Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1787

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1786 and EX28DRAFT_1787 are separated by 274 nucleotidesEX28DRAFT_1787 and EX28DRAFT_1788 are separated by 216 nucleotidesEX28DRAFT_1788 and EX28DRAFT_1789 are separated by 5 nucleotides EX28DRAFT_1786: EX28DRAFT_1786 - diguanylate cyclase (GGDEF) domain, at 1,800,366 to 1,801,436 _1786 EX28DRAFT_1787: EX28DRAFT_1787 - Predicted membrane protein, at 1,801,711 to 1,801,959 _1787 EX28DRAFT_1788: EX28DRAFT_1788 - RNA, at 1,802,176 to 1,802,239 _1788 EX28DRAFT_1789: EX28DRAFT_1789 - diguanylate cyclase (GGDEF) domain, at 1,802,245 to 1,803,717 _1789 Position (kb) 1801 1802Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1800.732 kb on + strand, within EX28DRAFT_1786at 1800.732 kb on + strand, within EX28DRAFT_1786at 1801.019 kb on + strand, within EX28DRAFT_1786at 1801.020 kb on - strand, within EX28DRAFT_1786at 1801.149 kb on - strand, within EX28DRAFT_1786at 1801.259 kb on + strand, within EX28DRAFT_1786at 1801.259 kb on + strand, within EX28DRAFT_1786at 1801.364 kb on - strandat 1801.386 kb on + strandat 1801.387 kb on - strandat 1801.394 kb on + strandat 1801.578 kb on + strandat 1801.601 kb on + strandat 1801.666 kb on + strandat 1801.819 kb on - strand, within EX28DRAFT_1787at 1801.819 kb on - strand, within EX28DRAFT_1787at 1801.858 kb on + strand, within EX28DRAFT_1787at 1801.859 kb on - strand, within EX28DRAFT_1787at 1801.938 kb on + strandat 1801.959 kb on + strandat 1801.975 kb on - strandat 1801.989 kb on + strandat 1801.989 kb on + strandat 1802.012 kb on + strandat 1802.249 kb on - strandat 1802.317 kb on - strandat 1802.323 kb on - strandat 1802.323 kb on - strandat 1802.323 kb on - strandat 1802.401 kb on - strand, within EX28DRAFT_1789at 1802.485 kb on + strand, within EX28DRAFT_1789at 1802.488 kb on + strand, within EX28DRAFT_1789at 1802.533 kb on - strand, within EX28DRAFT_1789at 1802.608 kb on - strand, within EX28DRAFT_1789at 1802.769 kb on + strand, within EX28DRAFT_1789at 1802.770 kb on - strand, within EX28DRAFT_1789at 1802.770 kb on - strand, within EX28DRAFT_1789at 1802.948 kb on + strand, within EX28DRAFT_1789at 1802.949 kb on - strand, within EX28DRAFT_1789at 1802.954 kb on + strand, within EX28DRAFT_1789at 1802.955 kb on - strand, within EX28DRAFT_1789

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,800,732 + EX28DRAFT_1786 0.34 -0.7
1,800,732 + EX28DRAFT_1786 0.34 +0.5
1,801,019 + EX28DRAFT_1786 0.61 -0.2
1,801,020 - EX28DRAFT_1786 0.61 -0.3
1,801,149 - EX28DRAFT_1786 0.73 +0.5
1,801,259 + EX28DRAFT_1786 0.83 +0.4
1,801,259 + EX28DRAFT_1786 0.83 +0.5
1,801,364 - -0.3
1,801,386 + +0.2
1,801,387 - +0.5
1,801,394 + -0.4
1,801,578 + +0.1
1,801,601 + -0.2
1,801,666 + -0.5
1,801,819 - EX28DRAFT_1787 0.43 +1.0
1,801,819 - EX28DRAFT_1787 0.43 +0.4
1,801,858 + EX28DRAFT_1787 0.59 -0.3
1,801,859 - EX28DRAFT_1787 0.59 +1.1
1,801,938 + -0.0
1,801,959 + +0.3
1,801,975 - +3.1
1,801,989 + +2.2
1,801,989 + -1.6
1,802,012 + -0.0
1,802,249 - -0.2
1,802,317 - -0.1
1,802,323 - -0.4
1,802,323 - +1.1
1,802,323 - +1.8
1,802,401 - EX28DRAFT_1789 0.11 +1.3
1,802,485 + EX28DRAFT_1789 0.16 -1.6
1,802,488 + EX28DRAFT_1789 0.16 -0.4
1,802,533 - EX28DRAFT_1789 0.20 -1.7
1,802,608 - EX28DRAFT_1789 0.25 -0.4
1,802,769 + EX28DRAFT_1789 0.36 -0.6
1,802,770 - EX28DRAFT_1789 0.36 -0.4
1,802,770 - EX28DRAFT_1789 0.36 -2.2
1,802,948 + EX28DRAFT_1789 0.48 +0.4
1,802,949 - EX28DRAFT_1789 0.48 +0.2
1,802,954 + EX28DRAFT_1789 0.48 -0.2
1,802,955 - EX28DRAFT_1789 0.48 +0.6

Or see this region's nucleotide sequence