Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2614

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2613 and EX28DRAFT_2614 are separated by 49 nucleotidesEX28DRAFT_2614 and EX28DRAFT_2615 are separated by 13 nucleotides EX28DRAFT_2613: EX28DRAFT_2613 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,650,495 to 2,651,991 _2613 EX28DRAFT_2614: EX28DRAFT_2614 - Multidrug resistance efflux pump, at 2,652,041 to 2,653,183 _2614 EX28DRAFT_2615: EX28DRAFT_2615 - drug resistance transporter, EmrB/QacA subfamily, at 2,653,197 to 2,654,741 _2615 Position (kb) 2652 2653 2654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.100 kb on + strand, within EX28DRAFT_2613at 2651.101 kb on - strand, within EX28DRAFT_2613at 2651.101 kb on - strand, within EX28DRAFT_2613at 2651.132 kb on + strand, within EX28DRAFT_2613at 2651.132 kb on + strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.133 kb on - strand, within EX28DRAFT_2613at 2651.134 kb on + strand, within EX28DRAFT_2613at 2651.134 kb on + strand, within EX28DRAFT_2613at 2651.135 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.172 kb on - strand, within EX28DRAFT_2613at 2651.288 kb on + strand, within EX28DRAFT_2613at 2651.289 kb on - strand, within EX28DRAFT_2613at 2651.289 kb on - strand, within EX28DRAFT_2613at 2651.412 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.562 kb on + strand, within EX28DRAFT_2613at 2651.675 kb on - strand, within EX28DRAFT_2613at 2651.833 kb on + strand, within EX28DRAFT_2613at 2651.915 kb on + strandat 2651.973 kb on + strandat 2652.016 kb on - strandat 2652.019 kb on + strandat 2652.114 kb on + strandat 2652.122 kb on + strandat 2652.122 kb on + strandat 2652.212 kb on + strand, within EX28DRAFT_2614at 2652.329 kb on - strand, within EX28DRAFT_2614at 2652.946 kb on - strand, within EX28DRAFT_2614at 2652.996 kb on + strand, within EX28DRAFT_2614at 2652.997 kb on - strand, within EX28DRAFT_2614at 2653.069 kb on + strandat 2653.069 kb on + strandat 2653.070 kb on - strandat 2653.166 kb on - strandat 2653.166 kb on - strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.202 kb on + strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.203 kb on - strandat 2653.207 kb on + strandat 2653.207 kb on + strandat 2653.207 kb on + strandat 2653.208 kb on - strandat 2653.208 kb on - strandat 2653.208 kb on - strandat 2653.245 kb on - strandat 2653.250 kb on - strandat 2653.267 kb on + strandat 2653.268 kb on - strandat 2653.268 kb on - strandat 2653.387 kb on - strand, within EX28DRAFT_2615at 2653.484 kb on + strand, within EX28DRAFT_2615at 2653.639 kb on + strand, within EX28DRAFT_2615at 2653.728 kb on - strand, within EX28DRAFT_2615at 2653.815 kb on - strand, within EX28DRAFT_2615at 2653.815 kb on - strand, within EX28DRAFT_2615at 2653.820 kb on + strand, within EX28DRAFT_2615at 2654.103 kb on + strand, within EX28DRAFT_2615at 2654.105 kb on + strand, within EX28DRAFT_2615at 2654.106 kb on - strand, within EX28DRAFT_2615at 2654.111 kb on - strand, within EX28DRAFT_2615at 2654.116 kb on - strand, within EX28DRAFT_2615at 2654.117 kb on + strand, within EX28DRAFT_2615at 2654.117 kb on + strand, within EX28DRAFT_2615at 2654.118 kb on - strand, within EX28DRAFT_2615at 2654.118 kb on - strand, within EX28DRAFT_2615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
2,651,100 + EX28DRAFT_2613 0.40 -0.5
2,651,100 + EX28DRAFT_2613 0.40 +0.2
2,651,100 + EX28DRAFT_2613 0.40 -0.5
2,651,100 + EX28DRAFT_2613 0.40 +1.1
2,651,100 + EX28DRAFT_2613 0.40 +0.2
2,651,100 + EX28DRAFT_2613 0.40 -1.5
2,651,101 - EX28DRAFT_2613 0.40 -0.1
2,651,101 - EX28DRAFT_2613 0.40 -0.9
2,651,132 + EX28DRAFT_2613 0.43 +0.1
2,651,132 + EX28DRAFT_2613 0.43 +0.2
2,651,133 - EX28DRAFT_2613 0.43 +0.0
2,651,133 - EX28DRAFT_2613 0.43 +0.5
2,651,133 - EX28DRAFT_2613 0.43 +0.3
2,651,133 - EX28DRAFT_2613 0.43 +0.5
2,651,133 - EX28DRAFT_2613 0.43 -0.6
2,651,134 + EX28DRAFT_2613 0.43 -0.4
2,651,134 + EX28DRAFT_2613 0.43 +0.6
2,651,135 - EX28DRAFT_2613 0.43 -0.1
2,651,172 - EX28DRAFT_2613 0.45 +0.1
2,651,172 - EX28DRAFT_2613 0.45 -0.7
2,651,172 - EX28DRAFT_2613 0.45 -0.9
2,651,288 + EX28DRAFT_2613 0.53 -0.4
2,651,289 - EX28DRAFT_2613 0.53 -0.2
2,651,289 - EX28DRAFT_2613 0.53 +2.2
2,651,412 + EX28DRAFT_2613 0.61 -0.4
2,651,562 + EX28DRAFT_2613 0.71 +1.2
2,651,562 + EX28DRAFT_2613 0.71 -0.0
2,651,562 + EX28DRAFT_2613 0.71 -0.3
2,651,675 - EX28DRAFT_2613 0.79 +0.2
2,651,833 + EX28DRAFT_2613 0.89 +1.0
2,651,915 + +0.6
2,651,973 + -0.0
2,652,016 - +0.1
2,652,019 + +0.3
2,652,114 + -0.2
2,652,122 + -0.2
2,652,122 + -0.2
2,652,212 + EX28DRAFT_2614 0.15 -0.2
2,652,329 - EX28DRAFT_2614 0.25 +2.0
2,652,946 - EX28DRAFT_2614 0.79 +0.6
2,652,996 + EX28DRAFT_2614 0.84 +0.6
2,652,997 - EX28DRAFT_2614 0.84 +0.4
2,653,069 + +0.3
2,653,069 + +0.6
2,653,070 - -0.2
2,653,166 - +0.1
2,653,166 - +0.2
2,653,202 + +1.3
2,653,202 + -0.3
2,653,202 + +0.1
2,653,202 + +0.9
2,653,203 - -0.7
2,653,203 - +1.1
2,653,203 - +0.2
2,653,203 - +0.5
2,653,203 - +0.2
2,653,207 + +0.7
2,653,207 + +0.3
2,653,207 + -0.6
2,653,208 - +0.2
2,653,208 - +0.0
2,653,208 - -0.5
2,653,245 - +1.6
2,653,250 - +0.9
2,653,267 + +1.4
2,653,268 - -0.1
2,653,268 - +0.3
2,653,387 - EX28DRAFT_2615 0.12 +0.2
2,653,484 + EX28DRAFT_2615 0.19 +0.3
2,653,639 + EX28DRAFT_2615 0.29 +0.1
2,653,728 - EX28DRAFT_2615 0.34 -0.3
2,653,815 - EX28DRAFT_2615 0.40 -1.6
2,653,815 - EX28DRAFT_2615 0.40 -1.0
2,653,820 + EX28DRAFT_2615 0.40 -0.0
2,654,103 + EX28DRAFT_2615 0.59 -0.0
2,654,105 + EX28DRAFT_2615 0.59 -0.1
2,654,106 - EX28DRAFT_2615 0.59 +0.7
2,654,111 - EX28DRAFT_2615 0.59 -3.4
2,654,116 - EX28DRAFT_2615 0.59 +0.2
2,654,117 + EX28DRAFT_2615 0.60 +0.8
2,654,117 + EX28DRAFT_2615 0.60 +0.1
2,654,118 - EX28DRAFT_2615 0.60 -2.8
2,654,118 - EX28DRAFT_2615 0.60 -0.4

Or see this region's nucleotide sequence