Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2613 and EX28DRAFT_2614 are separated by 49 nucleotides EX28DRAFT_2614 and EX28DRAFT_2615 are separated by 13 nucleotides
EX28DRAFT_2613: EX28DRAFT_2613 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,650,495 to 2,651,991
_2613
EX28DRAFT_2614: EX28DRAFT_2614 - Multidrug resistance efflux pump, at 2,652,041 to 2,653,183
_2614
EX28DRAFT_2615: EX28DRAFT_2615 - drug resistance transporter, EmrB/QacA subfamily, at 2,653,197 to 2,654,741
_2615
Position (kb)
2652
2653
2654 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.100 kb on + strand, within EX28DRAFT_2613 at 2651.101 kb on - strand, within EX28DRAFT_2613 at 2651.101 kb on - strand, within EX28DRAFT_2613 at 2651.132 kb on + strand, within EX28DRAFT_2613 at 2651.132 kb on + strand, within EX28DRAFT_2613 at 2651.133 kb on - strand, within EX28DRAFT_2613 at 2651.133 kb on - strand, within EX28DRAFT_2613 at 2651.133 kb on - strand, within EX28DRAFT_2613 at 2651.133 kb on - strand, within EX28DRAFT_2613 at 2651.133 kb on - strand, within EX28DRAFT_2613 at 2651.134 kb on + strand, within EX28DRAFT_2613 at 2651.134 kb on + strand, within EX28DRAFT_2613 at 2651.135 kb on - strand, within EX28DRAFT_2613 at 2651.172 kb on - strand, within EX28DRAFT_2613 at 2651.172 kb on - strand, within EX28DRAFT_2613 at 2651.172 kb on - strand, within EX28DRAFT_2613 at 2651.288 kb on + strand, within EX28DRAFT_2613 at 2651.289 kb on - strand, within EX28DRAFT_2613 at 2651.289 kb on - strand, within EX28DRAFT_2613 at 2651.412 kb on + strand, within EX28DRAFT_2613 at 2651.562 kb on + strand, within EX28DRAFT_2613 at 2651.562 kb on + strand, within EX28DRAFT_2613 at 2651.562 kb on + strand, within EX28DRAFT_2613 at 2651.675 kb on - strand, within EX28DRAFT_2613 at 2651.833 kb on + strand, within EX28DRAFT_2613 at 2651.915 kb on + strand at 2651.973 kb on + strand at 2652.016 kb on - strand at 2652.019 kb on + strand at 2652.114 kb on + strand at 2652.122 kb on + strand at 2652.122 kb on + strand at 2652.212 kb on + strand, within EX28DRAFT_2614 at 2652.329 kb on - strand, within EX28DRAFT_2614 at 2652.946 kb on - strand, within EX28DRAFT_2614 at 2652.996 kb on + strand, within EX28DRAFT_2614 at 2652.997 kb on - strand, within EX28DRAFT_2614 at 2653.069 kb on + strand at 2653.069 kb on + strand at 2653.070 kb on - strand at 2653.166 kb on - strand at 2653.166 kb on - strand at 2653.202 kb on + strand at 2653.202 kb on + strand at 2653.202 kb on + strand at 2653.202 kb on + strand at 2653.203 kb on - strand at 2653.203 kb on - strand at 2653.203 kb on - strand at 2653.203 kb on - strand at 2653.203 kb on - strand at 2653.207 kb on + strand at 2653.207 kb on + strand at 2653.207 kb on + strand at 2653.208 kb on - strand at 2653.208 kb on - strand at 2653.208 kb on - strand at 2653.245 kb on - strand at 2653.250 kb on - strand at 2653.267 kb on + strand at 2653.268 kb on - strand at 2653.268 kb on - strand at 2653.387 kb on - strand, within EX28DRAFT_2615 at 2653.484 kb on + strand, within EX28DRAFT_2615 at 2653.639 kb on + strand, within EX28DRAFT_2615 at 2653.728 kb on - strand, within EX28DRAFT_2615 at 2653.815 kb on - strand, within EX28DRAFT_2615 at 2653.815 kb on - strand, within EX28DRAFT_2615 at 2653.820 kb on + strand, within EX28DRAFT_2615 at 2654.103 kb on + strand, within EX28DRAFT_2615 at 2654.105 kb on + strand, within EX28DRAFT_2615 at 2654.106 kb on - strand, within EX28DRAFT_2615 at 2654.111 kb on - strand, within EX28DRAFT_2615 at 2654.116 kb on - strand, within EX28DRAFT_2615 at 2654.117 kb on + strand, within EX28DRAFT_2615 at 2654.117 kb on + strand, within EX28DRAFT_2615 at 2654.118 kb on - strand, within EX28DRAFT_2615 at 2654.118 kb on - strand, within EX28DRAFT_2615
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,651,100 + EX28DRAFT_2613 0.40 -0.5 2,651,100 + EX28DRAFT_2613 0.40 +0.2 2,651,100 + EX28DRAFT_2613 0.40 -0.5 2,651,100 + EX28DRAFT_2613 0.40 +1.1 2,651,100 + EX28DRAFT_2613 0.40 +0.2 2,651,100 + EX28DRAFT_2613 0.40 -1.5 2,651,101 - EX28DRAFT_2613 0.40 -0.1 2,651,101 - EX28DRAFT_2613 0.40 -0.9 2,651,132 + EX28DRAFT_2613 0.43 +0.1 2,651,132 + EX28DRAFT_2613 0.43 +0.2 2,651,133 - EX28DRAFT_2613 0.43 +0.0 2,651,133 - EX28DRAFT_2613 0.43 +0.5 2,651,133 - EX28DRAFT_2613 0.43 +0.3 2,651,133 - EX28DRAFT_2613 0.43 +0.5 2,651,133 - EX28DRAFT_2613 0.43 -0.6 2,651,134 + EX28DRAFT_2613 0.43 -0.4 2,651,134 + EX28DRAFT_2613 0.43 +0.6 2,651,135 - EX28DRAFT_2613 0.43 -0.1 2,651,172 - EX28DRAFT_2613 0.45 +0.1 2,651,172 - EX28DRAFT_2613 0.45 -0.7 2,651,172 - EX28DRAFT_2613 0.45 -0.9 2,651,288 + EX28DRAFT_2613 0.53 -0.4 2,651,289 - EX28DRAFT_2613 0.53 -0.2 2,651,289 - EX28DRAFT_2613 0.53 +2.2 2,651,412 + EX28DRAFT_2613 0.61 -0.4 2,651,562 + EX28DRAFT_2613 0.71 +1.2 2,651,562 + EX28DRAFT_2613 0.71 -0.0 2,651,562 + EX28DRAFT_2613 0.71 -0.3 2,651,675 - EX28DRAFT_2613 0.79 +0.2 2,651,833 + EX28DRAFT_2613 0.89 +1.0 2,651,915 + +0.6 2,651,973 + -0.0 2,652,016 - +0.1 2,652,019 + +0.3 2,652,114 + -0.2 2,652,122 + -0.2 2,652,122 + -0.2 2,652,212 + EX28DRAFT_2614 0.15 -0.2 2,652,329 - EX28DRAFT_2614 0.25 +2.0 2,652,946 - EX28DRAFT_2614 0.79 +0.6 2,652,996 + EX28DRAFT_2614 0.84 +0.6 2,652,997 - EX28DRAFT_2614 0.84 +0.4 2,653,069 + +0.3 2,653,069 + +0.6 2,653,070 - -0.2 2,653,166 - +0.1 2,653,166 - +0.2 2,653,202 + +1.3 2,653,202 + -0.3 2,653,202 + +0.1 2,653,202 + +0.9 2,653,203 - -0.7 2,653,203 - +1.1 2,653,203 - +0.2 2,653,203 - +0.5 2,653,203 - +0.2 2,653,207 + +0.7 2,653,207 + +0.3 2,653,207 + -0.6 2,653,208 - +0.2 2,653,208 - +0.0 2,653,208 - -0.5 2,653,245 - +1.6 2,653,250 - +0.9 2,653,267 + +1.4 2,653,268 - -0.1 2,653,268 - +0.3 2,653,387 - EX28DRAFT_2615 0.12 +0.2 2,653,484 + EX28DRAFT_2615 0.19 +0.3 2,653,639 + EX28DRAFT_2615 0.29 +0.1 2,653,728 - EX28DRAFT_2615 0.34 -0.3 2,653,815 - EX28DRAFT_2615 0.40 -1.6 2,653,815 - EX28DRAFT_2615 0.40 -1.0 2,653,820 + EX28DRAFT_2615 0.40 -0.0 2,654,103 + EX28DRAFT_2615 0.59 -0.0 2,654,105 + EX28DRAFT_2615 0.59 -0.1 2,654,106 - EX28DRAFT_2615 0.59 +0.7 2,654,111 - EX28DRAFT_2615 0.59 -3.4 2,654,116 - EX28DRAFT_2615 0.59 +0.2 2,654,117 + EX28DRAFT_2615 0.60 +0.8 2,654,117 + EX28DRAFT_2615 0.60 +0.1 2,654,118 - EX28DRAFT_2615 0.60 -2.8 2,654,118 - EX28DRAFT_2615 0.60 -0.4
Or see this region's nucleotide sequence