Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1800

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1799 and EX28DRAFT_1800 are separated by 120 nucleotidesEX28DRAFT_1800 and EX28DRAFT_1801 are separated by 0 nucleotides EX28DRAFT_1799: EX28DRAFT_1799 - adenylosuccinate lyase, at 1,812,467 to 1,813,837 _1799 EX28DRAFT_1800: EX28DRAFT_1800 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,813,958 to 1,814,632 _1800 EX28DRAFT_1801: EX28DRAFT_1801 - Signal transduction histidine kinase, at 1,814,633 to 1,816,096 _1801 Position (kb) 1813 1814 1815Strain fitness (log2 ratio) -2 -1 0 1 2at 1813.835 kb on + strandat 1813.914 kb on + strandat 1813.915 kb on - strandat 1813.915 kb on - strandat 1813.915 kb on - strandat 1813.929 kb on + strandat 1813.930 kb on - strandat 1813.942 kb on + strandat 1813.943 kb on - strandat 1813.946 kb on + strandat 1813.995 kb on + strandat 1813.995 kb on + strandat 1814.072 kb on + strand, within EX28DRAFT_1800at 1814.072 kb on + strand, within EX28DRAFT_1800at 1814.073 kb on - strand, within EX28DRAFT_1800at 1814.073 kb on - strand, within EX28DRAFT_1800at 1814.075 kb on + strand, within EX28DRAFT_1800at 1814.076 kb on - strand, within EX28DRAFT_1800at 1814.076 kb on - strand, within EX28DRAFT_1800at 1814.115 kb on + strand, within EX28DRAFT_1800at 1814.116 kb on - strand, within EX28DRAFT_1800at 1814.116 kb on - strand, within EX28DRAFT_1800at 1814.146 kb on - strand, within EX28DRAFT_1800at 1814.146 kb on - strand, within EX28DRAFT_1800at 1814.272 kb on + strand, within EX28DRAFT_1800at 1814.272 kb on + strand, within EX28DRAFT_1800at 1814.272 kb on + strand, within EX28DRAFT_1800at 1814.273 kb on - strand, within EX28DRAFT_1800at 1814.307 kb on + strand, within EX28DRAFT_1800at 1814.338 kb on + strand, within EX28DRAFT_1800at 1814.339 kb on - strand, within EX28DRAFT_1800at 1814.383 kb on - strand, within EX28DRAFT_1800at 1814.423 kb on + strand, within EX28DRAFT_1800at 1814.424 kb on - strand, within EX28DRAFT_1800at 1814.424 kb on - strand, within EX28DRAFT_1800at 1814.525 kb on - strand, within EX28DRAFT_1800at 1814.590 kb on + strandat 1814.612 kb on + strandat 1814.686 kb on - strandat 1814.686 kb on - strandat 1814.750 kb on + strandat 1814.751 kb on - strandat 1814.810 kb on + strand, within EX28DRAFT_1801at 1814.810 kb on + strand, within EX28DRAFT_1801at 1814.812 kb on + strand, within EX28DRAFT_1801at 1814.897 kb on + strand, within EX28DRAFT_1801at 1814.916 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.197 kb on + strand, within EX28DRAFT_1801at 1815.198 kb on - strand, within EX28DRAFT_1801at 1815.198 kb on - strand, within EX28DRAFT_1801at 1815.198 kb on - strand, within EX28DRAFT_1801at 1815.198 kb on - strand, within EX28DRAFT_1801at 1815.198 kb on - strand, within EX28DRAFT_1801at 1815.200 kb on - strand, within EX28DRAFT_1801at 1815.200 kb on - strand, within EX28DRAFT_1801at 1815.221 kb on + strand, within EX28DRAFT_1801at 1815.221 kb on + strand, within EX28DRAFT_1801at 1815.222 kb on - strand, within EX28DRAFT_1801at 1815.222 kb on - strand, within EX28DRAFT_1801at 1815.431 kb on - strand, within EX28DRAFT_1801at 1815.431 kb on - strand, within EX28DRAFT_1801at 1815.431 kb on - strand, within EX28DRAFT_1801at 1815.434 kb on + strand, within EX28DRAFT_1801at 1815.435 kb on - strand, within EX28DRAFT_1801at 1815.435 kb on - strand, within EX28DRAFT_1801at 1815.496 kb on + strand, within EX28DRAFT_1801at 1815.496 kb on + strand, within EX28DRAFT_1801at 1815.496 kb on + strand, within EX28DRAFT_1801at 1815.572 kb on - strand, within EX28DRAFT_1801at 1815.572 kb on - strand, within EX28DRAFT_1801at 1815.593 kb on + strand, within EX28DRAFT_1801at 1815.593 kb on + strand, within EX28DRAFT_1801

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,813,835 + +1.0
1,813,914 + -0.1
1,813,915 - +0.1
1,813,915 - +0.2
1,813,915 - -0.1
1,813,929 + +0.0
1,813,930 - +0.4
1,813,942 + +0.4
1,813,943 - -0.3
1,813,946 + -0.2
1,813,995 + +0.2
1,813,995 + +0.1
1,814,072 + EX28DRAFT_1800 0.17 +0.3
1,814,072 + EX28DRAFT_1800 0.17 +0.5
1,814,073 - EX28DRAFT_1800 0.17 +0.3
1,814,073 - EX28DRAFT_1800 0.17 +0.5
1,814,075 + EX28DRAFT_1800 0.17 +0.5
1,814,076 - EX28DRAFT_1800 0.17 +1.3
1,814,076 - EX28DRAFT_1800 0.17 +0.9
1,814,115 + EX28DRAFT_1800 0.23 +1.3
1,814,116 - EX28DRAFT_1800 0.23 +1.2
1,814,116 - EX28DRAFT_1800 0.23 -0.6
1,814,146 - EX28DRAFT_1800 0.28 +0.8
1,814,146 - EX28DRAFT_1800 0.28 +1.5
1,814,272 + EX28DRAFT_1800 0.47 +1.7
1,814,272 + EX28DRAFT_1800 0.47 -1.5
1,814,272 + EX28DRAFT_1800 0.47 -0.3
1,814,273 - EX28DRAFT_1800 0.47 +0.2
1,814,307 + EX28DRAFT_1800 0.52 -0.1
1,814,338 + EX28DRAFT_1800 0.56 +0.7
1,814,339 - EX28DRAFT_1800 0.56 +1.4
1,814,383 - EX28DRAFT_1800 0.63 +1.6
1,814,423 + EX28DRAFT_1800 0.69 +0.5
1,814,424 - EX28DRAFT_1800 0.69 +0.6
1,814,424 - EX28DRAFT_1800 0.69 +0.7
1,814,525 - EX28DRAFT_1800 0.84 +0.4
1,814,590 + +0.1
1,814,612 + +0.2
1,814,686 - +1.6
1,814,686 - +1.1
1,814,750 + -0.6
1,814,751 - -1.4
1,814,810 + EX28DRAFT_1801 0.12 +2.0
1,814,810 + EX28DRAFT_1801 0.12 +0.4
1,814,812 + EX28DRAFT_1801 0.12 +0.6
1,814,897 + EX28DRAFT_1801 0.18 -0.3
1,814,916 + EX28DRAFT_1801 0.19 -0.5
1,815,197 + EX28DRAFT_1801 0.39 +0.5
1,815,197 + EX28DRAFT_1801 0.39 -2.2
1,815,197 + EX28DRAFT_1801 0.39 -0.2
1,815,197 + EX28DRAFT_1801 0.39 +0.4
1,815,197 + EX28DRAFT_1801 0.39 +0.1
1,815,197 + EX28DRAFT_1801 0.39 -2.4
1,815,197 + EX28DRAFT_1801 0.39 -1.2
1,815,198 - EX28DRAFT_1801 0.39 -0.5
1,815,198 - EX28DRAFT_1801 0.39 +0.9
1,815,198 - EX28DRAFT_1801 0.39 -0.3
1,815,198 - EX28DRAFT_1801 0.39 +0.2
1,815,198 - EX28DRAFT_1801 0.39 +0.8
1,815,200 - EX28DRAFT_1801 0.39 +0.4
1,815,200 - EX28DRAFT_1801 0.39 +0.9
1,815,221 + EX28DRAFT_1801 0.40 +0.8
1,815,221 + EX28DRAFT_1801 0.40 +0.4
1,815,222 - EX28DRAFT_1801 0.40 -0.0
1,815,222 - EX28DRAFT_1801 0.40 +1.0
1,815,431 - EX28DRAFT_1801 0.55 +1.4
1,815,431 - EX28DRAFT_1801 0.55 -0.7
1,815,431 - EX28DRAFT_1801 0.55 +0.6
1,815,434 + EX28DRAFT_1801 0.55 +0.8
1,815,435 - EX28DRAFT_1801 0.55 +0.5
1,815,435 - EX28DRAFT_1801 0.55 +1.1
1,815,496 + EX28DRAFT_1801 0.59 -0.3
1,815,496 + EX28DRAFT_1801 0.59 +1.4
1,815,496 + EX28DRAFT_1801 0.59 -0.2
1,815,572 - EX28DRAFT_1801 0.64 -1.8
1,815,572 - EX28DRAFT_1801 0.64 +0.1
1,815,593 + EX28DRAFT_1801 0.66 -0.7
1,815,593 + EX28DRAFT_1801 0.66 -1.2

Or see this region's nucleotide sequence