Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1804

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1803 and EX28DRAFT_1804 are separated by 300 nucleotidesEX28DRAFT_1804 and EX28DRAFT_1805 overlap by 17 nucleotidesEX28DRAFT_1805 and EX28DRAFT_1806 overlap by 4 nucleotides EX28DRAFT_1803: EX28DRAFT_1803 - peptidase T, at 1,817,402 to 1,818,625 _1803 EX28DRAFT_1804: EX28DRAFT_1804 - spermidine/putrescine ABC transporter ATP-binding subunit, at 1,818,926 to 1,820,011 _1804 EX28DRAFT_1805: EX28DRAFT_1805 - ABC-type spermidine/putrescine transport system, permease component I, at 1,819,995 to 1,820,852 _1805 EX28DRAFT_1806: EX28DRAFT_1806 - ABC-type spermidine/putrescine transport system, permease component II, at 1,820,849 to 1,821,640 _1806 Position (kb) 1818 1819 1820 1821Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1818.048 kb on + strand, within EX28DRAFT_1803at 1818.365 kb on - strand, within EX28DRAFT_1803at 1818.521 kb on + strandat 1818.572 kb on - strandat 1818.572 kb on - strandat 1818.572 kb on - strandat 1818.594 kb on + strandat 1818.615 kb on - strandat 1818.619 kb on + strandat 1818.620 kb on - strandat 1818.728 kb on + strandat 1818.729 kb on - strandat 1818.745 kb on - strandat 1818.750 kb on + strandat 1818.751 kb on - strandat 1818.756 kb on - strandat 1818.834 kb on + strandat 1818.834 kb on + strandat 1818.874 kb on - strandat 1819.150 kb on + strand, within EX28DRAFT_1804at 1819.167 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.445 kb on - strand, within EX28DRAFT_1804at 1819.581 kb on - strand, within EX28DRAFT_1804at 1819.630 kb on + strand, within EX28DRAFT_1804at 1819.631 kb on - strand, within EX28DRAFT_1804at 1819.705 kb on + strand, within EX28DRAFT_1804at 1819.839 kb on - strand, within EX28DRAFT_1804at 1820.152 kb on - strand, within EX28DRAFT_1805at 1820.152 kb on - strand, within EX28DRAFT_1805at 1820.379 kb on + strand, within EX28DRAFT_1805at 1820.417 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.469 kb on + strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.470 kb on - strand, within EX28DRAFT_1805at 1820.591 kb on + strand, within EX28DRAFT_1805at 1820.637 kb on - strand, within EX28DRAFT_1805at 1820.661 kb on + strand, within EX28DRAFT_1805at 1820.831 kb on + strandat 1820.892 kb on - strandat 1820.897 kb on + strandat 1820.898 kb on - strandat 1820.898 kb on - strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.903 kb on + strandat 1820.960 kb on - strand, within EX28DRAFT_1806at 1820.975 kb on - strand, within EX28DRAFT_1806at 1820.987 kb on + strand, within EX28DRAFT_1806

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,818,048 + EX28DRAFT_1803 0.53 -3.3
1,818,365 - EX28DRAFT_1803 0.79 +0.4
1,818,521 + +0.4
1,818,572 - +1.6
1,818,572 - +0.9
1,818,572 - +0.1
1,818,594 + -0.7
1,818,615 - -2.2
1,818,619 + +3.0
1,818,620 - +0.6
1,818,728 + -0.2
1,818,729 - -1.8
1,818,745 - -0.0
1,818,750 + +0.0
1,818,751 - +0.6
1,818,756 - +1.0
1,818,834 + -1.7
1,818,834 + +0.7
1,818,874 - +0.4
1,819,150 + EX28DRAFT_1804 0.21 +2.0
1,819,167 - EX28DRAFT_1804 0.22 -0.6
1,819,445 - EX28DRAFT_1804 0.48 +0.7
1,819,445 - EX28DRAFT_1804 0.48 +1.0
1,819,581 - EX28DRAFT_1804 0.60 +1.4
1,819,630 + EX28DRAFT_1804 0.65 -0.9
1,819,631 - EX28DRAFT_1804 0.65 +0.3
1,819,705 + EX28DRAFT_1804 0.72 +1.3
1,819,839 - EX28DRAFT_1804 0.84 +0.5
1,820,152 - EX28DRAFT_1805 0.18 +0.1
1,820,152 - EX28DRAFT_1805 0.18 -1.7
1,820,379 + EX28DRAFT_1805 0.45 +0.3
1,820,417 + EX28DRAFT_1805 0.49 -2.9
1,820,469 + EX28DRAFT_1805 0.55 -3.2
1,820,469 + EX28DRAFT_1805 0.55 +0.8
1,820,469 + EX28DRAFT_1805 0.55 +0.2
1,820,470 - EX28DRAFT_1805 0.55 +1.1
1,820,470 - EX28DRAFT_1805 0.55 +0.4
1,820,470 - EX28DRAFT_1805 0.55 -0.0
1,820,591 + EX28DRAFT_1805 0.69 -0.5
1,820,637 - EX28DRAFT_1805 0.75 -1.6
1,820,661 + EX28DRAFT_1805 0.78 +0.9
1,820,831 + -0.2
1,820,892 - +0.4
1,820,897 + +0.8
1,820,898 - -0.2
1,820,898 - +0.2
1,820,903 + -0.4
1,820,903 + +0.5
1,820,903 + +0.3
1,820,903 + +0.5
1,820,960 - EX28DRAFT_1806 0.14 -0.4
1,820,975 - EX28DRAFT_1806 0.16 +2.1
1,820,987 + EX28DRAFT_1806 0.17 +0.2

Or see this region's nucleotide sequence