Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1799 and EX28DRAFT_1800 are separated by 120 nucleotides EX28DRAFT_1800 and EX28DRAFT_1801 are separated by 0 nucleotides
EX28DRAFT_1799: EX28DRAFT_1799 - adenylosuccinate lyase, at 1,812,467 to 1,813,837
_1799
EX28DRAFT_1800: EX28DRAFT_1800 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 1,813,958 to 1,814,632
_1800
EX28DRAFT_1801: EX28DRAFT_1801 - Signal transduction histidine kinase, at 1,814,633 to 1,816,096
_1801
Position (kb)
1813
1814
1815 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1813.835 kb on + strand at 1813.914 kb on + strand at 1813.915 kb on - strand at 1813.915 kb on - strand at 1813.915 kb on - strand at 1813.929 kb on + strand at 1813.930 kb on - strand at 1813.942 kb on + strand at 1813.943 kb on - strand at 1813.946 kb on + strand at 1813.995 kb on + strand at 1813.995 kb on + strand at 1814.072 kb on + strand, within EX28DRAFT_1800 at 1814.072 kb on + strand, within EX28DRAFT_1800 at 1814.073 kb on - strand, within EX28DRAFT_1800 at 1814.073 kb on - strand, within EX28DRAFT_1800 at 1814.075 kb on + strand, within EX28DRAFT_1800 at 1814.076 kb on - strand, within EX28DRAFT_1800 at 1814.076 kb on - strand, within EX28DRAFT_1800 at 1814.115 kb on + strand, within EX28DRAFT_1800 at 1814.116 kb on - strand, within EX28DRAFT_1800 at 1814.116 kb on - strand, within EX28DRAFT_1800 at 1814.146 kb on - strand, within EX28DRAFT_1800 at 1814.146 kb on - strand, within EX28DRAFT_1800 at 1814.272 kb on + strand, within EX28DRAFT_1800 at 1814.272 kb on + strand, within EX28DRAFT_1800 at 1814.272 kb on + strand, within EX28DRAFT_1800 at 1814.273 kb on - strand, within EX28DRAFT_1800 at 1814.307 kb on + strand, within EX28DRAFT_1800 at 1814.338 kb on + strand, within EX28DRAFT_1800 at 1814.339 kb on - strand, within EX28DRAFT_1800 at 1814.383 kb on - strand, within EX28DRAFT_1800 at 1814.423 kb on + strand, within EX28DRAFT_1800 at 1814.424 kb on - strand, within EX28DRAFT_1800 at 1814.424 kb on - strand, within EX28DRAFT_1800 at 1814.525 kb on - strand, within EX28DRAFT_1800 at 1814.590 kb on + strand at 1814.612 kb on + strand at 1814.686 kb on - strand at 1814.686 kb on - strand at 1814.750 kb on + strand at 1814.751 kb on - strand at 1814.810 kb on + strand, within EX28DRAFT_1801 at 1814.810 kb on + strand, within EX28DRAFT_1801 at 1814.812 kb on + strand, within EX28DRAFT_1801 at 1814.897 kb on + strand, within EX28DRAFT_1801 at 1814.916 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.197 kb on + strand, within EX28DRAFT_1801 at 1815.198 kb on - strand, within EX28DRAFT_1801 at 1815.198 kb on - strand, within EX28DRAFT_1801 at 1815.198 kb on - strand, within EX28DRAFT_1801 at 1815.198 kb on - strand, within EX28DRAFT_1801 at 1815.198 kb on - strand, within EX28DRAFT_1801 at 1815.200 kb on - strand, within EX28DRAFT_1801 at 1815.200 kb on - strand, within EX28DRAFT_1801 at 1815.221 kb on + strand, within EX28DRAFT_1801 at 1815.221 kb on + strand, within EX28DRAFT_1801 at 1815.222 kb on - strand, within EX28DRAFT_1801 at 1815.222 kb on - strand, within EX28DRAFT_1801 at 1815.431 kb on - strand, within EX28DRAFT_1801 at 1815.431 kb on - strand, within EX28DRAFT_1801 at 1815.431 kb on - strand, within EX28DRAFT_1801 at 1815.434 kb on + strand, within EX28DRAFT_1801 at 1815.435 kb on - strand, within EX28DRAFT_1801 at 1815.435 kb on - strand, within EX28DRAFT_1801 at 1815.496 kb on + strand, within EX28DRAFT_1801 at 1815.496 kb on + strand, within EX28DRAFT_1801 at 1815.496 kb on + strand, within EX28DRAFT_1801 at 1815.572 kb on - strand, within EX28DRAFT_1801 at 1815.572 kb on - strand, within EX28DRAFT_1801 at 1815.593 kb on + strand, within EX28DRAFT_1801 at 1815.593 kb on + strand, within EX28DRAFT_1801
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,813,835 + +1.0 1,813,914 + -0.1 1,813,915 - +0.1 1,813,915 - +0.2 1,813,915 - -0.1 1,813,929 + +0.0 1,813,930 - +0.4 1,813,942 + +0.4 1,813,943 - -0.3 1,813,946 + -0.2 1,813,995 + +0.2 1,813,995 + +0.1 1,814,072 + EX28DRAFT_1800 0.17 +0.3 1,814,072 + EX28DRAFT_1800 0.17 +0.5 1,814,073 - EX28DRAFT_1800 0.17 +0.3 1,814,073 - EX28DRAFT_1800 0.17 +0.5 1,814,075 + EX28DRAFT_1800 0.17 +0.5 1,814,076 - EX28DRAFT_1800 0.17 +1.3 1,814,076 - EX28DRAFT_1800 0.17 +0.9 1,814,115 + EX28DRAFT_1800 0.23 +1.3 1,814,116 - EX28DRAFT_1800 0.23 +1.2 1,814,116 - EX28DRAFT_1800 0.23 -0.6 1,814,146 - EX28DRAFT_1800 0.28 +0.8 1,814,146 - EX28DRAFT_1800 0.28 +1.5 1,814,272 + EX28DRAFT_1800 0.47 +1.7 1,814,272 + EX28DRAFT_1800 0.47 -1.5 1,814,272 + EX28DRAFT_1800 0.47 -0.3 1,814,273 - EX28DRAFT_1800 0.47 +0.2 1,814,307 + EX28DRAFT_1800 0.52 -0.1 1,814,338 + EX28DRAFT_1800 0.56 +0.7 1,814,339 - EX28DRAFT_1800 0.56 +1.4 1,814,383 - EX28DRAFT_1800 0.63 +1.6 1,814,423 + EX28DRAFT_1800 0.69 +0.5 1,814,424 - EX28DRAFT_1800 0.69 +0.6 1,814,424 - EX28DRAFT_1800 0.69 +0.7 1,814,525 - EX28DRAFT_1800 0.84 +0.4 1,814,590 + +0.1 1,814,612 + +0.2 1,814,686 - +1.6 1,814,686 - +1.1 1,814,750 + -0.6 1,814,751 - -1.4 1,814,810 + EX28DRAFT_1801 0.12 +2.0 1,814,810 + EX28DRAFT_1801 0.12 +0.4 1,814,812 + EX28DRAFT_1801 0.12 +0.6 1,814,897 + EX28DRAFT_1801 0.18 -0.3 1,814,916 + EX28DRAFT_1801 0.19 -0.5 1,815,197 + EX28DRAFT_1801 0.39 +0.5 1,815,197 + EX28DRAFT_1801 0.39 -2.2 1,815,197 + EX28DRAFT_1801 0.39 -0.2 1,815,197 + EX28DRAFT_1801 0.39 +0.4 1,815,197 + EX28DRAFT_1801 0.39 +0.1 1,815,197 + EX28DRAFT_1801 0.39 -2.4 1,815,197 + EX28DRAFT_1801 0.39 -1.2 1,815,198 - EX28DRAFT_1801 0.39 -0.5 1,815,198 - EX28DRAFT_1801 0.39 +0.9 1,815,198 - EX28DRAFT_1801 0.39 -0.3 1,815,198 - EX28DRAFT_1801 0.39 +0.2 1,815,198 - EX28DRAFT_1801 0.39 +0.8 1,815,200 - EX28DRAFT_1801 0.39 +0.4 1,815,200 - EX28DRAFT_1801 0.39 +0.9 1,815,221 + EX28DRAFT_1801 0.40 +0.8 1,815,221 + EX28DRAFT_1801 0.40 +0.4 1,815,222 - EX28DRAFT_1801 0.40 -0.0 1,815,222 - EX28DRAFT_1801 0.40 +1.0 1,815,431 - EX28DRAFT_1801 0.55 +1.4 1,815,431 - EX28DRAFT_1801 0.55 -0.7 1,815,431 - EX28DRAFT_1801 0.55 +0.6 1,815,434 + EX28DRAFT_1801 0.55 +0.8 1,815,435 - EX28DRAFT_1801 0.55 +0.5 1,815,435 - EX28DRAFT_1801 0.55 +1.1 1,815,496 + EX28DRAFT_1801 0.59 -0.3 1,815,496 + EX28DRAFT_1801 0.59 +1.4 1,815,496 + EX28DRAFT_1801 0.59 -0.2 1,815,572 - EX28DRAFT_1801 0.64 -1.8 1,815,572 - EX28DRAFT_1801 0.64 +0.1 1,815,593 + EX28DRAFT_1801 0.66 -0.7 1,815,593 + EX28DRAFT_1801 0.66 -1.2
Or see this region's nucleotide sequence