Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3119

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3117 and EX28DRAFT_3118 overlap by 8 nucleotidesEX28DRAFT_3118 and EX28DRAFT_3119 are separated by 5 nucleotidesEX28DRAFT_3119 and EX28DRAFT_3120 overlap by 4 nucleotidesEX28DRAFT_3120 and EX28DRAFT_3121 are separated by 130 nucleotides EX28DRAFT_3117: EX28DRAFT_3117 - phage tail protein, P2 protein I family, at 424,313 to 424,921 _3117 EX28DRAFT_3118: EX28DRAFT_3118 - Phage-related baseplate assembly protein, at 424,914 to 425,822 _3118 EX28DRAFT_3119: EX28DRAFT_3119 - Phage baseplate assembly protein W, at 425,828 to 426,178 _3119 EX28DRAFT_3120: EX28DRAFT_3120 - phage baseplate assembly protein V, at 426,175 to 426,798 _3120 EX28DRAFT_3121: EX28DRAFT_3121 - P2 phage tail completion protein R (GpR), at 426,929 to 427,396 _3121 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1 2at 424.980 kb on + strandat 424.981 kb on - strandat 424.981 kb on - strandat 424.981 kb on - strandat 425.044 kb on + strand, within EX28DRAFT_3118at 425.044 kb on + strand, within EX28DRAFT_3118at 425.045 kb on - strand, within EX28DRAFT_3118at 425.093 kb on + strand, within EX28DRAFT_3118at 425.095 kb on + strand, within EX28DRAFT_3118at 425.096 kb on - strand, within EX28DRAFT_3118at 425.096 kb on - strand, within EX28DRAFT_3118at 425.158 kb on + strand, within EX28DRAFT_3118at 425.158 kb on + strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.159 kb on - strand, within EX28DRAFT_3118at 425.185 kb on - strand, within EX28DRAFT_3118at 425.243 kb on + strand, within EX28DRAFT_3118at 425.243 kb on + strand, within EX28DRAFT_3118at 425.244 kb on - strand, within EX28DRAFT_3118at 425.392 kb on + strand, within EX28DRAFT_3118at 425.495 kb on + strand, within EX28DRAFT_3118at 425.496 kb on - strand, within EX28DRAFT_3118at 425.535 kb on - strand, within EX28DRAFT_3118at 425.817 kb on - strandat 425.848 kb on + strandat 425.848 kb on + strandat 425.895 kb on + strand, within EX28DRAFT_3119at 425.895 kb on + strand, within EX28DRAFT_3119at 425.896 kb on - strand, within EX28DRAFT_3119at 425.896 kb on - strand, within EX28DRAFT_3119at 425.896 kb on - strand, within EX28DRAFT_3119at 425.896 kb on - strand, within EX28DRAFT_3119at 425.896 kb on - strand, within EX28DRAFT_3119at 426.189 kb on + strandat 426.324 kb on + strand, within EX28DRAFT_3120at 426.324 kb on + strand, within EX28DRAFT_3120at 426.324 kb on + strand, within EX28DRAFT_3120at 426.325 kb on - strand, within EX28DRAFT_3120at 426.328 kb on + strand, within EX28DRAFT_3120at 426.329 kb on - strand, within EX28DRAFT_3120at 426.357 kb on + strand, within EX28DRAFT_3120at 426.444 kb on + strand, within EX28DRAFT_3120at 426.810 kb on + strandat 426.810 kb on + strandat 426.811 kb on - strandat 426.877 kb on + strandat 426.878 kb on - strandat 426.967 kb on - strandat 427.017 kb on + strand, within EX28DRAFT_3121at 427.018 kb on - strand, within EX28DRAFT_3121at 427.157 kb on - strand, within EX28DRAFT_3121

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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424,980 + -0.2
424,981 - -0.4
424,981 - +0.8
424,981 - -1.8
425,044 + EX28DRAFT_3118 0.14 -0.4
425,044 + EX28DRAFT_3118 0.14 +0.1
425,045 - EX28DRAFT_3118 0.14 -1.0
425,093 + EX28DRAFT_3118 0.20 -0.2
425,095 + EX28DRAFT_3118 0.20 -0.1
425,096 - EX28DRAFT_3118 0.20 +0.9
425,096 - EX28DRAFT_3118 0.20 -1.7
425,158 + EX28DRAFT_3118 0.27 +0.2
425,158 + EX28DRAFT_3118 0.27 +0.0
425,159 - EX28DRAFT_3118 0.27 +2.6
425,159 - EX28DRAFT_3118 0.27 +0.4
425,159 - EX28DRAFT_3118 0.27 -0.1
425,185 - EX28DRAFT_3118 0.30 +0.2
425,243 + EX28DRAFT_3118 0.36 +0.2
425,243 + EX28DRAFT_3118 0.36 -0.1
425,244 - EX28DRAFT_3118 0.36 +1.0
425,392 + EX28DRAFT_3118 0.53 -1.7
425,495 + EX28DRAFT_3118 0.64 +0.4
425,496 - EX28DRAFT_3118 0.64 -0.5
425,535 - EX28DRAFT_3118 0.68 +0.8
425,817 - +0.6
425,848 + +0.2
425,848 + +0.2
425,895 + EX28DRAFT_3119 0.19 +0.7
425,895 + EX28DRAFT_3119 0.19 +0.3
425,896 - EX28DRAFT_3119 0.19 +0.7
425,896 - EX28DRAFT_3119 0.19 +0.3
425,896 - EX28DRAFT_3119 0.19 -0.1
425,896 - EX28DRAFT_3119 0.19 +0.7
425,896 - EX28DRAFT_3119 0.19 +0.5
426,189 + +0.4
426,324 + EX28DRAFT_3120 0.24 +0.3
426,324 + EX28DRAFT_3120 0.24 -1.1
426,324 + EX28DRAFT_3120 0.24 -0.9
426,325 - EX28DRAFT_3120 0.24 -0.3
426,328 + EX28DRAFT_3120 0.25 +0.3
426,329 - EX28DRAFT_3120 0.25 -1.7
426,357 + EX28DRAFT_3120 0.29 +0.4
426,444 + EX28DRAFT_3120 0.43 -1.7
426,810 + -1.3
426,810 + +0.2
426,811 - -0.0
426,877 + -1.5
426,878 - -0.4
426,967 - -0.5
427,017 + EX28DRAFT_3121 0.19 +0.1
427,018 - EX28DRAFT_3121 0.19 +0.0
427,157 - EX28DRAFT_3121 0.49 -0.9

Or see this region's nucleotide sequence