Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3937 and EX28DRAFT_3938 are separated by 293 nucleotides EX28DRAFT_3938 and EX28DRAFT_3939 are separated by 11 nucleotides
EX28DRAFT_3937: EX28DRAFT_3937 - Transcriptional regulators, at 147,012 to 147,962
_3937
EX28DRAFT_3938: EX28DRAFT_3938 - Phosphotransferase system cellobiose-specific component IIB, at 148,256 to 148,570
_3938
EX28DRAFT_3939: EX28DRAFT_3939 - PTS system, lactose/cellobiose family IIC component, at 148,582 to 149,907
_3939
Position (kb) 148
149 Strain fitness (log2 ratio) -2
-1
0
1 at 147.302 kb on + strand, within EX28DRAFT_3937 at 147.478 kb on + strand, within EX28DRAFT_3937 at 147.479 kb on - strand, within EX28DRAFT_3937 at 147.482 kb on + strand, within EX28DRAFT_3937 at 147.482 kb on + strand, within EX28DRAFT_3937 at 147.483 kb on - strand, within EX28DRAFT_3937 at 147.483 kb on - strand, within EX28DRAFT_3937 at 147.528 kb on - strand, within EX28DRAFT_3937 at 147.533 kb on + strand, within EX28DRAFT_3937 at 147.879 kb on + strand at 147.942 kb on + strand at 147.942 kb on + strand at 147.943 kb on - strand at 147.943 kb on - strand at 147.982 kb on + strand at 147.982 kb on + strand at 147.982 kb on + strand at 147.983 kb on - strand at 147.983 kb on - strand at 147.983 kb on - strand at 148.024 kb on - strand at 148.042 kb on - strand at 148.145 kb on + strand at 148.240 kb on + strand at 148.267 kb on + strand at 148.267 kb on + strand at 148.267 kb on + strand at 148.365 kb on - strand, within EX28DRAFT_3938 at 148.401 kb on - strand, within EX28DRAFT_3938 at 148.433 kb on + strand, within EX28DRAFT_3938 at 148.433 kb on + strand, within EX28DRAFT_3938 at 148.530 kb on + strand, within EX28DRAFT_3938 at 148.531 kb on - strand, within EX28DRAFT_3938 at 148.539 kb on - strand at 148.539 kb on - strand at 148.539 kb on - strand at 148.568 kb on + strand at 148.594 kb on + strand at 148.594 kb on + strand at 148.663 kb on + strand at 148.707 kb on + strand at 148.725 kb on + strand, within EX28DRAFT_3939 at 148.993 kb on + strand, within EX28DRAFT_3939 at 149.038 kb on + strand, within EX28DRAFT_3939 at 149.038 kb on + strand, within EX28DRAFT_3939 at 149.054 kb on - strand, within EX28DRAFT_3939 at 149.054 kb on - strand, within EX28DRAFT_3939 at 149.446 kb on + strand, within EX28DRAFT_3939 at 149.446 kb on + strand, within EX28DRAFT_3939 at 149.446 kb on + strand, within EX28DRAFT_3939 at 149.446 kb on + strand, within EX28DRAFT_3939 at 149.447 kb on - strand, within EX28DRAFT_3939 at 149.465 kb on + strand, within EX28DRAFT_3939
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 147,302 + EX28DRAFT_3937 0.30 -0.8 147,478 + EX28DRAFT_3937 0.49 -0.1 147,479 - EX28DRAFT_3937 0.49 +0.7 147,482 + EX28DRAFT_3937 0.49 -0.0 147,482 + EX28DRAFT_3937 0.49 +0.3 147,483 - EX28DRAFT_3937 0.50 -0.5 147,483 - EX28DRAFT_3937 0.50 +0.3 147,528 - EX28DRAFT_3937 0.54 +0.1 147,533 + EX28DRAFT_3937 0.55 -0.9 147,879 + +0.1 147,942 + -0.2 147,942 + +0.2 147,943 - -0.2 147,943 - +0.2 147,982 + -0.0 147,982 + +0.0 147,982 + -1.7 147,983 - +0.5 147,983 - -0.1 147,983 - -0.1 148,024 - -1.3 148,042 - +0.1 148,145 + +0.2 148,240 + -0.0 148,267 + +1.2 148,267 + +0.9 148,267 + -2.0 148,365 - EX28DRAFT_3938 0.35 -0.5 148,401 - EX28DRAFT_3938 0.46 +1.5 148,433 + EX28DRAFT_3938 0.56 +1.0 148,433 + EX28DRAFT_3938 0.56 +0.7 148,530 + EX28DRAFT_3938 0.87 +0.2 148,531 - EX28DRAFT_3938 0.87 +0.2 148,539 - -0.2 148,539 - -1.0 148,539 - +0.1 148,568 + -0.0 148,594 + -0.9 148,594 + +0.5 148,663 + -0.0 148,707 + +0.7 148,725 + EX28DRAFT_3939 0.11 -0.7 148,993 + EX28DRAFT_3939 0.31 -0.0 149,038 + EX28DRAFT_3939 0.34 +0.3 149,038 + EX28DRAFT_3939 0.34 -0.6 149,054 - EX28DRAFT_3939 0.36 -0.3 149,054 - EX28DRAFT_3939 0.36 +0.6 149,446 + EX28DRAFT_3939 0.65 -1.3 149,446 + EX28DRAFT_3939 0.65 +0.0 149,446 + EX28DRAFT_3939 0.65 +0.0 149,446 + EX28DRAFT_3939 0.65 +0.3 149,447 - EX28DRAFT_3939 0.65 +0.3 149,465 + EX28DRAFT_3939 0.67 -0.4
Or see this region's nucleotide sequence