Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1397

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1395 and EX28DRAFT_1396 are separated by 337 nucleotidesEX28DRAFT_1396 and EX28DRAFT_1397 are separated by 64 nucleotidesEX28DRAFT_1397 and EX28DRAFT_1398 are separated by 267 nucleotidesEX28DRAFT_1398 and EX28DRAFT_1399 are separated by 52 nucleotides EX28DRAFT_1395: EX28DRAFT_1395 - Putative NADPH-quinone reductase (modulator of drug activity B), at 1,406,658 to 1,407,257 _1395 EX28DRAFT_1396: EX28DRAFT_1396 - Amidases related to nicotinamidase, at 1,407,595 to 1,408,134 _1396 EX28DRAFT_1397: EX28DRAFT_1397 - cupin fold metalloprotein, WbuC family, at 1,408,199 to 1,408,675 _1397 EX28DRAFT_1398: EX28DRAFT_1398 - hypothetical protein, at 1,408,943 to 1,409,413 _1398 EX28DRAFT_1399: EX28DRAFT_1399 - Transcriptional regulator, at 1,409,466 to 1,410,389 _1399 Position (kb) 1408 1409Strain fitness (log2 ratio) -1 0 1at 1407.251 kb on + strandat 1407.369 kb on + strandat 1407.370 kb on - strandat 1407.379 kb on + strandat 1407.385 kb on + strandat 1407.386 kb on - strandat 1407.386 kb on - strandat 1407.393 kb on + strandat 1407.393 kb on + strandat 1407.404 kb on - strandat 1407.406 kb on - strandat 1407.417 kb on + strandat 1407.438 kb on - strandat 1407.513 kb on - strandat 1407.513 kb on - strandat 1407.557 kb on + strandat 1407.557 kb on + strandat 1407.558 kb on - strandat 1407.558 kb on - strandat 1407.617 kb on + strandat 1407.621 kb on + strandat 1408.012 kb on - strand, within EX28DRAFT_1396at 1408.120 kb on - strandat 1408.422 kb on - strand, within EX28DRAFT_1397at 1408.422 kb on - strand, within EX28DRAFT_1397at 1408.533 kb on + strand, within EX28DRAFT_1397at 1408.533 kb on + strand, within EX28DRAFT_1397at 1408.533 kb on + strand, within EX28DRAFT_1397at 1408.534 kb on - strand, within EX28DRAFT_1397at 1408.534 kb on - strand, within EX28DRAFT_1397at 1408.534 kb on - strand, within EX28DRAFT_1397at 1408.534 kb on - strand, within EX28DRAFT_1397at 1408.537 kb on + strand, within EX28DRAFT_1397at 1408.592 kb on + strand, within EX28DRAFT_1397at 1408.593 kb on - strand, within EX28DRAFT_1397at 1408.593 kb on - strand, within EX28DRAFT_1397at 1408.664 kb on - strandat 1408.677 kb on + strandat 1408.677 kb on + strandat 1408.677 kb on + strandat 1408.677 kb on + strandat 1408.678 kb on - strandat 1408.731 kb on + strandat 1408.731 kb on + strandat 1408.731 kb on + strandat 1408.732 kb on - strandat 1408.827 kb on - strandat 1408.968 kb on + strandat 1409.038 kb on + strand, within EX28DRAFT_1398at 1409.249 kb on + strand, within EX28DRAFT_1398at 1409.249 kb on + strand, within EX28DRAFT_1398at 1409.447 kb on + strandat 1409.558 kb on + strandat 1409.597 kb on - strand, within EX28DRAFT_1399at 1409.597 kb on - strand, within EX28DRAFT_1399

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,407,251 + -0.3
1,407,369 + +0.3
1,407,370 - +0.5
1,407,379 + +0.9
1,407,385 + -0.1
1,407,386 - +0.5
1,407,386 - +0.7
1,407,393 + +0.7
1,407,393 + +0.1
1,407,404 - +0.1
1,407,406 - +0.3
1,407,417 + -0.9
1,407,438 - -1.2
1,407,513 - +0.0
1,407,513 - +0.1
1,407,557 + -0.6
1,407,557 + +0.6
1,407,558 - +0.5
1,407,558 - +0.6
1,407,617 + +0.2
1,407,621 + -0.2
1,408,012 - EX28DRAFT_1396 0.77 -1.5
1,408,120 - +0.6
1,408,422 - EX28DRAFT_1397 0.47 +0.8
1,408,422 - EX28DRAFT_1397 0.47 +0.6
1,408,533 + EX28DRAFT_1397 0.70 +0.3
1,408,533 + EX28DRAFT_1397 0.70 +0.4
1,408,533 + EX28DRAFT_1397 0.70 +0.2
1,408,534 - EX28DRAFT_1397 0.70 +0.0
1,408,534 - EX28DRAFT_1397 0.70 +0.9
1,408,534 - EX28DRAFT_1397 0.70 -0.4
1,408,534 - EX28DRAFT_1397 0.70 +0.9
1,408,537 + EX28DRAFT_1397 0.71 +0.4
1,408,592 + EX28DRAFT_1397 0.82 +0.6
1,408,593 - EX28DRAFT_1397 0.83 +1.0
1,408,593 - EX28DRAFT_1397 0.83 -0.9
1,408,664 - +0.2
1,408,677 + -0.5
1,408,677 + -0.5
1,408,677 + -0.9
1,408,677 + -0.1
1,408,678 - -0.1
1,408,731 + +0.1
1,408,731 + -0.6
1,408,731 + +1.4
1,408,732 - +0.5
1,408,827 - +0.3
1,408,968 + -0.6
1,409,038 + EX28DRAFT_1398 0.20 -0.0
1,409,249 + EX28DRAFT_1398 0.65 +1.4
1,409,249 + EX28DRAFT_1398 0.65 +0.5
1,409,447 + +0.4
1,409,558 + +0.1
1,409,597 - EX28DRAFT_1399 0.14 -0.1
1,409,597 - EX28DRAFT_1399 0.14 -0.5

Or see this region's nucleotide sequence