Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1312

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1311 and EX28DRAFT_1312 are separated by 185 nucleotidesEX28DRAFT_1312 and EX28DRAFT_1313 are separated by 3 nucleotidesEX28DRAFT_1313 and EX28DRAFT_1314 are separated by 109 nucleotides EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397 _1311 EX28DRAFT_1312: EX28DRAFT_1312 - Protein of unknown function (DUF1019), at 1,316,583 to 1,317,125 _1312 EX28DRAFT_1313: EX28DRAFT_1313 - Cro, at 1,317,129 to 1,317,329 _1313 EX28DRAFT_1314: EX28DRAFT_1314 - SOS-response transcriptional repressors (RecA-mediated autopeptidases), at 1,317,439 to 1,318,155 _1314 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -1 0 1 2at 1315.604 kb on + strand, within EX28DRAFT_1311at 1315.640 kb on - strand, within EX28DRAFT_1311at 1315.666 kb on - strand, within EX28DRAFT_1311at 1315.784 kb on + strand, within EX28DRAFT_1311at 1315.870 kb on - strand, within EX28DRAFT_1311at 1315.870 kb on - strand, within EX28DRAFT_1311at 1315.878 kb on + strand, within EX28DRAFT_1311at 1315.879 kb on - strand, within EX28DRAFT_1311at 1315.890 kb on + strand, within EX28DRAFT_1311at 1315.891 kb on - strand, within EX28DRAFT_1311at 1315.915 kb on + strand, within EX28DRAFT_1311at 1315.975 kb on - strand, within EX28DRAFT_1311at 1316.010 kb on + strand, within EX28DRAFT_1311at 1316.011 kb on - strand, within EX28DRAFT_1311at 1316.064 kb on - strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311at 1316.191 kb on + strand, within EX28DRAFT_1311at 1316.439 kb on - strandat 1316.458 kb on + strandat 1316.486 kb on + strandat 1316.661 kb on + strand, within EX28DRAFT_1312at 1316.663 kb on + strand, within EX28DRAFT_1312at 1316.673 kb on + strand, within EX28DRAFT_1312at 1317.056 kb on + strand, within EX28DRAFT_1312at 1317.056 kb on + strand, within EX28DRAFT_1312at 1317.109 kb on + strandat 1317.152 kb on + strand, within EX28DRAFT_1313at 1317.307 kb on + strand, within EX28DRAFT_1313at 1317.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,315,604 + EX28DRAFT_1311 0.18 +0.0
1,315,640 - EX28DRAFT_1311 0.22 -1.4
1,315,666 - EX28DRAFT_1311 0.24 +0.4
1,315,784 + EX28DRAFT_1311 0.36 +0.5
1,315,870 - EX28DRAFT_1311 0.45 +0.9
1,315,870 - EX28DRAFT_1311 0.45 -1.3
1,315,878 + EX28DRAFT_1311 0.46 -0.4
1,315,879 - EX28DRAFT_1311 0.46 -1.4
1,315,890 + EX28DRAFT_1311 0.47 -0.3
1,315,891 - EX28DRAFT_1311 0.48 -0.5
1,315,915 + EX28DRAFT_1311 0.50 +0.2
1,315,975 - EX28DRAFT_1311 0.56 -0.2
1,316,010 + EX28DRAFT_1311 0.60 -1.2
1,316,011 - EX28DRAFT_1311 0.60 +0.5
1,316,064 - EX28DRAFT_1311 0.65 -1.3
1,316,191 + EX28DRAFT_1311 0.79 +0.7
1,316,191 + EX28DRAFT_1311 0.79 -0.3
1,316,191 + EX28DRAFT_1311 0.79 -0.4
1,316,439 - -0.3
1,316,458 + -0.4
1,316,486 + +0.6
1,316,661 + EX28DRAFT_1312 0.14 +0.8
1,316,663 + EX28DRAFT_1312 0.15 +0.3
1,316,673 + EX28DRAFT_1312 0.17 +1.5
1,317,056 + EX28DRAFT_1312 0.87 +0.2
1,317,056 + EX28DRAFT_1312 0.87 +2.3
1,317,109 + -0.7
1,317,152 + EX28DRAFT_1313 0.11 +0.9
1,317,307 + EX28DRAFT_1313 0.89 +0.2
1,317,368 + -0.8

Or see this region's nucleotide sequence