Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0980

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0977 and EX28DRAFT_0978 overlap by 1 nucleotidesEX28DRAFT_0978 and EX28DRAFT_0979 are separated by 12 nucleotidesEX28DRAFT_0979 and EX28DRAFT_0980 are separated by 197 nucleotidesEX28DRAFT_0980 and EX28DRAFT_0981 are separated by 14 nucleotides EX28DRAFT_0977: EX28DRAFT_0977 - phage shock protein B, at 979,327 to 979,551 _0977 EX28DRAFT_0978: EX28DRAFT_0978 - phage shock protein C (PspC) family protein, at 979,551 to 979,910 _0978 EX28DRAFT_0979: EX28DRAFT_0979 - phage shock protein PspD, at 979,923 to 980,147 _0979 EX28DRAFT_0980: EX28DRAFT_0980 - Glycosidases, at 980,345 to 982,042 _0980 EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349 _0981 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2 3at 979.402 kb on + strand, within EX28DRAFT_0977at 979.704 kb on - strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.719 kb on + strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.720 kb on - strand, within EX28DRAFT_0978at 979.861 kb on - strand, within EX28DRAFT_0978at 979.909 kb on - strandat 979.957 kb on + strand, within EX28DRAFT_0979at 980.134 kb on - strandat 980.137 kb on + strandat 980.516 kb on + strand, within EX28DRAFT_0980at 980.573 kb on + strand, within EX28DRAFT_0980at 980.800 kb on - strand, within EX28DRAFT_0980at 981.008 kb on + strand, within EX28DRAFT_0980at 981.029 kb on + strand, within EX28DRAFT_0980at 981.030 kb on - strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.031 kb on + strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.236 kb on + strand, within EX28DRAFT_0980at 981.528 kb on + strand, within EX28DRAFT_0980at 981.594 kb on + strand, within EX28DRAFT_0980at 981.678 kb on - strand, within EX28DRAFT_0980at 982.155 kb on + strandat 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.288 kb on - strand, within EX28DRAFT_0981at 982.329 kb on + strand, within EX28DRAFT_0981at 982.339 kb on + strand, within EX28DRAFT_0981at 982.340 kb on - strand, within EX28DRAFT_0981at 982.407 kb on - strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.510 kb on + strand, within EX28DRAFT_0981at 982.759 kb on - strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.859 kb on - strand, within EX28DRAFT_0981

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
979,402 + EX28DRAFT_0977 0.33 -1.1
979,704 - EX28DRAFT_0978 0.42 -0.0
979,719 + EX28DRAFT_0978 0.47 +1.2
979,719 + EX28DRAFT_0978 0.47 +1.1
979,719 + EX28DRAFT_0978 0.47 -2.2
979,720 - EX28DRAFT_0978 0.47 +2.8
979,720 - EX28DRAFT_0978 0.47 -0.1
979,720 - EX28DRAFT_0978 0.47 -0.1
979,861 - EX28DRAFT_0978 0.86 -0.9
979,909 - -0.5
979,957 + EX28DRAFT_0979 0.15 -0.6
980,134 - +0.5
980,137 + -0.9
980,516 + EX28DRAFT_0980 0.10 -0.5
980,573 + EX28DRAFT_0980 0.13 -1.0
980,800 - EX28DRAFT_0980 0.27 -2.4
981,008 + EX28DRAFT_0980 0.39 +0.7
981,029 + EX28DRAFT_0980 0.40 +0.1
981,030 - EX28DRAFT_0980 0.40 +0.3
981,031 + EX28DRAFT_0980 0.40 +0.4
981,031 + EX28DRAFT_0980 0.40 +0.1
981,201 - EX28DRAFT_0980 0.50 +0.1
981,201 - EX28DRAFT_0980 0.50 +1.1
981,236 + EX28DRAFT_0980 0.52 -0.1
981,528 + EX28DRAFT_0980 0.70 -0.0
981,594 + EX28DRAFT_0980 0.74 +1.0
981,678 - EX28DRAFT_0980 0.79 +0.7
982,155 + +0.1
982,270 + EX28DRAFT_0981 0.16 +0.1
982,270 + EX28DRAFT_0981 0.16 -0.5
982,270 + EX28DRAFT_0981 0.16 +1.8
982,270 + EX28DRAFT_0981 0.16 +0.4
982,271 - EX28DRAFT_0981 0.17 +3.1
982,271 - EX28DRAFT_0981 0.17 -0.1
982,288 - EX28DRAFT_0981 0.18 +0.2
982,329 + EX28DRAFT_0981 0.21 +0.0
982,339 + EX28DRAFT_0981 0.22 -1.1
982,340 - EX28DRAFT_0981 0.22 +0.5
982,407 - EX28DRAFT_0981 0.27 -0.1
982,423 + EX28DRAFT_0981 0.28 -0.3
982,423 + EX28DRAFT_0981 0.28 +0.5
982,423 + EX28DRAFT_0981 0.28 +0.1
982,424 - EX28DRAFT_0981 0.28 +0.4
982,424 - EX28DRAFT_0981 0.28 -1.4
982,510 + EX28DRAFT_0981 0.35 -1.0
982,759 - EX28DRAFT_0981 0.54 +0.5
982,858 + EX28DRAFT_0981 0.62 -1.3
982,858 + EX28DRAFT_0981 0.62 +0.4
982,859 - EX28DRAFT_0981 0.62 +0.6

Or see this region's nucleotide sequence