Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1738 and EX28DRAFT_1739 are separated by 109 nucleotides EX28DRAFT_1739 and EX28DRAFT_1740 are separated by 29 nucleotides EX28DRAFT_1740 and EX28DRAFT_1741 are separated by 47 nucleotides
EX28DRAFT_1738: EX28DRAFT_1738 - Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases, at 1,753,400 to 1,754,755
_1738
EX28DRAFT_1739: EX28DRAFT_1739 - Helix-turn-helix domain/Cupin domain, at 1,754,865 to 1,755,683
_1739
EX28DRAFT_1740: EX28DRAFT_1740 - Phosphotransferase system cellobiose-specific component IIA, at 1,755,713 to 1,756,060
_1740
EX28DRAFT_1741: EX28DRAFT_1741 - phosphotransferase system, cellobiose specific, IIC component, at 1,756,108 to 1,757,466
_1741
Position (kb) 1755
1756
1757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1754.796 kb on - strand at 1754.796 kb on - strand at 1754.798 kb on - strand at 1754.871 kb on - strand at 1754.871 kb on - strand at 1754.871 kb on - strand at 1754.989 kb on + strand, within EX28DRAFT_1739 at 1754.990 kb on - strand, within EX28DRAFT_1739 at 1755.122 kb on + strand, within EX28DRAFT_1739 at 1755.155 kb on + strand, within EX28DRAFT_1739 at 1755.251 kb on - strand, within EX28DRAFT_1739 at 1755.333 kb on - strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.394 kb on + strand, within EX28DRAFT_1739 at 1755.395 kb on - strand, within EX28DRAFT_1739 at 1755.575 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.578 kb on - strand, within EX28DRAFT_1739 at 1755.623 kb on + strand at 1755.954 kb on + strand, within EX28DRAFT_1740 at 1756.042 kb on + strand at 1756.109 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.199 kb on + strand at 1756.200 kb on - strand at 1756.200 kb on - strand at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.337 kb on + strand, within EX28DRAFT_1741 at 1756.338 kb on - strand, within EX28DRAFT_1741 at 1756.563 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.565 kb on + strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.566 kb on - strand, within EX28DRAFT_1741 at 1756.681 kb on - strand, within EX28DRAFT_1741 at 1756.758 kb on - strand, within EX28DRAFT_1741 at 1756.803 kb on + strand, within EX28DRAFT_1741 at 1756.804 kb on - strand, within EX28DRAFT_1741 at 1756.882 kb on - strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.971 kb on + strand, within EX28DRAFT_1741 at 1756.972 kb on - strand, within EX28DRAFT_1741 at 1757.058 kb on - strand, within EX28DRAFT_1741
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,754,796 - -0.9 1,754,796 - +0.6 1,754,798 - -0.9 1,754,871 - -0.4 1,754,871 - +0.0 1,754,871 - +0.2 1,754,989 + EX28DRAFT_1739 0.15 -0.3 1,754,990 - EX28DRAFT_1739 0.15 -0.6 1,755,122 + EX28DRAFT_1739 0.31 -0.2 1,755,155 + EX28DRAFT_1739 0.35 +0.4 1,755,251 - EX28DRAFT_1739 0.47 +0.3 1,755,333 - EX28DRAFT_1739 0.57 +0.4 1,755,394 + EX28DRAFT_1739 0.65 -2.8 1,755,394 + EX28DRAFT_1739 0.65 -0.2 1,755,395 - EX28DRAFT_1739 0.65 -0.0 1,755,575 - EX28DRAFT_1739 0.87 -0.3 1,755,578 - EX28DRAFT_1739 0.87 +0.3 1,755,578 - EX28DRAFT_1739 0.87 -0.4 1,755,623 + -2.3 1,755,954 + EX28DRAFT_1740 0.69 -1.3 1,756,042 + +1.9 1,756,109 + +0.2 1,756,199 + +0.3 1,756,199 + -3.0 1,756,199 + -0.4 1,756,199 + +0.7 1,756,200 - +0.6 1,756,200 - -0.6 1,756,337 + EX28DRAFT_1741 0.17 -1.9 1,756,337 + EX28DRAFT_1741 0.17 +0.9 1,756,338 - EX28DRAFT_1741 0.17 +0.1 1,756,563 + EX28DRAFT_1741 0.33 -0.1 1,756,565 + EX28DRAFT_1741 0.34 +0.1 1,756,565 + EX28DRAFT_1741 0.34 -1.1 1,756,565 + EX28DRAFT_1741 0.34 -0.4 1,756,565 + EX28DRAFT_1741 0.34 +0.9 1,756,566 - EX28DRAFT_1741 0.34 +0.1 1,756,566 - EX28DRAFT_1741 0.34 -1.2 1,756,681 - EX28DRAFT_1741 0.42 -0.7 1,756,758 - EX28DRAFT_1741 0.48 -0.2 1,756,803 + EX28DRAFT_1741 0.51 -0.1 1,756,804 - EX28DRAFT_1741 0.51 -1.1 1,756,882 - EX28DRAFT_1741 0.57 -1.4 1,756,971 + EX28DRAFT_1741 0.64 -0.5 1,756,971 + EX28DRAFT_1741 0.64 -0.8 1,756,971 + EX28DRAFT_1741 0.64 -0.4 1,756,972 - EX28DRAFT_1741 0.64 -0.2 1,757,058 - EX28DRAFT_1741 0.70 -0.4
Or see this region's nucleotide sequence