _4367 EX28DRAFT_4368: EX28DRAFT_4368 - Predicted membrane protein, at 34,602 to 35,483 _4368 Position (kb) 33 34Strain fitness (log2 ratio) -2 -1 0 1 2 3at 32.511 kb on - strandat 32.622 kb on + strandat 32.653 kb on + strandat 32.654 kb on - strandat 32.654 kb on - strandat 32.657 kb on + strandat 32.865 kb on + strand, within EX28DRAFT_4365at 32.911 kb on - strand, within EX28DRAFT_4365at 33.033 kb on - strand, within EX28DRAFT_4365at 33.080 kb on + strand, within EX28DRAFT_4365at 33.081 kb on - strand, within EX28DRAFT_4365at 33.164 kb on + strand, within EX28DRAFT_4365at 33.167 kb on + strand, within EX28DRAFT_4365at 33.168 kb on - strand, within EX28DRAFT_4365at 33.171 kb on - strand, within EX28DRAFT_4365at 33.172 kb on + strand, within EX28DRAFT_4365at 33.173 kb on - strand, within EX28DRAFT_4365at 33.173 kb on - strand, within EX28DRAFT_4365at 33.174 kb on + strand, within EX28DRAFT_4365at 33.174 kb on + strand, within EX28DRAFT_4365at 33.175 kb on - strand, within EX28DRAFT_4365at 33.175 kb on - strand, within EX28DRAFT_4365at 33.253 kb on + strand, within EX28DRAFT_4365at 33.261 kb on + strand, within EX28DRAFT_4365at 33.283 kb on + strand, within EX28DRAFT_4365at 33.332 kb on - strand, within EX28DRAFT_4365at 33.352 kb on - strand, within EX28DRAFT_4365at 33.355 kb on - strand, within EX28DRAFT_4365at 33.417 kb on - strandat 33.417 kb on - strandat 33.417 kb on - strandat 33.421 kb on - strandat 33.421 kb on - strandat 33.584 kb on + strand, within EX28DRAFT_4366at 33.647 kb on + strand, within EX28DRAFT_4366at 33.659 kb on - strand, within EX28DRAFT_4366at 33.696 kb on + strand, within EX28DRAFT_4366at 33.697 kb on - strand, within EX28DRAFT_4366at 33.711 kb on + strand, within EX28DRAFT_4366at 33.712 kb on - strand, within EX28DRAFT_4366at 33.731 kb on - strand, within EX28DRAFT_4366at 33.786 kb on - strand, within EX28DRAFT_4366at 33.897 kb on + strandat 33.898 kb on - strandat 33.898 kb on - strandat 33.918 kb on + strandat 33.938 kb on + strandat 33.938 kb on + strandat 33.938 kb on + strandat 33.952 kb on - strandat 33.981 kb on - strandat 33.981 kb on - strandat 33.981 kb on - strandat 33.981 kb on - strandat 34.004 kb on + strandat 34.015 kb on + strandat 34.015 kb on + strandat 34.015 kb on + strandat 34.017 kb on + strandat 34.028 kb on + strandat 34.038 kb on - strandat 34.208 kb on + strand, within EX28DRAFT_4367at 34.209 kb on - strand, within EX28DRAFT_4367at 34.209 kb on - strand, within EX28DRAFT_4367at 34.250 kb on + strand, within EX28DRAFT_4367at 34.251 kb on - strand, within EX28DRAFT_4367at 34.290 kb on + strand, within EX28DRAFT_4367at 34.333 kb on - strand, within EX28DRAFT_4367at 34.370 kb on - strand, within EX28DRAFT_4367at 34.402 kb on + strand, within EX28DRAFT_4367at 34.518 kb on + strand, within EX28DRAFT_4367at 34.518 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.520 kb on + strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.521 kb on - strand, within EX28DRAFT_4367at 34.543 kb on - strand, within EX28DRAFT_4367at 34.585 kb on + strandat 34.586 kb on - strandat 34.601 kb on + strandat 34.601 kb on + strandat 34.601 kb on + strandat 34.606 kb on + strandat 34.680 kb on - strandat 34.869 kb on + strand, within EX28DRAFT_4368at 34.869 kb on + strand, within EX28DRAFT_4368at 34.870 kb on - strand, within EX28DRAFT_4368at 34.870 kb on - strand, within EX28DRAFT_4368

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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32,511 - +0.8
32,622 + -1.3
32,653 + -1.0
32,654 - -0.1
32,654 - +0.1
32,657 + -0.1
32,865 + EX28DRAFT_4365 0.21 +0.4
32,911 - EX28DRAFT_4365 0.27 +0.8
33,033 - EX28DRAFT_4365 0.43 +0.1
33,080 + EX28DRAFT_4365 0.50 -1.4
33,081 - EX28DRAFT_4365 0.50 +1.2
33,164 + EX28DRAFT_4365 0.61 -0.8
33,167 + EX28DRAFT_4365 0.61 -0.2
33,168 - EX28DRAFT_4365 0.62 +0.7
33,171 - EX28DRAFT_4365 0.62 +1.0
33,172 + EX28DRAFT_4365 0.62 -0.0
33,173 - EX28DRAFT_4365 0.62 -0.2
33,173 - EX28DRAFT_4365 0.62 +0.8
33,174 + EX28DRAFT_4365 0.62 -0.1
33,174 + EX28DRAFT_4365 0.62 +0.2
33,175 - EX28DRAFT_4365 0.62 -1.5
33,175 - EX28DRAFT_4365 0.62 +1.0
33,253 + EX28DRAFT_4365 0.73 +0.1
33,261 + EX28DRAFT_4365 0.74 -1.0
33,283 + EX28DRAFT_4365 0.77 +0.1
33,332 - EX28DRAFT_4365 0.84 +0.3
33,352 - EX28DRAFT_4365 0.86 -2.1
33,355 - EX28DRAFT_4365 0.87 +0.7
33,417 - +0.1
33,417 - +0.9
33,417 - +0.3
33,421 - +0.8
33,421 - +0.9
33,584 + EX28DRAFT_4366 0.28 +0.5
33,647 + EX28DRAFT_4366 0.42 +0.6
33,659 - EX28DRAFT_4366 0.44 +0.5
33,696 + EX28DRAFT_4366 0.52 -2.1
33,697 - EX28DRAFT_4366 0.52 +0.2
33,711 + EX28DRAFT_4366 0.55 -2.2
33,712 - EX28DRAFT_4366 0.56 -0.0
33,731 - EX28DRAFT_4366 0.60 -0.4
33,786 - EX28DRAFT_4366 0.71 -0.2
33,897 + +0.6
33,898 - +0.7
33,898 - +0.7
33,918 + -1.8
33,938 + +0.2
33,938 + -0.5
33,938 + +0.6
33,952 - +0.2
33,981 - +0.0
33,981 - +2.1
33,981 - +0.2
33,981 - -0.6
34,004 + +0.2
34,015 + +1.0
34,015 + +1.0
34,015 + +0.9
34,017 + -0.0
34,028 + -1.0
34,038 - +0.2
34,208 + EX28DRAFT_4367 0.33 +3.6
34,209 - EX28DRAFT_4367 0.33 +0.2
34,209 - EX28DRAFT_4367 0.33 -0.0
34,250 + EX28DRAFT_4367 0.40 +0.1
34,251 - EX28DRAFT_4367 0.40 -1.4
34,290 + EX28DRAFT_4367 0.47 -1.6
34,333 - EX28DRAFT_4367 0.54 -0.8
34,370 - EX28DRAFT_4367 0.60 -0.2
34,402 + EX28DRAFT_4367 0.66 -0.2
34,518 + EX28DRAFT_4367 0.85 +0.1
34,518 + EX28DRAFT_4367 0.85 +0.5
34,520 + EX28DRAFT_4367 0.85 -1.4
34,520 + EX28DRAFT_4367 0.85 +0.6
34,520 + EX28DRAFT_4367 0.85 +0.3
34,520 + EX28DRAFT_4367 0.85 +0.6
34,521 - EX28DRAFT_4367 0.85 +0.2
34,521 - EX28DRAFT_4367 0.85 -0.1
34,521 - EX28DRAFT_4367 0.85 +0.4
34,521 - EX28DRAFT_4367 0.85 +0.7
34,521 - EX28DRAFT_4367 0.85 -0.9
34,543 - EX28DRAFT_4367 0.89 -0.4
34,585 + +0.4
34,586 - +0.8
34,601 + +0.1
34,601 + +0.3
34,601 + +1.1
34,606 + +0.2
34,680 - -0.6
34,869 + EX28DRAFT_4368 0.30 +0.0
34,869 + EX28DRAFT_4368 0.30 +0.3
34,870 - EX28DRAFT_4368 0.30 -0.1
34,870 - EX28DRAFT_4368 0.30 -0.0

Or see this region's nucleotide sequence