Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3152

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3151 and EX28DRAFT_3152 are separated by 178 nucleotidesEX28DRAFT_3152 and EX28DRAFT_3153 are separated by 106 nucleotides EX28DRAFT_3151: EX28DRAFT_3151 - Sugar (pentulose and hexulose) kinases, at 451,732 to 453,327 _3151 EX28DRAFT_3152: EX28DRAFT_3152 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 453,506 to 455,527 _3152 EX28DRAFT_3153: EX28DRAFT_3153 - 16S RNA G1207 methylase RsmC, at 455,634 to 456,770 _3153 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 452.722 kb on + strand, within EX28DRAFT_3151at 452.723 kb on - strand, within EX28DRAFT_3151at 452.783 kb on + strand, within EX28DRAFT_3151at 452.784 kb on - strand, within EX28DRAFT_3151at 452.805 kb on + strand, within EX28DRAFT_3151at 452.806 kb on - strand, within EX28DRAFT_3151at 452.816 kb on - strand, within EX28DRAFT_3151at 452.835 kb on + strand, within EX28DRAFT_3151at 452.835 kb on + strand, within EX28DRAFT_3151at 453.056 kb on + strand, within EX28DRAFT_3151at 453.194 kb on - strandat 453.226 kb on + strandat 453.227 kb on - strandat 453.341 kb on + strandat 453.341 kb on + strandat 453.342 kb on - strandat 453.342 kb on - strandat 453.342 kb on - strandat 453.396 kb on + strandat 453.461 kb on + strandat 453.461 kb on + strandat 453.490 kb on + strandat 453.505 kb on + strandat 453.505 kb on + strandat 453.506 kb on - strandat 453.506 kb on - strandat 453.506 kb on - strandat 453.638 kb on + strandat 453.638 kb on + strandat 453.639 kb on - strandat 453.639 kb on - strandat 453.837 kb on - strand, within EX28DRAFT_3152at 454.007 kb on + strand, within EX28DRAFT_3152at 454.070 kb on + strand, within EX28DRAFT_3152at 454.138 kb on + strand, within EX28DRAFT_3152at 454.785 kb on - strand, within EX28DRAFT_3152at 454.822 kb on + strand, within EX28DRAFT_3152at 454.843 kb on + strand, within EX28DRAFT_3152at 454.958 kb on + strand, within EX28DRAFT_3152at 454.958 kb on + strand, within EX28DRAFT_3152at 454.958 kb on + strand, within EX28DRAFT_3152at 454.958 kb on + strand, within EX28DRAFT_3152at 454.958 kb on + strand, within EX28DRAFT_3152at 454.968 kb on + strand, within EX28DRAFT_3152at 454.968 kb on + strand, within EX28DRAFT_3152at 454.968 kb on + strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 454.969 kb on - strand, within EX28DRAFT_3152at 455.045 kb on + strand, within EX28DRAFT_3152at 455.045 kb on + strand, within EX28DRAFT_3152at 455.045 kb on + strand, within EX28DRAFT_3152at 455.045 kb on + strand, within EX28DRAFT_3152at 455.046 kb on - strand, within EX28DRAFT_3152at 455.046 kb on - strand, within EX28DRAFT_3152at 455.049 kb on + strand, within EX28DRAFT_3152at 455.050 kb on - strand, within EX28DRAFT_3152at 455.197 kb on + strand, within EX28DRAFT_3152at 455.298 kb on - strand, within EX28DRAFT_3152at 455.376 kb on + strandat 455.376 kb on + strandat 455.376 kb on + strandat 455.376 kb on + strandat 455.626 kb on + strandat 455.626 kb on + strandat 455.627 kb on - strandat 455.761 kb on + strand, within EX28DRAFT_3153at 455.761 kb on + strand, within EX28DRAFT_3153at 456.237 kb on - strand, within EX28DRAFT_3153at 456.242 kb on + strand, within EX28DRAFT_3153at 456.242 kb on + strand, within EX28DRAFT_3153at 456.242 kb on + strand, within EX28DRAFT_3153at 456.243 kb on - strand, within EX28DRAFT_3153at 456.243 kb on - strand, within EX28DRAFT_3153

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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452,722 + EX28DRAFT_3151 0.62 +0.8
452,723 - EX28DRAFT_3151 0.62 +0.7
452,783 + EX28DRAFT_3151 0.66 +0.5
452,784 - EX28DRAFT_3151 0.66 +0.2
452,805 + EX28DRAFT_3151 0.67 +0.2
452,806 - EX28DRAFT_3151 0.67 -0.1
452,816 - EX28DRAFT_3151 0.68 -1.7
452,835 + EX28DRAFT_3151 0.69 +0.6
452,835 + EX28DRAFT_3151 0.69 -0.9
453,056 + EX28DRAFT_3151 0.83 +0.6
453,194 - -0.4
453,226 + +0.6
453,227 - +0.2
453,341 + -0.1
453,341 + +0.8
453,342 - -2.1
453,342 - -0.7
453,342 - -0.1
453,396 + +1.3
453,461 + -2.0
453,461 + -1.8
453,490 + +0.3
453,505 + +0.4
453,505 + -1.3
453,506 - +0.0
453,506 - -0.3
453,506 - -0.4
453,638 + -0.2
453,638 + -0.2
453,639 - -0.4
453,639 - -0.1
453,837 - EX28DRAFT_3152 0.16 +0.5
454,007 + EX28DRAFT_3152 0.25 +0.0
454,070 + EX28DRAFT_3152 0.28 -0.4
454,138 + EX28DRAFT_3152 0.31 -4.2
454,785 - EX28DRAFT_3152 0.63 -0.5
454,822 + EX28DRAFT_3152 0.65 +0.2
454,843 + EX28DRAFT_3152 0.66 -0.0
454,958 + EX28DRAFT_3152 0.72 +0.1
454,958 + EX28DRAFT_3152 0.72 +1.6
454,958 + EX28DRAFT_3152 0.72 -3.6
454,958 + EX28DRAFT_3152 0.72 -0.1
454,958 + EX28DRAFT_3152 0.72 +0.4
454,968 + EX28DRAFT_3152 0.72 -0.1
454,968 + EX28DRAFT_3152 0.72 +0.5
454,968 + EX28DRAFT_3152 0.72 -1.1
454,969 - EX28DRAFT_3152 0.72 +0.7
454,969 - EX28DRAFT_3152 0.72 -0.8
454,969 - EX28DRAFT_3152 0.72 -0.0
454,969 - EX28DRAFT_3152 0.72 +0.8
454,969 - EX28DRAFT_3152 0.72 +0.1
454,969 - EX28DRAFT_3152 0.72 +0.3
455,045 + EX28DRAFT_3152 0.76 -0.4
455,045 + EX28DRAFT_3152 0.76 -1.1
455,045 + EX28DRAFT_3152 0.76 -0.1
455,045 + EX28DRAFT_3152 0.76 +0.0
455,046 - EX28DRAFT_3152 0.76 -0.7
455,046 - EX28DRAFT_3152 0.76 -1.8
455,049 + EX28DRAFT_3152 0.76 -0.1
455,050 - EX28DRAFT_3152 0.76 -1.5
455,197 + EX28DRAFT_3152 0.84 +1.6
455,298 - EX28DRAFT_3152 0.89 -0.4
455,376 + -1.0
455,376 + +0.9
455,376 + +0.5
455,376 + -0.3
455,626 + +0.9
455,626 + +0.4
455,627 - -0.2
455,761 + EX28DRAFT_3153 0.11 -0.1
455,761 + EX28DRAFT_3153 0.11 -0.0
456,237 - EX28DRAFT_3153 0.53 +0.4
456,242 + EX28DRAFT_3153 0.53 -1.4
456,242 + EX28DRAFT_3153 0.53 +1.2
456,242 + EX28DRAFT_3153 0.53 -0.2
456,243 - EX28DRAFT_3153 0.54 -0.4
456,243 - EX28DRAFT_3153 0.54 +0.1

Or see this region's nucleotide sequence