Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1864

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1863 and EX28DRAFT_1864 are separated by 129 nucleotidesEX28DRAFT_1864 and EX28DRAFT_1865 are separated by 2 nucleotidesEX28DRAFT_1865 and EX28DRAFT_1866 are separated by 9 nucleotides EX28DRAFT_1863: EX28DRAFT_1863 - murein biosynthesis integral membrane protein MurJ, at 1,876,916 to 1,878,451 _1863 EX28DRAFT_1864: EX28DRAFT_1864 - Predicted dehydrogenases and related proteins, at 1,878,581 to 1,879,504 _1864 EX28DRAFT_1865: EX28DRAFT_1865 - Uncharacterized protein conserved in bacteria, at 1,879,507 to 1,880,163 _1865 EX28DRAFT_1866: EX28DRAFT_1866 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,880,173 to 1,880,757 _1866 Position (kb) 1878 1879 1880Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1878.556 kb on + strandat 1878.556 kb on + strandat 1878.556 kb on + strandat 1878.799 kb on + strand, within EX28DRAFT_1864at 1878.915 kb on + strand, within EX28DRAFT_1864at 1879.011 kb on + strand, within EX28DRAFT_1864at 1879.012 kb on - strand, within EX28DRAFT_1864at 1879.012 kb on - strand, within EX28DRAFT_1864at 1879.294 kb on + strand, within EX28DRAFT_1864at 1879.295 kb on - strand, within EX28DRAFT_1864at 1879.295 kb on - strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.436 kb on + strandat 1879.674 kb on + strand, within EX28DRAFT_1865at 1879.675 kb on - strand, within EX28DRAFT_1865at 1879.675 kb on - strand, within EX28DRAFT_1865at 1879.676 kb on + strand, within EX28DRAFT_1865at 1879.677 kb on - strand, within EX28DRAFT_1865at 1879.922 kb on + strand, within EX28DRAFT_1865at 1880.157 kb on - strandat 1880.157 kb on - strandat 1880.157 kb on - strandat 1880.250 kb on - strand, within EX28DRAFT_1866at 1880.322 kb on + strand, within EX28DRAFT_1866at 1880.323 kb on - strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.325 kb on - strand, within EX28DRAFT_1866at 1880.347 kb on - strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.365 kb on - strand, within EX28DRAFT_1866at 1880.365 kb on - strand, within EX28DRAFT_1866at 1880.394 kb on - strand, within EX28DRAFT_1866at 1880.442 kb on - strand, within EX28DRAFT_1866

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,878,556 + +2.2
1,878,556 + +0.3
1,878,556 + +0.8
1,878,799 + EX28DRAFT_1864 0.24 -2.9
1,878,915 + EX28DRAFT_1864 0.36 -0.4
1,879,011 + EX28DRAFT_1864 0.47 +1.2
1,879,012 - EX28DRAFT_1864 0.47 +0.1
1,879,012 - EX28DRAFT_1864 0.47 +0.2
1,879,294 + EX28DRAFT_1864 0.77 -1.1
1,879,295 - EX28DRAFT_1864 0.77 +0.5
1,879,295 - EX28DRAFT_1864 0.77 -0.1
1,879,372 + EX28DRAFT_1864 0.86 +0.8
1,879,372 + EX28DRAFT_1864 0.86 +1.6
1,879,372 + EX28DRAFT_1864 0.86 +0.4
1,879,372 + EX28DRAFT_1864 0.86 +0.7
1,879,436 + -0.6
1,879,674 + EX28DRAFT_1865 0.25 +1.5
1,879,675 - EX28DRAFT_1865 0.26 -0.2
1,879,675 - EX28DRAFT_1865 0.26 -3.5
1,879,676 + EX28DRAFT_1865 0.26 -0.2
1,879,677 - EX28DRAFT_1865 0.26 +0.7
1,879,922 + EX28DRAFT_1865 0.63 +0.1
1,880,157 - -0.3
1,880,157 - -0.0
1,880,157 - -0.6
1,880,250 - EX28DRAFT_1866 0.13 +0.3
1,880,322 + EX28DRAFT_1866 0.25 -0.3
1,880,323 - EX28DRAFT_1866 0.26 +0.0
1,880,324 + EX28DRAFT_1866 0.26 +0.2
1,880,324 + EX28DRAFT_1866 0.26 +0.7
1,880,324 + EX28DRAFT_1866 0.26 +0.4
1,880,325 - EX28DRAFT_1866 0.26 +0.3
1,880,347 - EX28DRAFT_1866 0.30 -0.2
1,880,364 + EX28DRAFT_1866 0.33 +0.1
1,880,364 + EX28DRAFT_1866 0.33 -0.6
1,880,364 + EX28DRAFT_1866 0.33 +0.2
1,880,364 + EX28DRAFT_1866 0.33 +0.8
1,880,365 - EX28DRAFT_1866 0.33 +0.9
1,880,365 - EX28DRAFT_1866 0.33 +1.0
1,880,394 - EX28DRAFT_1866 0.38 +0.5
1,880,442 - EX28DRAFT_1866 0.46 +0.2

Or see this region's nucleotide sequence