Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3337

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3336 and EX28DRAFT_3337 are separated by 308 nucleotidesEX28DRAFT_3337 and EX28DRAFT_3338 are separated by 24 nucleotides EX28DRAFT_3336: EX28DRAFT_3336 - aspartate ammonia-lyase, at 6,482 to 7,918 _3336 EX28DRAFT_3337: EX28DRAFT_3337 - Protein affecting phage T7 exclusion by the F plasmid, at 8,227 to 8,718 _3337 EX28DRAFT_3338: EX28DRAFT_3338 - Amino acid transporters, at 8,743 to 9,993 _3338 Position (kb) 8 9Strain fitness (log2 ratio) -1 0 1 2at 7.292 kb on + strand, within EX28DRAFT_3336at 7.292 kb on + strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.450 kb on - strand, within EX28DRAFT_3336at 7.450 kb on - strand, within EX28DRAFT_3336at 7.527 kb on + strand, within EX28DRAFT_3336at 7.580 kb on + strand, within EX28DRAFT_3336at 7.591 kb on + strand, within EX28DRAFT_3336at 7.592 kb on - strand, within EX28DRAFT_3336at 7.627 kb on - strand, within EX28DRAFT_3336at 7.816 kb on - strandat 7.851 kb on + strandat 7.851 kb on + strandat 7.851 kb on + strandat 7.852 kb on - strandat 7.855 kb on - strandat 7.900 kb on + strandat 7.952 kb on - strandat 7.966 kb on - strandat 7.970 kb on - strandat 7.970 kb on - strandat 8.033 kb on + strandat 8.093 kb on + strandat 8.097 kb on + strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.397 kb on + strand, within EX28DRAFT_3337at 8.423 kb on + strand, within EX28DRAFT_3337at 8.665 kb on + strand, within EX28DRAFT_3337at 8.674 kb on - strandat 8.697 kb on - strandat 8.813 kb on + strandat 8.884 kb on - strand, within EX28DRAFT_3338at 8.884 kb on - strand, within EX28DRAFT_3338at 8.885 kb on + strand, within EX28DRAFT_3338at 8.930 kb on + strand, within EX28DRAFT_3338at 8.930 kb on + strand, within EX28DRAFT_3338at 8.930 kb on + strand, within EX28DRAFT_3338at 8.930 kb on + strand, within EX28DRAFT_3338at 8.979 kb on + strand, within EX28DRAFT_3338at 8.980 kb on - strand, within EX28DRAFT_3338at 8.993 kb on + strand, within EX28DRAFT_3338at 8.994 kb on - strand, within EX28DRAFT_3338at 8.997 kb on + strand, within EX28DRAFT_3338at 9.135 kb on + strand, within EX28DRAFT_3338at 9.138 kb on - strand, within EX28DRAFT_3338at 9.138 kb on - strand, within EX28DRAFT_3338at 9.138 kb on - strand, within EX28DRAFT_3338at 9.274 kb on + strand, within EX28DRAFT_3338at 9.275 kb on - strand, within EX28DRAFT_3338at 9.299 kb on + strand, within EX28DRAFT_3338at 9.299 kb on + strand, within EX28DRAFT_3338at 9.300 kb on - strand, within EX28DRAFT_3338at 9.325 kb on + strand, within EX28DRAFT_3338at 9.326 kb on - strand, within EX28DRAFT_3338at 9.326 kb on - strand, within EX28DRAFT_3338at 9.629 kb on - strand, within EX28DRAFT_3338at 9.629 kb on - strand, within EX28DRAFT_3338

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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7,292 + EX28DRAFT_3336 0.56 +0.3
7,292 + EX28DRAFT_3336 0.56 -0.1
7,293 - EX28DRAFT_3336 0.56 +0.7
7,293 - EX28DRAFT_3336 0.56 -0.1
7,449 + EX28DRAFT_3336 0.67 -0.4
7,449 + EX28DRAFT_3336 0.67 -0.0
7,449 + EX28DRAFT_3336 0.67 +0.9
7,450 - EX28DRAFT_3336 0.67 -1.2
7,450 - EX28DRAFT_3336 0.67 -1.2
7,527 + EX28DRAFT_3336 0.73 -0.3
7,580 + EX28DRAFT_3336 0.76 -0.5
7,591 + EX28DRAFT_3336 0.77 -0.4
7,592 - EX28DRAFT_3336 0.77 +1.6
7,627 - EX28DRAFT_3336 0.80 +0.5
7,816 - +1.9
7,851 + +1.2
7,851 + +2.2
7,851 + -1.2
7,852 - -0.8
7,855 - +1.0
7,900 + -0.1
7,952 - -0.7
7,966 - -0.6
7,970 - +0.2
7,970 - -0.1
8,033 + +0.3
8,093 + +0.6
8,097 + -0.1
8,098 - -0.4
8,098 - +1.5
8,098 - +0.7
8,098 - +0.9
8,397 + EX28DRAFT_3337 0.35 +1.6
8,423 + EX28DRAFT_3337 0.40 +0.2
8,665 + EX28DRAFT_3337 0.89 +1.0
8,674 - +0.5
8,697 - +0.3
8,813 + +0.6
8,884 - EX28DRAFT_3338 0.11 +0.4
8,884 - EX28DRAFT_3338 0.11 +0.4
8,885 + EX28DRAFT_3338 0.11 -0.7
8,930 + EX28DRAFT_3338 0.15 +0.9
8,930 + EX28DRAFT_3338 0.15 -0.0
8,930 + EX28DRAFT_3338 0.15 +1.4
8,930 + EX28DRAFT_3338 0.15 +1.6
8,979 + EX28DRAFT_3338 0.19 +0.0
8,980 - EX28DRAFT_3338 0.19 -0.8
8,993 + EX28DRAFT_3338 0.20 +2.0
8,994 - EX28DRAFT_3338 0.20 -1.5
8,997 + EX28DRAFT_3338 0.20 -0.9
9,135 + EX28DRAFT_3338 0.31 -0.2
9,138 - EX28DRAFT_3338 0.32 +0.9
9,138 - EX28DRAFT_3338 0.32 +0.6
9,138 - EX28DRAFT_3338 0.32 -0.1
9,274 + EX28DRAFT_3338 0.42 -0.3
9,275 - EX28DRAFT_3338 0.43 +0.2
9,299 + EX28DRAFT_3338 0.44 +0.6
9,299 + EX28DRAFT_3338 0.44 +0.5
9,300 - EX28DRAFT_3338 0.45 +0.3
9,325 + EX28DRAFT_3338 0.47 +0.3
9,326 - EX28DRAFT_3338 0.47 +0.5
9,326 - EX28DRAFT_3338 0.47 +0.4
9,629 - EX28DRAFT_3338 0.71 +0.2
9,629 - EX28DRAFT_3338 0.71 +0.0

Or see this region's nucleotide sequence