Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0790 and EX28DRAFT_0791 are separated by 16 nucleotides EX28DRAFT_0791 and EX28DRAFT_0792 are separated by 11 nucleotides
EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222
_0790
EX28DRAFT_0791: EX28DRAFT_0791 - type VI secretion-associated protein, BMA_A0400 family, at 793,239 to 793,955
_0791
EX28DRAFT_0792: EX28DRAFT_0792 - type VI secretion-associated protein, ImpA family, at 793,967 to 794,983
_0792
Position (kb) 793
794 Strain fitness (log2 ratio) -1
0
1
2 at 792.553 kb on + strand, within EX28DRAFT_0790 at 792.709 kb on + strand, within EX28DRAFT_0790 at 792.710 kb on - strand, within EX28DRAFT_0790 at 792.719 kb on - strand, within EX28DRAFT_0790 at 792.743 kb on - strand, within EX28DRAFT_0790 at 792.761 kb on - strand, within EX28DRAFT_0790 at 793.003 kb on - strand at 793.239 kb on - strand at 793.286 kb on - strand at 793.807 kb on - strand, within EX28DRAFT_0791 at 793.863 kb on - strand, within EX28DRAFT_0791 at 793.967 kb on - strand at 793.973 kb on - strand at 794.031 kb on - strand at 794.141 kb on + strand, within EX28DRAFT_0792 at 794.142 kb on - strand, within EX28DRAFT_0792 at 794.182 kb on - strand, within EX28DRAFT_0792 at 794.328 kb on - strand, within EX28DRAFT_0792 at 794.359 kb on + strand, within EX28DRAFT_0792 at 794.670 kb on + strand, within EX28DRAFT_0792 at 794.834 kb on + strand, within EX28DRAFT_0792 at 794.835 kb on - strand, within EX28DRAFT_0792 at 794.846 kb on + strand, within EX28DRAFT_0792 at 794.905 kb on + strand at 794.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 792,553 + EX28DRAFT_0790 0.81 -0.0 792,709 + EX28DRAFT_0790 0.86 -0.3 792,710 - EX28DRAFT_0790 0.86 -1.1 792,719 - EX28DRAFT_0790 0.86 +1.4 792,743 - EX28DRAFT_0790 0.87 +0.1 792,761 - EX28DRAFT_0790 0.87 +0.0 793,003 - +0.9 793,239 - -1.1 793,286 - +1.6 793,807 - EX28DRAFT_0791 0.79 +0.4 793,863 - EX28DRAFT_0791 0.87 +1.9 793,967 - +1.2 793,973 - +0.3 794,031 - -0.1 794,141 + EX28DRAFT_0792 0.17 -0.5 794,142 - EX28DRAFT_0792 0.17 +0.7 794,182 - EX28DRAFT_0792 0.21 +0.0 794,328 - EX28DRAFT_0792 0.35 +0.8 794,359 + EX28DRAFT_0792 0.39 +0.2 794,670 + EX28DRAFT_0792 0.69 +0.4 794,834 + EX28DRAFT_0792 0.85 -0.7 794,835 - EX28DRAFT_0792 0.85 +0.8 794,846 + EX28DRAFT_0792 0.86 +0.3 794,905 + +0.8 794,906 - +1.0
Or see this region's nucleotide sequence