Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1021

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1019 and EX28DRAFT_1020 are separated by 0 nucleotidesEX28DRAFT_1020 and EX28DRAFT_1021 are separated by 128 nucleotidesEX28DRAFT_1021 and EX28DRAFT_1022 overlap by 1 nucleotides EX28DRAFT_1019: EX28DRAFT_1019 - Putative hemolysin, at 1,027,488 to 1,027,754 _1019 EX28DRAFT_1020: EX28DRAFT_1020 - Heat shock protein, at 1,027,755 to 1,028,192 _1020 EX28DRAFT_1021: EX28DRAFT_1021 - Protein of unknown function (DUF2474), at 1,028,321 to 1,028,449 _1021 EX28DRAFT_1022: EX28DRAFT_1022 - cytochrome d oxidase, subunit II (cydB), at 1,028,449 to 1,029,459 _1022 Position (kb) 1028 1029Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1027.356 kb on + strandat 1027.406 kb on + strandat 1027.406 kb on + strandat 1027.449 kb on - strandat 1027.449 kb on - strandat 1027.451 kb on + strandat 1027.451 kb on + strandat 1027.452 kb on - strandat 1027.457 kb on + strandat 1027.457 kb on + strandat 1027.458 kb on - strandat 1027.458 kb on - strandat 1027.458 kb on - strandat 1027.539 kb on - strand, within EX28DRAFT_1019at 1027.712 kb on + strand, within EX28DRAFT_1019at 1027.749 kb on + strandat 1027.757 kb on - strandat 1027.769 kb on + strandat 1027.804 kb on - strand, within EX28DRAFT_1020at 1027.920 kb on - strand, within EX28DRAFT_1020at 1027.925 kb on + strand, within EX28DRAFT_1020at 1027.925 kb on + strand, within EX28DRAFT_1020at 1027.926 kb on - strand, within EX28DRAFT_1020at 1027.995 kb on - strand, within EX28DRAFT_1020at 1027.995 kb on - strand, within EX28DRAFT_1020at 1028.009 kb on + strand, within EX28DRAFT_1020at 1028.102 kb on + strand, within EX28DRAFT_1020at 1028.102 kb on + strand, within EX28DRAFT_1020at 1028.138 kb on + strand, within EX28DRAFT_1020at 1028.139 kb on - strand, within EX28DRAFT_1020at 1028.208 kb on - strandat 1028.210 kb on - strandat 1028.210 kb on - strandat 1028.213 kb on + strandat 1028.266 kb on + strandat 1028.368 kb on + strand, within EX28DRAFT_1021at 1028.369 kb on - strand, within EX28DRAFT_1021at 1028.424 kb on - strand, within EX28DRAFT_1021at 1028.492 kb on + strandat 1028.493 kb on - strandat 1028.493 kb on - strandat 1028.495 kb on + strandat 1028.496 kb on - strandat 1028.510 kb on + strandat 1028.510 kb on + strandat 1028.511 kb on - strandat 1028.553 kb on + strand, within EX28DRAFT_1022at 1028.553 kb on + strand, within EX28DRAFT_1022at 1028.611 kb on - strand, within EX28DRAFT_1022at 1028.614 kb on - strand, within EX28DRAFT_1022at 1028.614 kb on - strand, within EX28DRAFT_1022at 1028.657 kb on - strand, within EX28DRAFT_1022at 1028.723 kb on + strand, within EX28DRAFT_1022at 1028.765 kb on + strand, within EX28DRAFT_1022at 1028.863 kb on + strand, within EX28DRAFT_1022at 1028.931 kb on + strand, within EX28DRAFT_1022at 1028.932 kb on - strand, within EX28DRAFT_1022at 1029.017 kb on + strand, within EX28DRAFT_1022at 1029.017 kb on + strand, within EX28DRAFT_1022at 1029.017 kb on - strand, within EX28DRAFT_1022at 1029.177 kb on + strand, within EX28DRAFT_1022at 1029.177 kb on + strand, within EX28DRAFT_1022at 1029.178 kb on - strand, within EX28DRAFT_1022at 1029.234 kb on - strand, within EX28DRAFT_1022at 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.401 kb on + strandat 1029.402 kb on - strandat 1029.402 kb on - strandat 1029.402 kb on - strandat 1029.402 kb on - strandat 1029.402 kb on - strandat 1029.402 kb on - strandat 1029.402 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
1,027,356 + +1.1
1,027,406 + +0.8
1,027,406 + -0.9
1,027,449 - -0.4
1,027,449 - -0.8
1,027,451 + +0.7
1,027,451 + -0.2
1,027,452 - +1.9
1,027,457 + +0.4
1,027,457 + +0.0
1,027,458 - -0.4
1,027,458 - -0.3
1,027,458 - +0.5
1,027,539 - EX28DRAFT_1019 0.19 +0.1
1,027,712 + EX28DRAFT_1019 0.84 +3.0
1,027,749 + -1.3
1,027,757 - +0.1
1,027,769 + +0.2
1,027,804 - EX28DRAFT_1020 0.11 +1.0
1,027,920 - EX28DRAFT_1020 0.38 -0.3
1,027,925 + EX28DRAFT_1020 0.39 -0.2
1,027,925 + EX28DRAFT_1020 0.39 +4.0
1,027,926 - EX28DRAFT_1020 0.39 +1.0
1,027,995 - EX28DRAFT_1020 0.55 -0.9
1,027,995 - EX28DRAFT_1020 0.55 +0.3
1,028,009 + EX28DRAFT_1020 0.58 -0.4
1,028,102 + EX28DRAFT_1020 0.79 -1.8
1,028,102 + EX28DRAFT_1020 0.79 -0.1
1,028,138 + EX28DRAFT_1020 0.87 +1.0
1,028,139 - EX28DRAFT_1020 0.88 +1.4
1,028,208 - +0.3
1,028,210 - +1.1
1,028,210 - +0.3
1,028,213 + -0.9
1,028,266 + -0.7
1,028,368 + EX28DRAFT_1021 0.36 +0.3
1,028,369 - EX28DRAFT_1021 0.37 +0.9
1,028,424 - EX28DRAFT_1021 0.80 +0.7
1,028,492 + +0.0
1,028,493 - +0.2
1,028,493 - +0.1
1,028,495 + -0.6
1,028,496 - +0.3
1,028,510 + -0.4
1,028,510 + -0.2
1,028,511 - +0.7
1,028,553 + EX28DRAFT_1022 0.10 -0.0
1,028,553 + EX28DRAFT_1022 0.10 +1.2
1,028,611 - EX28DRAFT_1022 0.16 -0.7
1,028,614 - EX28DRAFT_1022 0.16 -0.9
1,028,614 - EX28DRAFT_1022 0.16 +0.3
1,028,657 - EX28DRAFT_1022 0.21 -0.2
1,028,723 + EX28DRAFT_1022 0.27 +2.7
1,028,765 + EX28DRAFT_1022 0.31 -0.8
1,028,863 + EX28DRAFT_1022 0.41 -3.1
1,028,931 + EX28DRAFT_1022 0.48 -2.4
1,028,932 - EX28DRAFT_1022 0.48 -0.0
1,029,017 + EX28DRAFT_1022 0.56 +1.8
1,029,017 + EX28DRAFT_1022 0.56 -0.1
1,029,017 - EX28DRAFT_1022 0.56 +0.5
1,029,177 + EX28DRAFT_1022 0.72 -0.9
1,029,177 + EX28DRAFT_1022 0.72 +1.3
1,029,178 - EX28DRAFT_1022 0.72 +1.2
1,029,234 - EX28DRAFT_1022 0.78 -3.6
1,029,401 + +0.4
1,029,401 + +0.2
1,029,401 + -1.3
1,029,401 + -0.3
1,029,401 + -0.5
1,029,401 + +0.5
1,029,401 + +0.4
1,029,401 + -2.4
1,029,402 - -0.2
1,029,402 - -1.5
1,029,402 - +0.4
1,029,402 - +0.4
1,029,402 - +0.1
1,029,402 - +0.2
1,029,402 - +2.3

Or see this region's nucleotide sequence