Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2524

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2523 and EX28DRAFT_2524 are separated by 41 nucleotidesEX28DRAFT_2524 and EX28DRAFT_2525 are separated by 101 nucleotides EX28DRAFT_2523: EX28DRAFT_2523 - Cysteine synthase, at 2,553,852 to 2,554,901 _2523 EX28DRAFT_2524: EX28DRAFT_2524 - HAD-superfamily hydrolase, subfamily IIB, at 2,554,943 to 2,555,761 _2524 EX28DRAFT_2525: EX28DRAFT_2525 - ABC-type uncharacterized transport system, periplasmic component, at 2,555,863 to 2,557,563 _2525 Position (kb) 2554 2555 2556Strain fitness (log2 ratio) -1 0 1 2at 2553.970 kb on - strand, within EX28DRAFT_2523at 2553.970 kb on - strand, within EX28DRAFT_2523at 2554.050 kb on - strand, within EX28DRAFT_2523at 2554.081 kb on + strand, within EX28DRAFT_2523at 2554.081 kb on + strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.082 kb on - strand, within EX28DRAFT_2523at 2554.119 kb on + strand, within EX28DRAFT_2523at 2554.246 kb on - strand, within EX28DRAFT_2523at 2554.287 kb on + strand, within EX28DRAFT_2523at 2554.287 kb on + strand, within EX28DRAFT_2523at 2554.289 kb on + strand, within EX28DRAFT_2523at 2554.289 kb on + strand, within EX28DRAFT_2523at 2554.290 kb on - strand, within EX28DRAFT_2523at 2554.337 kb on + strand, within EX28DRAFT_2523at 2554.356 kb on - strand, within EX28DRAFT_2523at 2554.398 kb on + strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.399 kb on - strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.449 kb on + strand, within EX28DRAFT_2523at 2554.696 kb on + strand, within EX28DRAFT_2523at 2554.697 kb on - strand, within EX28DRAFT_2523at 2554.718 kb on + strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523at 2554.719 kb on - strand, within EX28DRAFT_2523at 2554.821 kb on + strandat 2554.900 kb on - strandat 2554.916 kb on + strandat 2554.916 kb on + strandat 2554.917 kb on - strandat 2554.917 kb on - strandat 2555.093 kb on + strand, within EX28DRAFT_2524at 2555.093 kb on + strand, within EX28DRAFT_2524at 2555.094 kb on - strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.140 kb on + strand, within EX28DRAFT_2524at 2555.201 kb on - strand, within EX28DRAFT_2524at 2555.329 kb on + strand, within EX28DRAFT_2524at 2555.329 kb on + strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.330 kb on - strand, within EX28DRAFT_2524at 2555.366 kb on - strand, within EX28DRAFT_2524at 2555.373 kb on + strand, within EX28DRAFT_2524at 2555.406 kb on - strand, within EX28DRAFT_2524at 2555.406 kb on - strand, within EX28DRAFT_2524at 2555.544 kb on - strand, within EX28DRAFT_2524at 2555.766 kb on - strandat 2555.787 kb on + strandat 2556.063 kb on - strand, within EX28DRAFT_2525at 2556.182 kb on + strand, within EX28DRAFT_2525at 2556.616 kb on + strand, within EX28DRAFT_2525at 2556.616 kb on + strand, within EX28DRAFT_2525at 2556.617 kb on - strand, within EX28DRAFT_2525

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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2,553,970 - EX28DRAFT_2523 0.11 +0.9
2,553,970 - EX28DRAFT_2523 0.11 +0.3
2,554,050 - EX28DRAFT_2523 0.19 +2.0
2,554,081 + EX28DRAFT_2523 0.22 -0.2
2,554,081 + EX28DRAFT_2523 0.22 -0.2
2,554,082 - EX28DRAFT_2523 0.22 +0.0
2,554,082 - EX28DRAFT_2523 0.22 +0.0
2,554,082 - EX28DRAFT_2523 0.22 -0.9
2,554,119 + EX28DRAFT_2523 0.25 +0.1
2,554,246 - EX28DRAFT_2523 0.38 +0.4
2,554,287 + EX28DRAFT_2523 0.41 +0.0
2,554,287 + EX28DRAFT_2523 0.41 +0.9
2,554,289 + EX28DRAFT_2523 0.42 +0.7
2,554,289 + EX28DRAFT_2523 0.42 +0.9
2,554,290 - EX28DRAFT_2523 0.42 -0.5
2,554,337 + EX28DRAFT_2523 0.46 -0.1
2,554,356 - EX28DRAFT_2523 0.48 -0.1
2,554,398 + EX28DRAFT_2523 0.52 +0.0
2,554,399 - EX28DRAFT_2523 0.52 -0.2
2,554,399 - EX28DRAFT_2523 0.52 +0.5
2,554,399 - EX28DRAFT_2523 0.52 +0.6
2,554,449 + EX28DRAFT_2523 0.57 -0.2
2,554,449 + EX28DRAFT_2523 0.57 -0.2
2,554,449 + EX28DRAFT_2523 0.57 -0.1
2,554,449 + EX28DRAFT_2523 0.57 -0.0
2,554,696 + EX28DRAFT_2523 0.80 -1.0
2,554,697 - EX28DRAFT_2523 0.80 +0.2
2,554,718 + EX28DRAFT_2523 0.82 -0.6
2,554,719 - EX28DRAFT_2523 0.83 +0.2
2,554,719 - EX28DRAFT_2523 0.83 +0.1
2,554,719 - EX28DRAFT_2523 0.83 +0.6
2,554,821 + +0.0
2,554,900 - +0.2
2,554,916 + -0.3
2,554,916 + +1.0
2,554,917 - -0.4
2,554,917 - +0.1
2,555,093 + EX28DRAFT_2524 0.18 +0.5
2,555,093 + EX28DRAFT_2524 0.18 -0.1
2,555,094 - EX28DRAFT_2524 0.18 +0.4
2,555,140 + EX28DRAFT_2524 0.24 -0.0
2,555,140 + EX28DRAFT_2524 0.24 -0.5
2,555,140 + EX28DRAFT_2524 0.24 +0.6
2,555,201 - EX28DRAFT_2524 0.32 -0.5
2,555,329 + EX28DRAFT_2524 0.47 -0.1
2,555,329 + EX28DRAFT_2524 0.47 +0.4
2,555,330 - EX28DRAFT_2524 0.47 -1.5
2,555,330 - EX28DRAFT_2524 0.47 +0.7
2,555,330 - EX28DRAFT_2524 0.47 +0.9
2,555,366 - EX28DRAFT_2524 0.52 +0.4
2,555,373 + EX28DRAFT_2524 0.53 +0.3
2,555,406 - EX28DRAFT_2524 0.57 +0.3
2,555,406 - EX28DRAFT_2524 0.57 +0.3
2,555,544 - EX28DRAFT_2524 0.73 +1.7
2,555,766 - -0.8
2,555,787 + +0.3
2,556,063 - EX28DRAFT_2525 0.12 -1.1
2,556,182 + EX28DRAFT_2525 0.19 +0.0
2,556,616 + EX28DRAFT_2525 0.44 +0.1
2,556,616 + EX28DRAFT_2525 0.44 -1.2
2,556,617 - EX28DRAFT_2525 0.44 -0.0

Or see this region's nucleotide sequence