Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2910

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2909 and EX28DRAFT_2910 overlap by 8 nucleotidesEX28DRAFT_2910 and EX28DRAFT_2911 are separated by 95 nucleotidesEX28DRAFT_2911 and EX28DRAFT_2912 are separated by 118 nucleotidesEX28DRAFT_2912 and EX28DRAFT_2913 are separated by 244 nucleotides EX28DRAFT_2909: EX28DRAFT_2909 - Major Facilitator Superfamily, at 219,741 to 220,934 _2909 EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086 _2910 EX28DRAFT_2911: EX28DRAFT_2911 - RNA, at 223,182 to 223,267 _2911 EX28DRAFT_2912: EX28DRAFT_2912 - RNA, at 223,386 to 223,466 _2912 EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727 _2913 Position (kb) 220 221 222 223 224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 220.009 kb on + strand, within EX28DRAFT_2909at 220.010 kb on - strand, within EX28DRAFT_2909at 220.257 kb on - strand, within EX28DRAFT_2909at 220.341 kb on - strand, within EX28DRAFT_2909at 220.374 kb on + strand, within EX28DRAFT_2909at 220.746 kb on - strand, within EX28DRAFT_2909at 220.746 kb on - strand, within EX28DRAFT_2909at 220.750 kb on + strand, within EX28DRAFT_2909at 220.750 kb on + strand, within EX28DRAFT_2909at 220.751 kb on - strand, within EX28DRAFT_2909at 220.751 kb on - strand, within EX28DRAFT_2909at 220.914 kb on - strandat 221.069 kb on + strandat 221.069 kb on + strandat 221.070 kb on - strandat 221.070 kb on - strandat 221.092 kb on - strandat 221.267 kb on - strand, within EX28DRAFT_2910at 221.296 kb on - strand, within EX28DRAFT_2910at 221.296 kb on - strand, within EX28DRAFT_2910at 221.516 kb on - strand, within EX28DRAFT_2910at 221.639 kb on + strand, within EX28DRAFT_2910at 221.639 kb on + strand, within EX28DRAFT_2910at 221.732 kb on + strand, within EX28DRAFT_2910at 221.732 kb on + strand, within EX28DRAFT_2910at 221.733 kb on - strand, within EX28DRAFT_2910at 221.782 kb on + strand, within EX28DRAFT_2910at 221.782 kb on + strand, within EX28DRAFT_2910at 221.783 kb on - strand, within EX28DRAFT_2910at 221.783 kb on - strand, within EX28DRAFT_2910at 222.165 kb on + strand, within EX28DRAFT_2910at 222.178 kb on - strand, within EX28DRAFT_2910at 222.227 kb on + strand, within EX28DRAFT_2910at 222.335 kb on + strand, within EX28DRAFT_2910at 222.336 kb on - strand, within EX28DRAFT_2910at 222.336 kb on - strand, within EX28DRAFT_2910at 222.369 kb on + strand, within EX28DRAFT_2910at 222.511 kb on - strand, within EX28DRAFT_2910at 222.511 kb on - strand, within EX28DRAFT_2910at 222.541 kb on - strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.597 kb on + strand, within EX28DRAFT_2910at 222.598 kb on - strand, within EX28DRAFT_2910at 222.656 kb on + strand, within EX28DRAFT_2910at 222.657 kb on - strand, within EX28DRAFT_2910at 222.735 kb on - strand, within EX28DRAFT_2910at 222.765 kb on + strand, within EX28DRAFT_2910at 222.766 kb on - strand, within EX28DRAFT_2910at 222.814 kb on + strand, within EX28DRAFT_2910at 222.891 kb on - strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.915 kb on - strandat 222.946 kb on + strandat 222.968 kb on - strandat 223.054 kb on - strandat 223.065 kb on + strandat 223.082 kb on - strandat 223.082 kb on - strandat 223.123 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.141 kb on - strandat 223.226 kb on - strand, within EX28DRAFT_2911at 223.235 kb on + strand, within EX28DRAFT_2911at 223.236 kb on - strand, within EX28DRAFT_2911at 223.349 kb on - strandat 223.419 kb on - strand, within EX28DRAFT_2912at 223.419 kb on - strand, within EX28DRAFT_2912at 223.451 kb on + strand, within EX28DRAFT_2912at 223.452 kb on - strand, within EX28DRAFT_2912at 223.457 kb on + strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.478 kb on - strandat 223.490 kb on - strandat 223.492 kb on + strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.534 kb on + strandat 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 224.007 kb on + strand, within EX28DRAFT_2913at 224.008 kb on - strand, within EX28DRAFT_2913

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
220,009 + EX28DRAFT_2909 0.22 -0.9
220,010 - EX28DRAFT_2909 0.23 -0.2
220,257 - EX28DRAFT_2909 0.43 -0.8
220,341 - EX28DRAFT_2909 0.50 -2.5
220,374 + EX28DRAFT_2909 0.53 +0.0
220,746 - EX28DRAFT_2909 0.84 +0.1
220,746 - EX28DRAFT_2909 0.84 -0.8
220,750 + EX28DRAFT_2909 0.85 -0.1
220,750 + EX28DRAFT_2909 0.85 +0.3
220,751 - EX28DRAFT_2909 0.85 -0.2
220,751 - EX28DRAFT_2909 0.85 -0.1
220,914 - -2.5
221,069 + -1.4
221,069 + +0.4
221,070 - -0.0
221,070 - -0.1
221,092 - -0.4
221,267 - EX28DRAFT_2910 0.16 +1.1
221,296 - EX28DRAFT_2910 0.17 +0.1
221,296 - EX28DRAFT_2910 0.17 -2.8
221,516 - EX28DRAFT_2910 0.27 +0.5
221,639 + EX28DRAFT_2910 0.33 -0.1
221,639 + EX28DRAFT_2910 0.33 -0.5
221,732 + EX28DRAFT_2910 0.37 -1.1
221,732 + EX28DRAFT_2910 0.37 -0.3
221,733 - EX28DRAFT_2910 0.37 +1.1
221,782 + EX28DRAFT_2910 0.40 +0.2
221,782 + EX28DRAFT_2910 0.40 -0.9
221,783 - EX28DRAFT_2910 0.40 +1.4
221,783 - EX28DRAFT_2910 0.40 -0.2
222,165 + EX28DRAFT_2910 0.57 +1.0
222,178 - EX28DRAFT_2910 0.58 +0.3
222,227 + EX28DRAFT_2910 0.60 -2.7
222,335 + EX28DRAFT_2910 0.65 +0.2
222,336 - EX28DRAFT_2910 0.65 -0.7
222,336 - EX28DRAFT_2910 0.65 +0.3
222,369 + EX28DRAFT_2910 0.67 +0.2
222,511 - EX28DRAFT_2910 0.73 +0.1
222,511 - EX28DRAFT_2910 0.73 +0.8
222,541 - EX28DRAFT_2910 0.75 -0.5
222,597 + EX28DRAFT_2910 0.77 -0.9
222,597 + EX28DRAFT_2910 0.77 +0.3
222,597 + EX28DRAFT_2910 0.77 +0.2
222,598 - EX28DRAFT_2910 0.77 +1.4
222,656 + EX28DRAFT_2910 0.80 +0.3
222,657 - EX28DRAFT_2910 0.80 -0.5
222,735 - EX28DRAFT_2910 0.84 -0.4
222,765 + EX28DRAFT_2910 0.85 -0.0
222,766 - EX28DRAFT_2910 0.85 -0.2
222,814 + EX28DRAFT_2910 0.87 +0.2
222,891 - -0.9
222,912 + +0.0
222,912 + -1.2
222,912 + -0.3
222,913 - +1.0
222,913 - -0.3
222,913 - -0.2
222,913 - +0.6
222,914 + -1.6
222,914 + -0.5
222,914 + -0.9
222,914 + +0.5
222,915 - +0.2
222,946 + -1.4
222,968 - -0.5
223,054 - -0.2
223,065 + -1.6
223,082 - -0.2
223,082 - -0.2
223,123 - +0.5
223,126 - +0.9
223,126 - -0.6
223,126 - -0.5
223,141 - -1.8
223,226 - EX28DRAFT_2911 0.51 -0.1
223,235 + EX28DRAFT_2911 0.62 -0.5
223,236 - EX28DRAFT_2911 0.63 -0.7
223,349 - -0.6
223,419 - EX28DRAFT_2912 0.41 -0.6
223,419 - EX28DRAFT_2912 0.41 -0.1
223,451 + EX28DRAFT_2912 0.80 +0.5
223,452 - EX28DRAFT_2912 0.81 -0.6
223,457 + EX28DRAFT_2912 0.88 -0.1
223,458 - EX28DRAFT_2912 0.89 -0.3
223,458 - EX28DRAFT_2912 0.89 +0.1
223,458 - EX28DRAFT_2912 0.89 +0.2
223,478 - +0.7
223,490 - -2.5
223,492 + +0.3
223,493 - +0.3
223,493 - -1.2
223,493 - -0.6
223,534 + -1.6
223,844 - EX28DRAFT_2913 0.13 -0.4
223,844 - EX28DRAFT_2913 0.13 -4.1
223,844 - EX28DRAFT_2913 0.13 +0.5
224,007 + EX28DRAFT_2913 0.29 +0.3
224,008 - EX28DRAFT_2913 0.29 -0.1

Or see this region's nucleotide sequence