Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3567

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3565 and EX28DRAFT_3566 are separated by 67 nucleotidesEX28DRAFT_3566 and EX28DRAFT_3567 overlap by 10 nucleotidesEX28DRAFT_3567 and EX28DRAFT_3568 are separated by 409 nucleotides EX28DRAFT_3565: EX28DRAFT_3565 - transcriptional regulator, TetR family, at 228,084 to 228,725 _3565 EX28DRAFT_3566: EX28DRAFT_3566 - Uncharacterized conserved protein, at 228,793 to 229,266 _3566 EX28DRAFT_3567: EX28DRAFT_3567 - Uncharacterized conserved protein, at 229,257 to 230,033 _3567 EX28DRAFT_3568: EX28DRAFT_3568 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 230,443 to 231,180 _3568 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1at 228.353 kb on + strand, within EX28DRAFT_3565at 228.397 kb on + strand, within EX28DRAFT_3565at 228.398 kb on - strand, within EX28DRAFT_3565at 228.398 kb on - strand, within EX28DRAFT_3565at 228.549 kb on - strand, within EX28DRAFT_3565at 228.554 kb on + strand, within EX28DRAFT_3565at 228.631 kb on + strand, within EX28DRAFT_3565at 228.783 kb on - strandat 228.783 kb on - strandat 228.791 kb on + strandat 228.792 kb on - strandat 228.792 kb on - strandat 229.074 kb on + strand, within EX28DRAFT_3566at 229.095 kb on + strand, within EX28DRAFT_3566at 229.296 kb on + strandat 229.299 kb on + strandat 229.299 kb on + strandat 229.373 kb on + strand, within EX28DRAFT_3567at 229.374 kb on - strand, within EX28DRAFT_3567at 229.527 kb on - strand, within EX28DRAFT_3567at 229.570 kb on + strand, within EX28DRAFT_3567at 229.570 kb on + strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.571 kb on - strand, within EX28DRAFT_3567at 229.626 kb on - strand, within EX28DRAFT_3567at 229.634 kb on + strand, within EX28DRAFT_3567at 229.660 kb on - strand, within EX28DRAFT_3567at 229.660 kb on - strand, within EX28DRAFT_3567at 229.692 kb on + strand, within EX28DRAFT_3567at 229.693 kb on - strand, within EX28DRAFT_3567at 229.745 kb on + strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.746 kb on - strand, within EX28DRAFT_3567at 229.881 kb on - strand, within EX28DRAFT_3567at 229.988 kb on + strandat 229.989 kb on - strandat 229.992 kb on + strandat 229.993 kb on - strandat 229.993 kb on - strandat 230.003 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.035 kb on + strandat 230.036 kb on - strandat 230.036 kb on - strandat 230.081 kb on + strandat 230.152 kb on + strandat 230.153 kb on - strandat 230.198 kb on - strandat 230.319 kb on + strandat 230.330 kb on + strandat 230.350 kb on + strandat 230.351 kb on - strandat 230.388 kb on + strandat 230.404 kb on - strandat 230.442 kb on + strandat 230.442 kb on + strandat 230.442 kb on + strandat 230.442 kb on + strandat 230.442 kb on + strandat 230.443 kb on - strandat 230.443 kb on - strandat 230.443 kb on - strandat 230.443 kb on - strandat 230.466 kb on + strandat 230.467 kb on - strandat 230.551 kb on + strand, within EX28DRAFT_3568at 230.551 kb on + strand, within EX28DRAFT_3568at 230.574 kb on - strand, within EX28DRAFT_3568at 230.741 kb on + strand, within EX28DRAFT_3568at 230.741 kb on + strand, within EX28DRAFT_3568at 230.742 kb on - strand, within EX28DRAFT_3568at 230.818 kb on - strand, within EX28DRAFT_3568at 230.924 kb on + strand, within EX28DRAFT_3568at 230.936 kb on + strand, within EX28DRAFT_3568at 230.936 kb on + strand, within EX28DRAFT_3568at 230.937 kb on - strand, within EX28DRAFT_3568at 230.940 kb on + strand, within EX28DRAFT_3568at 230.941 kb on - strand, within EX28DRAFT_3568at 230.988 kb on + strand, within EX28DRAFT_3568at 230.988 kb on + strand, within EX28DRAFT_3568

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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228,353 + EX28DRAFT_3565 0.42 +0.3
228,397 + EX28DRAFT_3565 0.49 +0.3
228,398 - EX28DRAFT_3565 0.49 +1.7
228,398 - EX28DRAFT_3565 0.49 -0.4
228,549 - EX28DRAFT_3565 0.72 -1.7
228,554 + EX28DRAFT_3565 0.73 -0.1
228,631 + EX28DRAFT_3565 0.85 -0.0
228,783 - +0.9
228,783 - +0.3
228,791 + -0.1
228,792 - -0.1
228,792 - -1.1
229,074 + EX28DRAFT_3566 0.59 -1.2
229,095 + EX28DRAFT_3566 0.64 -1.3
229,296 + -0.1
229,299 + +0.0
229,299 + +0.4
229,373 + EX28DRAFT_3567 0.15 +0.0
229,374 - EX28DRAFT_3567 0.15 -0.2
229,527 - EX28DRAFT_3567 0.35 +0.2
229,570 + EX28DRAFT_3567 0.40 +0.1
229,570 + EX28DRAFT_3567 0.40 +0.2
229,571 - EX28DRAFT_3567 0.40 -0.0
229,571 - EX28DRAFT_3567 0.40 +0.9
229,571 - EX28DRAFT_3567 0.40 +0.1
229,571 - EX28DRAFT_3567 0.40 +1.4
229,571 - EX28DRAFT_3567 0.40 +0.4
229,571 - EX28DRAFT_3567 0.40 +0.9
229,626 - EX28DRAFT_3567 0.47 +0.3
229,634 + EX28DRAFT_3567 0.49 +0.1
229,660 - EX28DRAFT_3567 0.52 -0.2
229,660 - EX28DRAFT_3567 0.52 +0.5
229,692 + EX28DRAFT_3567 0.56 +0.4
229,693 - EX28DRAFT_3567 0.56 +0.6
229,745 + EX28DRAFT_3567 0.63 +0.7
229,746 - EX28DRAFT_3567 0.63 +0.9
229,746 - EX28DRAFT_3567 0.63 +0.5
229,746 - EX28DRAFT_3567 0.63 +0.1
229,881 - EX28DRAFT_3567 0.80 -0.3
229,988 + -0.0
229,989 - -0.1
229,992 + +0.3
229,993 - -0.2
229,993 - -2.4
230,003 + -0.4
230,035 + -0.9
230,035 + +1.2
230,035 + +0.8
230,035 + -0.5
230,035 + +1.7
230,036 - +0.9
230,036 - -2.6
230,081 + +0.0
230,152 + -1.1
230,153 - +0.3
230,198 - +0.2
230,319 + -0.1
230,330 + +0.3
230,350 + -2.4
230,351 - +0.4
230,388 + +0.3
230,404 - -0.1
230,442 + -0.6
230,442 + -0.2
230,442 + -0.5
230,442 + +0.5
230,442 + -0.8
230,443 - +0.7
230,443 - -1.1
230,443 - -0.1
230,443 - +0.3
230,466 + -0.3
230,467 - +0.4
230,551 + EX28DRAFT_3568 0.15 -1.3
230,551 + EX28DRAFT_3568 0.15 +0.1
230,574 - EX28DRAFT_3568 0.18 +0.1
230,741 + EX28DRAFT_3568 0.40 +0.6
230,741 + EX28DRAFT_3568 0.40 -1.0
230,742 - EX28DRAFT_3568 0.41 -0.2
230,818 - EX28DRAFT_3568 0.51 +1.1
230,924 + EX28DRAFT_3568 0.65 -3.2
230,936 + EX28DRAFT_3568 0.67 -0.7
230,936 + EX28DRAFT_3568 0.67 +1.0
230,937 - EX28DRAFT_3568 0.67 -0.8
230,940 + EX28DRAFT_3568 0.67 -1.1
230,941 - EX28DRAFT_3568 0.67 -1.6
230,988 + EX28DRAFT_3568 0.74 +0.0
230,988 + EX28DRAFT_3568 0.74 -0.2

Or see this region's nucleotide sequence