Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2608

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2607 and EX28DRAFT_2608 overlap by 14 nucleotidesEX28DRAFT_2608 and EX28DRAFT_2609 are separated by 363 nucleotides EX28DRAFT_2607: EX28DRAFT_2607 - Homocysteine/selenocysteine methylase (S-methylmethionine-dependent), at 2,643,433 to 2,644,365 _2607 EX28DRAFT_2608: EX28DRAFT_2608 - Amino acid transporters, at 2,644,352 to 2,645,752 _2608 EX28DRAFT_2609: EX28DRAFT_2609 - Predicted permease, at 2,646,116 to 2,647,225 _2609 Position (kb) 2644 2645 2646Strain fitness (log2 ratio) -3 -2 -1 0 1at 2643.389 kb on + strandat 2643.396 kb on - strandat 2643.494 kb on - strandat 2643.588 kb on - strand, within EX28DRAFT_2607at 2643.951 kb on - strand, within EX28DRAFT_2607at 2644.049 kb on + strand, within EX28DRAFT_2607at 2644.049 kb on + strand, within EX28DRAFT_2607at 2644.050 kb on - strand, within EX28DRAFT_2607at 2644.194 kb on - strand, within EX28DRAFT_2607at 2644.264 kb on + strand, within EX28DRAFT_2607at 2644.387 kb on + strandat 2644.387 kb on + strandat 2644.401 kb on + strandat 2644.401 kb on + strandat 2644.402 kb on - strandat 2644.404 kb on + strandat 2644.504 kb on + strand, within EX28DRAFT_2608at 2644.723 kb on + strand, within EX28DRAFT_2608at 2644.724 kb on - strand, within EX28DRAFT_2608at 2644.724 kb on - strand, within EX28DRAFT_2608at 2644.831 kb on - strand, within EX28DRAFT_2608at 2645.006 kb on - strand, within EX28DRAFT_2608at 2645.006 kb on - strand, within EX28DRAFT_2608at 2645.219 kb on - strand, within EX28DRAFT_2608at 2645.252 kb on - strand, within EX28DRAFT_2608at 2645.324 kb on - strand, within EX28DRAFT_2608at 2645.599 kb on - strand, within EX28DRAFT_2608at 2645.641 kb on - strandat 2645.692 kb on + strandat 2645.692 kb on + strandat 2645.752 kb on + strandat 2645.755 kb on + strandat 2645.755 kb on + strandat 2645.756 kb on - strandat 2645.756 kb on - strandat 2645.756 kb on - strandat 2645.762 kb on + strandat 2645.762 kb on + strandat 2645.764 kb on + strandat 2645.764 kb on + strandat 2645.765 kb on - strandat 2645.768 kb on + strandat 2645.769 kb on - strandat 2645.778 kb on + strandat 2645.778 kb on + strandat 2645.778 kb on + strandat 2645.779 kb on - strandat 2645.779 kb on - strandat 2645.800 kb on + strandat 2645.800 kb on + strandat 2645.801 kb on - strandat 2645.825 kb on + strandat 2645.889 kb on - strandat 2645.889 kb on - strandat 2645.889 kb on - strandat 2645.930 kb on + strandat 2645.930 kb on + strandat 2645.931 kb on - strandat 2645.934 kb on + strandat 2645.935 kb on - strandat 2645.935 kb on - strandat 2645.935 kb on - strandat 2646.059 kb on + strandat 2646.060 kb on - strandat 2646.078 kb on + strandat 2646.079 kb on - strandat 2646.201 kb on - strandat 2646.213 kb on + strandat 2646.337 kb on + strand, within EX28DRAFT_2609at 2646.337 kb on + strand, within EX28DRAFT_2609at 2646.338 kb on - strand, within EX28DRAFT_2609at 2646.390 kb on - strand, within EX28DRAFT_2609at 2646.390 kb on - strand, within EX28DRAFT_2609at 2646.551 kb on + strand, within EX28DRAFT_2609at 2646.552 kb on - strand, within EX28DRAFT_2609at 2646.552 kb on - strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.623 kb on + strand, within EX28DRAFT_2609at 2646.624 kb on - strand, within EX28DRAFT_2609

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,643,389 + -0.2
2,643,396 - +0.6
2,643,494 - +0.3
2,643,588 - EX28DRAFT_2607 0.17 +1.1
2,643,951 - EX28DRAFT_2607 0.56 +0.3
2,644,049 + EX28DRAFT_2607 0.66 -0.6
2,644,049 + EX28DRAFT_2607 0.66 +0.0
2,644,050 - EX28DRAFT_2607 0.66 -0.4
2,644,194 - EX28DRAFT_2607 0.82 +0.3
2,644,264 + EX28DRAFT_2607 0.89 -2.8
2,644,387 + +0.2
2,644,387 + -0.1
2,644,401 + +0.8
2,644,401 + -0.9
2,644,402 - -1.0
2,644,404 + -0.1
2,644,504 + EX28DRAFT_2608 0.11 +0.8
2,644,723 + EX28DRAFT_2608 0.26 +0.6
2,644,724 - EX28DRAFT_2608 0.27 -0.2
2,644,724 - EX28DRAFT_2608 0.27 -1.0
2,644,831 - EX28DRAFT_2608 0.34 +0.4
2,645,006 - EX28DRAFT_2608 0.47 +0.7
2,645,006 - EX28DRAFT_2608 0.47 -0.7
2,645,219 - EX28DRAFT_2608 0.62 +0.3
2,645,252 - EX28DRAFT_2608 0.64 +0.4
2,645,324 - EX28DRAFT_2608 0.69 -0.2
2,645,599 - EX28DRAFT_2608 0.89 -0.1
2,645,641 - +0.8
2,645,692 + +0.7
2,645,692 + +0.5
2,645,752 + -0.4
2,645,755 + +0.1
2,645,755 + -0.3
2,645,756 - -0.2
2,645,756 - -0.1
2,645,756 - +1.0
2,645,762 + -0.2
2,645,762 + -0.6
2,645,764 + +0.2
2,645,764 + +0.5
2,645,765 - +0.6
2,645,768 + +1.5
2,645,769 - -3.1
2,645,778 + -1.0
2,645,778 + -0.1
2,645,778 + -0.2
2,645,779 - -0.4
2,645,779 - +0.2
2,645,800 + +1.2
2,645,800 + -0.3
2,645,801 - +0.1
2,645,825 + +0.1
2,645,889 - -1.1
2,645,889 - -0.2
2,645,889 - -0.4
2,645,930 + +0.2
2,645,930 + -1.2
2,645,931 - +0.5
2,645,934 + -0.2
2,645,935 - -0.1
2,645,935 - -0.2
2,645,935 - -0.1
2,646,059 + -0.2
2,646,060 - +0.2
2,646,078 + -2.2
2,646,079 - -1.8
2,646,201 - +0.1
2,646,213 + +0.2
2,646,337 + EX28DRAFT_2609 0.20 +0.6
2,646,337 + EX28DRAFT_2609 0.20 +0.4
2,646,338 - EX28DRAFT_2609 0.20 +0.2
2,646,390 - EX28DRAFT_2609 0.25 +0.4
2,646,390 - EX28DRAFT_2609 0.25 +0.7
2,646,551 + EX28DRAFT_2609 0.39 +0.6
2,646,552 - EX28DRAFT_2609 0.39 +0.2
2,646,552 - EX28DRAFT_2609 0.39 -0.5
2,646,623 + EX28DRAFT_2609 0.46 +0.3
2,646,623 + EX28DRAFT_2609 0.46 -0.7
2,646,623 + EX28DRAFT_2609 0.46 +0.2
2,646,624 - EX28DRAFT_2609 0.46 -0.0

Or see this region's nucleotide sequence