Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1946

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1944 and EX28DRAFT_1945 are separated by 15 nucleotidesEX28DRAFT_1945 and EX28DRAFT_1946 overlap by 1 nucleotidesEX28DRAFT_1946 and EX28DRAFT_1947 are separated by 144 nucleotides EX28DRAFT_1944: EX28DRAFT_1944 - putative urate catabolism protein, at 1,949,395 to 1,950,327 _1944 EX28DRAFT_1945: EX28DRAFT_1945 - Hydantoin racemase, at 1,950,343 to 1,951,086 _1945 EX28DRAFT_1946: EX28DRAFT_1946 - Transcriptional regulators, at 1,951,086 to 1,951,802 _1946 EX28DRAFT_1947: EX28DRAFT_1947 - Cytosine/uracil/thiamine/allantoin permeases, at 1,951,947 to 1,953,443 _1947 Position (kb) 1951 1952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1950.215 kb on + strand, within EX28DRAFT_1944at 1950.215 kb on + strand, within EX28DRAFT_1944at 1950.377 kb on - strandat 1950.582 kb on + strand, within EX28DRAFT_1945at 1950.582 kb on + strand, within EX28DRAFT_1945at 1950.583 kb on - strand, within EX28DRAFT_1945at 1950.686 kb on + strand, within EX28DRAFT_1945at 1951.069 kb on + strandat 1951.070 kb on - strandat 1951.070 kb on - strandat 1951.071 kb on + strandat 1951.072 kb on - strandat 1951.170 kb on - strand, within EX28DRAFT_1946at 1951.414 kb on + strand, within EX28DRAFT_1946at 1951.791 kb on + strandat 1951.792 kb on - strandat 1951.792 kb on - strandat 1951.792 kb on - strandat 1951.907 kb on - strandat 1952.062 kb on - strandat 1952.406 kb on - strand, within EX28DRAFT_1947at 1952.577 kb on + strand, within EX28DRAFT_1947at 1952.578 kb on - strand, within EX28DRAFT_1947at 1952.682 kb on + strand, within EX28DRAFT_1947at 1952.683 kb on - strand, within EX28DRAFT_1947

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,950,215 + EX28DRAFT_1944 0.88 -1.8
1,950,215 + EX28DRAFT_1944 0.88 -0.0
1,950,377 - +0.3
1,950,582 + EX28DRAFT_1945 0.32 -2.5
1,950,582 + EX28DRAFT_1945 0.32 -0.1
1,950,583 - EX28DRAFT_1945 0.32 +0.2
1,950,686 + EX28DRAFT_1945 0.46 +0.1
1,951,069 + -0.1
1,951,070 - +0.3
1,951,070 - +0.5
1,951,071 + +0.2
1,951,072 - -0.8
1,951,170 - EX28DRAFT_1946 0.12 -3.9
1,951,414 + EX28DRAFT_1946 0.46 -0.6
1,951,791 + -0.1
1,951,792 - +0.5
1,951,792 - -1.3
1,951,792 - +0.1
1,951,907 - +0.1
1,952,062 - -0.3
1,952,406 - EX28DRAFT_1947 0.31 -0.4
1,952,577 + EX28DRAFT_1947 0.42 -1.2
1,952,578 - EX28DRAFT_1947 0.42 +0.8
1,952,682 + EX28DRAFT_1947 0.49 -0.5
1,952,683 - EX28DRAFT_1947 0.49 +0.6

Or see this region's nucleotide sequence