Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1786 and EX28DRAFT_1787 are separated by 274 nucleotides EX28DRAFT_1787 and EX28DRAFT_1788 are separated by 216 nucleotides EX28DRAFT_1788 and EX28DRAFT_1789 are separated by 5 nucleotides
EX28DRAFT_1786: EX28DRAFT_1786 - diguanylate cyclase (GGDEF) domain, at 1,800,366 to 1,801,436
_1786
EX28DRAFT_1787: EX28DRAFT_1787 - Predicted membrane protein, at 1,801,711 to 1,801,959
_1787
EX28DRAFT_1788: EX28DRAFT_1788 - RNA, at 1,802,176 to 1,802,239
_1788
EX28DRAFT_1789: EX28DRAFT_1789 - diguanylate cyclase (GGDEF) domain, at 1,802,245 to 1,803,717
_1789
Position (kb)
1801
1802 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1800.732 kb on + strand, within EX28DRAFT_1786 at 1800.732 kb on + strand, within EX28DRAFT_1786 at 1801.019 kb on + strand, within EX28DRAFT_1786 at 1801.020 kb on - strand, within EX28DRAFT_1786 at 1801.149 kb on - strand, within EX28DRAFT_1786 at 1801.259 kb on + strand, within EX28DRAFT_1786 at 1801.259 kb on + strand, within EX28DRAFT_1786 at 1801.364 kb on - strand at 1801.386 kb on + strand at 1801.387 kb on - strand at 1801.394 kb on + strand at 1801.578 kb on + strand at 1801.601 kb on + strand at 1801.666 kb on + strand at 1801.819 kb on - strand, within EX28DRAFT_1787 at 1801.819 kb on - strand, within EX28DRAFT_1787 at 1801.858 kb on + strand, within EX28DRAFT_1787 at 1801.859 kb on - strand, within EX28DRAFT_1787 at 1801.938 kb on + strand at 1801.959 kb on + strand at 1801.975 kb on - strand at 1801.989 kb on + strand at 1801.989 kb on + strand at 1802.012 kb on + strand at 1802.249 kb on - strand at 1802.317 kb on - strand at 1802.323 kb on - strand at 1802.323 kb on - strand at 1802.323 kb on - strand at 1802.401 kb on - strand, within EX28DRAFT_1789 at 1802.485 kb on + strand, within EX28DRAFT_1789 at 1802.488 kb on + strand, within EX28DRAFT_1789 at 1802.533 kb on - strand, within EX28DRAFT_1789 at 1802.608 kb on - strand, within EX28DRAFT_1789 at 1802.769 kb on + strand, within EX28DRAFT_1789 at 1802.770 kb on - strand, within EX28DRAFT_1789 at 1802.770 kb on - strand, within EX28DRAFT_1789 at 1802.948 kb on + strand, within EX28DRAFT_1789 at 1802.949 kb on - strand, within EX28DRAFT_1789 at 1802.954 kb on + strand, within EX28DRAFT_1789 at 1802.955 kb on - strand, within EX28DRAFT_1789
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,800,732 + EX28DRAFT_1786 0.34 -0.7 1,800,732 + EX28DRAFT_1786 0.34 +0.5 1,801,019 + EX28DRAFT_1786 0.61 -0.2 1,801,020 - EX28DRAFT_1786 0.61 -0.3 1,801,149 - EX28DRAFT_1786 0.73 +0.5 1,801,259 + EX28DRAFT_1786 0.83 +0.4 1,801,259 + EX28DRAFT_1786 0.83 +0.5 1,801,364 - -0.3 1,801,386 + +0.2 1,801,387 - +0.5 1,801,394 + -0.4 1,801,578 + +0.1 1,801,601 + -0.2 1,801,666 + -0.5 1,801,819 - EX28DRAFT_1787 0.43 +1.0 1,801,819 - EX28DRAFT_1787 0.43 +0.4 1,801,858 + EX28DRAFT_1787 0.59 -0.3 1,801,859 - EX28DRAFT_1787 0.59 +1.1 1,801,938 + -0.0 1,801,959 + +0.3 1,801,975 - +3.1 1,801,989 + +2.2 1,801,989 + -1.6 1,802,012 + -0.0 1,802,249 - -0.2 1,802,317 - -0.1 1,802,323 - -0.4 1,802,323 - +1.1 1,802,323 - +1.8 1,802,401 - EX28DRAFT_1789 0.11 +1.3 1,802,485 + EX28DRAFT_1789 0.16 -1.6 1,802,488 + EX28DRAFT_1789 0.16 -0.4 1,802,533 - EX28DRAFT_1789 0.20 -1.7 1,802,608 - EX28DRAFT_1789 0.25 -0.4 1,802,769 + EX28DRAFT_1789 0.36 -0.6 1,802,770 - EX28DRAFT_1789 0.36 -0.4 1,802,770 - EX28DRAFT_1789 0.36 -2.2 1,802,948 + EX28DRAFT_1789 0.48 +0.4 1,802,949 - EX28DRAFT_1789 0.48 +0.2 1,802,954 + EX28DRAFT_1789 0.48 -0.2 1,802,955 - EX28DRAFT_1789 0.48 +0.6
Or see this region's nucleotide sequence