Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2529 and EX28DRAFT_2530 are separated by 212 nucleotides EX28DRAFT_2530 and EX28DRAFT_2531 are separated by 210 nucleotides
EX28DRAFT_2529: EX28DRAFT_2529 - Parvulin-like peptidyl-prolyl isomerase, at 2,559,413 to 2,561,284
_2529
EX28DRAFT_2530: EX28DRAFT_2530 - Bacterial nucleoid DNA-binding protein, at 2,561,497 to 2,561,769
_2530
EX28DRAFT_2531: EX28DRAFT_2531 - endopeptidase La, at 2,561,980 to 2,564,334
_2531
Position (kb)
2561
2562 Strain fitness (log2 ratio)
-2
-1
0
1 at 2560.580 kb on - strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.581 kb on + strand, within EX28DRAFT_2529 at 2560.633 kb on - strand, within EX28DRAFT_2529 at 2560.636 kb on - strand, within EX28DRAFT_2529 at 2560.831 kb on - strand, within EX28DRAFT_2529 at 2561.163 kb on + strand at 2561.188 kb on - strand at 2561.271 kb on - strand at 2561.290 kb on - strand at 2561.362 kb on - strand at 2561.465 kb on + strand at 2561.466 kb on - strand at 2561.524 kb on - strand at 2561.686 kb on + strand, within EX28DRAFT_2530 at 2561.695 kb on + strand, within EX28DRAFT_2530 at 2561.788 kb on - strand at 2561.795 kb on - strand at 2561.795 kb on - strand at 2561.836 kb on + strand at 2561.858 kb on + strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.859 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.886 kb on - strand at 2561.898 kb on - strand at 2561.902 kb on + strand at 2561.902 kb on + strand at 2561.906 kb on + strand at 2561.907 kb on - strand at 2561.908 kb on + strand at 2561.940 kb on + strand at 2561.941 kb on - strand at 2561.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 2,560,580 - EX28DRAFT_2529 0.62 -0.4 2,560,581 + EX28DRAFT_2529 0.62 +0.4 2,560,581 + EX28DRAFT_2529 0.62 +0.3 2,560,581 + EX28DRAFT_2529 0.62 -1.5 2,560,633 - EX28DRAFT_2529 0.65 -0.2 2,560,636 - EX28DRAFT_2529 0.65 -2.2 2,560,831 - EX28DRAFT_2529 0.76 +0.3 2,561,163 + -0.3 2,561,188 - -0.2 2,561,271 - -0.1 2,561,290 - +0.0 2,561,362 - +0.1 2,561,465 + +0.1 2,561,466 - -0.5 2,561,524 - -0.9 2,561,686 + EX28DRAFT_2530 0.69 -0.1 2,561,695 + EX28DRAFT_2530 0.73 +1.2 2,561,788 - +0.9 2,561,795 - -0.4 2,561,795 - +0.5 2,561,836 + -0.5 2,561,858 + -0.2 2,561,859 - +0.7 2,561,859 - +0.0 2,561,859 - -0.0 2,561,859 - -1.1 2,561,886 - -0.3 2,561,886 - -0.5 2,561,886 - +0.1 2,561,898 - +0.6 2,561,902 + +0.1 2,561,902 + -0.1 2,561,906 + +0.3 2,561,907 - +0.7 2,561,908 + -0.1 2,561,940 + +1.2 2,561,941 - -0.1 2,561,955 + +0.5
Or see this region's nucleotide sequence