Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2655

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2654 and EX28DRAFT_2655 are separated by 106 nucleotidesEX28DRAFT_2655 and EX28DRAFT_2656 are separated by 260 nucleotides EX28DRAFT_2654: EX28DRAFT_2654 - Alpha/beta hydrolase of unknown function (DUF1100), at 2,691,388 to 2,692,632 _2654 EX28DRAFT_2655: EX28DRAFT_2655 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins, at 2,692,739 to 2,693,197 _2655 EX28DRAFT_2656: EX28DRAFT_2656 - Xaa-His dipeptidase, at 2,693,458 to 2,694,915 _2656 Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -2 -1 0 1 2at 2691.780 kb on + strand, within EX28DRAFT_2654at 2691.781 kb on - strand, within EX28DRAFT_2654at 2691.782 kb on + strand, within EX28DRAFT_2654at 2691.783 kb on - strand, within EX28DRAFT_2654at 2691.993 kb on - strand, within EX28DRAFT_2654at 2692.002 kb on - strand, within EX28DRAFT_2654at 2692.004 kb on + strand, within EX28DRAFT_2654at 2692.074 kb on + strand, within EX28DRAFT_2654at 2692.658 kb on - strandat 2692.666 kb on + strandat 2692.666 kb on + strandat 2692.666 kb on + strandat 2692.686 kb on + strandat 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.011 kb on - strand, within EX28DRAFT_2655at 2693.101 kb on + strand, within EX28DRAFT_2655at 2693.185 kb on - strandat 2693.220 kb on + strandat 2693.252 kb on - strandat 2693.329 kb on + strandat 2693.329 kb on + strandat 2693.330 kb on - strandat 2693.330 kb on - strandat 2693.330 kb on - strandat 2693.356 kb on + strandat 2693.395 kb on + strandat 2693.396 kb on - strandat 2693.396 kb on - strandat 2693.454 kb on + strandat 2693.455 kb on - strandat 2693.455 kb on - strandat 2693.562 kb on + strandat 2693.562 kb on + strandat 2693.563 kb on - strandat 2693.563 kb on - strandat 2693.565 kb on + strandat 2693.566 kb on - strandat 2693.753 kb on - strand, within EX28DRAFT_2656at 2693.785 kb on - strand, within EX28DRAFT_2656

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
2,691,780 + EX28DRAFT_2654 0.31 -0.6
2,691,781 - EX28DRAFT_2654 0.32 +0.2
2,691,782 + EX28DRAFT_2654 0.32 -0.6
2,691,783 - EX28DRAFT_2654 0.32 +0.3
2,691,993 - EX28DRAFT_2654 0.49 -0.2
2,692,002 - EX28DRAFT_2654 0.49 -1.8
2,692,004 + EX28DRAFT_2654 0.49 +0.4
2,692,074 + EX28DRAFT_2654 0.55 -0.1
2,692,658 - +0.2
2,692,666 + -0.5
2,692,666 + +0.4
2,692,666 + -0.2
2,692,686 + +0.9
2,693,011 - EX28DRAFT_2655 0.59 -0.5
2,693,011 - EX28DRAFT_2655 0.59 -0.1
2,693,011 - EX28DRAFT_2655 0.59 -0.7
2,693,011 - EX28DRAFT_2655 0.59 -1.8
2,693,101 + EX28DRAFT_2655 0.79 -2.1
2,693,185 - +0.3
2,693,220 + +0.4
2,693,252 - +1.2
2,693,329 + -0.3
2,693,329 + -0.0
2,693,330 - -0.5
2,693,330 - -0.1
2,693,330 - +0.2
2,693,356 + -0.5
2,693,395 + -0.2
2,693,396 - +2.6
2,693,396 - +0.5
2,693,454 + +0.3
2,693,455 - +0.7
2,693,455 - -0.2
2,693,562 + +0.5
2,693,562 + +0.9
2,693,563 - -0.1
2,693,563 - -0.3
2,693,565 + +0.7
2,693,566 - +0.4
2,693,753 - EX28DRAFT_2656 0.20 -0.6
2,693,785 - EX28DRAFT_2656 0.22 -0.3

Or see this region's nucleotide sequence