Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4272

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4271 and EX28DRAFT_4272 are separated by 118 nucleotidesEX28DRAFT_4272 and EX28DRAFT_4273 are separated by 3 nucleotidesEX28DRAFT_4273 and EX28DRAFT_4274 are separated by 126 nucleotides EX28DRAFT_4271: EX28DRAFT_4271 - glycerol-3-phosphate acyltransferase (EC 2.3.1.15), at 74,588 to 77,008 _4271 EX28DRAFT_4272: EX28DRAFT_4272 - gluconate transporter, at 77,127 to 78,467 _4272 EX28DRAFT_4273: EX28DRAFT_4273 - carbohydrate kinase, thermoresistant glucokinase family, at 78,471 to 78,998 _4273 EX28DRAFT_4274: EX28DRAFT_4274 - transcriptional regulator, LacI family, at 79,125 to 80,177 _4274 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1at 76.723 kb on + strand, within EX28DRAFT_4271at 76.960 kb on + strandat 76.961 kb on - strandat 77.059 kb on + strandat 77.060 kb on - strandat 77.060 kb on - strandat 77.062 kb on + strandat 77.063 kb on - strandat 77.063 kb on - strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.064 kb on + strandat 77.065 kb on - strandat 77.114 kb on + strandat 77.115 kb on - strandat 77.141 kb on + strandat 77.141 kb on + strandat 77.142 kb on - strandat 77.207 kb on + strandat 77.306 kb on + strand, within EX28DRAFT_4272at 77.306 kb on + strand, within EX28DRAFT_4272at 77.335 kb on + strand, within EX28DRAFT_4272at 77.411 kb on + strand, within EX28DRAFT_4272at 77.552 kb on + strand, within EX28DRAFT_4272at 77.843 kb on + strand, within EX28DRAFT_4272at 77.844 kb on - strand, within EX28DRAFT_4272at 77.894 kb on + strand, within EX28DRAFT_4272at 78.360 kb on - strandat 78.360 kb on - strandat 78.392 kb on + strandat 78.450 kb on + strandat 78.462 kb on - strandat 78.472 kb on + strandat 78.473 kb on - strandat 78.482 kb on + strandat 78.482 kb on + strandat 78.483 kb on - strandat 78.486 kb on - strandat 78.673 kb on + strand, within EX28DRAFT_4273at 78.674 kb on - strand, within EX28DRAFT_4273at 78.674 kb on - strand, within EX28DRAFT_4273at 78.773 kb on + strand, within EX28DRAFT_4273at 78.968 kb on - strandat 78.987 kb on - strandat 79.130 kb on + strandat 79.131 kb on - strandat 79.158 kb on + strandat 79.233 kb on - strand, within EX28DRAFT_4274at 79.233 kb on - strand, within EX28DRAFT_4274at 79.453 kb on + strand, within EX28DRAFT_4274

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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76,723 + EX28DRAFT_4271 0.88 -0.8
76,960 + -0.2
76,961 - -0.3
77,059 + -0.5
77,060 - -0.8
77,060 - -0.1
77,062 + -0.0
77,063 - -0.5
77,063 - -0.6
77,064 + -0.4
77,064 + +0.6
77,064 + +0.2
77,064 + +0.4
77,064 + +0.0
77,064 + -1.1
77,064 + -1.0
77,065 - -0.6
77,114 + +0.3
77,115 - -0.4
77,141 + +0.3
77,141 + -0.6
77,142 - -0.2
77,207 + -0.7
77,306 + EX28DRAFT_4272 0.13 +0.6
77,306 + EX28DRAFT_4272 0.13 -0.9
77,335 + EX28DRAFT_4272 0.16 -0.3
77,411 + EX28DRAFT_4272 0.21 -1.2
77,552 + EX28DRAFT_4272 0.32 -0.6
77,843 + EX28DRAFT_4272 0.53 +0.1
77,844 - EX28DRAFT_4272 0.53 +0.4
77,894 + EX28DRAFT_4272 0.57 -0.1
78,360 - -0.3
78,360 - +0.2
78,392 + -0.0
78,450 + +0.2
78,462 - -0.1
78,472 + -0.7
78,473 - +1.1
78,482 + -0.3
78,482 + -0.4
78,483 - -0.2
78,486 - -0.5
78,673 + EX28DRAFT_4273 0.38 -0.8
78,674 - EX28DRAFT_4273 0.38 +0.3
78,674 - EX28DRAFT_4273 0.38 -0.8
78,773 + EX28DRAFT_4273 0.57 -0.7
78,968 - +0.2
78,987 - -0.7
79,130 + -0.3
79,131 - +0.3
79,158 + +0.3
79,233 - EX28DRAFT_4274 0.10 -0.6
79,233 - EX28DRAFT_4274 0.10 +0.3
79,453 + EX28DRAFT_4274 0.31 +0.2

Or see this region's nucleotide sequence