Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2603

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2602 and EX28DRAFT_2603 are separated by 69 nucleotidesEX28DRAFT_2603 and EX28DRAFT_2604 overlap by 4 nucleotidesEX28DRAFT_2604 and EX28DRAFT_2605 overlap by 4 nucleotides EX28DRAFT_2602: EX28DRAFT_2602 - Putative hemolysin, at 2,637,985 to 2,639,709 _2602 EX28DRAFT_2603: EX28DRAFT_2603 - Probable taurine catabolism dioxygenase, at 2,639,779 to 2,640,630 _2603 EX28DRAFT_2604: EX28DRAFT_2604 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,640,627 to 2,641,454 _2604 EX28DRAFT_2605: EX28DRAFT_2605 - ABC-type taurine transport system, ATPase component, at 2,641,451 to 2,642,218 _2605 Position (kb) 2639 2640 2641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2638.870 kb on - strand, within EX28DRAFT_2602at 2638.881 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.891 kb on + strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.892 kb on - strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.893 kb on + strand, within EX28DRAFT_2602at 2638.894 kb on - strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.128 kb on + strand, within EX28DRAFT_2602at 2639.129 kb on - strand, within EX28DRAFT_2602at 2639.129 kb on - strand, within EX28DRAFT_2602at 2639.134 kb on + strand, within EX28DRAFT_2602at 2639.135 kb on - strand, within EX28DRAFT_2602at 2639.135 kb on - strand, within EX28DRAFT_2602at 2639.205 kb on + strand, within EX28DRAFT_2602at 2639.242 kb on + strand, within EX28DRAFT_2602at 2639.243 kb on - strand, within EX28DRAFT_2602at 2639.243 kb on - strand, within EX28DRAFT_2602at 2639.246 kb on + strand, within EX28DRAFT_2602at 2639.247 kb on - strand, within EX28DRAFT_2602at 2639.247 kb on - strand, within EX28DRAFT_2602at 2639.293 kb on + strand, within EX28DRAFT_2602at 2639.572 kb on - strandat 2639.572 kb on - strandat 2639.572 kb on - strandat 2639.667 kb on + strandat 2639.667 kb on + strandat 2639.681 kb on + strandat 2639.682 kb on - strandat 2639.849 kb on + strandat 2639.864 kb on + strandat 2640.146 kb on + strand, within EX28DRAFT_2603at 2640.227 kb on + strand, within EX28DRAFT_2603at 2640.325 kb on + strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.592 kb on - strandat 2640.593 kb on + strandat 2640.593 kb on + strandat 2640.634 kb on - strandat 2640.634 kb on - strandat 2641.007 kb on - strand, within EX28DRAFT_2604at 2641.134 kb on - strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.216 kb on - strand, within EX28DRAFT_2604at 2641.216 kb on - strand, within EX28DRAFT_2604at 2641.265 kb on + strand, within EX28DRAFT_2604at 2641.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
2,638,870 - EX28DRAFT_2602 0.51 -2.6
2,638,881 + EX28DRAFT_2602 0.52 +0.2
2,638,891 + EX28DRAFT_2602 0.53 +0.7
2,638,891 + EX28DRAFT_2602 0.53 +0.5
2,638,891 + EX28DRAFT_2602 0.53 -0.2
2,638,891 + EX28DRAFT_2602 0.53 +1.5
2,638,891 + EX28DRAFT_2602 0.53 -1.8
2,638,891 + EX28DRAFT_2602 0.53 +0.8
2,638,892 - EX28DRAFT_2602 0.53 -0.1
2,638,892 - EX28DRAFT_2602 0.53 -0.1
2,638,892 - EX28DRAFT_2602 0.53 -0.2
2,638,892 - EX28DRAFT_2602 0.53 -0.2
2,638,893 + EX28DRAFT_2602 0.53 -0.8
2,638,893 + EX28DRAFT_2602 0.53 +0.5
2,638,893 + EX28DRAFT_2602 0.53 +0.5
2,638,894 - EX28DRAFT_2602 0.53 +0.2
2,639,128 + EX28DRAFT_2602 0.66 +0.5
2,639,128 + EX28DRAFT_2602 0.66 -0.1
2,639,128 + EX28DRAFT_2602 0.66 +0.7
2,639,129 - EX28DRAFT_2602 0.66 -0.9
2,639,129 - EX28DRAFT_2602 0.66 -0.3
2,639,134 + EX28DRAFT_2602 0.67 -0.2
2,639,135 - EX28DRAFT_2602 0.67 +0.2
2,639,135 - EX28DRAFT_2602 0.67 +0.8
2,639,205 + EX28DRAFT_2602 0.71 +2.5
2,639,242 + EX28DRAFT_2602 0.73 +0.6
2,639,243 - EX28DRAFT_2602 0.73 +2.1
2,639,243 - EX28DRAFT_2602 0.73 -1.4
2,639,246 + EX28DRAFT_2602 0.73 +0.1
2,639,247 - EX28DRAFT_2602 0.73 -0.1
2,639,247 - EX28DRAFT_2602 0.73 -0.1
2,639,293 + EX28DRAFT_2602 0.76 -0.1
2,639,572 - +0.8
2,639,572 - -0.2
2,639,572 - -3.8
2,639,667 + +0.6
2,639,667 + +0.4
2,639,681 + -0.4
2,639,682 - +2.3
2,639,849 + -1.2
2,639,864 + -0.4
2,640,146 + EX28DRAFT_2603 0.43 +0.8
2,640,227 + EX28DRAFT_2603 0.53 +0.3
2,640,325 + EX28DRAFT_2603 0.64 +1.2
2,640,525 - EX28DRAFT_2603 0.88 +0.7
2,640,525 - EX28DRAFT_2603 0.88 +0.3
2,640,525 - EX28DRAFT_2603 0.88 +0.1
2,640,592 - +0.4
2,640,593 + +0.8
2,640,593 + +0.4
2,640,634 - -0.6
2,640,634 - -3.8
2,641,007 - EX28DRAFT_2604 0.46 +0.8
2,641,134 - EX28DRAFT_2604 0.61 -0.2
2,641,215 + EX28DRAFT_2604 0.71 +0.3
2,641,215 + EX28DRAFT_2604 0.71 +0.2
2,641,215 + EX28DRAFT_2604 0.71 -1.1
2,641,216 - EX28DRAFT_2604 0.71 -0.2
2,641,216 - EX28DRAFT_2604 0.71 +0.9
2,641,265 + EX28DRAFT_2604 0.77 -3.4
2,641,495 - -0.2

Or see this region's nucleotide sequence