Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0445

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0443 and EX28DRAFT_0444 overlap by 1 nucleotidesEX28DRAFT_0444 and EX28DRAFT_0445 overlap by 1 nucleotidesEX28DRAFT_0445 and EX28DRAFT_0446 are separated by 76 nucleotidesEX28DRAFT_0446 and EX28DRAFT_0447 are separated by 35 nucleotides EX28DRAFT_0443: EX28DRAFT_0443 - Periplasmic protein involved in polysaccharide export, at 424,003 to 425,143 _0443 EX28DRAFT_0444: EX28DRAFT_0444 - Protein-tyrosine-phosphatase, at 425,143 to 425,592 _0444 EX28DRAFT_0445: EX28DRAFT_0445 - capsular exopolysaccharide family, at 425,592 to 427,772 _0445 EX28DRAFT_0446: EX28DRAFT_0446 - Thiol-disulfide isomerase and thioredoxins, at 427,849 to 428,364 _0446 EX28DRAFT_0447: EX28DRAFT_0447 - Glutamate decarboxylase and related PLP-dependent proteins, at 428,400 to 429,866 _0447 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 424.632 kb on + strand, within EX28DRAFT_0443at 424.680 kb on + strand, within EX28DRAFT_0443at 424.681 kb on - strand, within EX28DRAFT_0443at 424.681 kb on - strand, within EX28DRAFT_0443at 424.801 kb on - strand, within EX28DRAFT_0443at 424.873 kb on + strand, within EX28DRAFT_0443at 424.915 kb on + strand, within EX28DRAFT_0443at 424.915 kb on + strand, within EX28DRAFT_0443at 424.916 kb on - strand, within EX28DRAFT_0443at 424.945 kb on + strand, within EX28DRAFT_0443at 424.949 kb on + strand, within EX28DRAFT_0443at 424.949 kb on + strand, within EX28DRAFT_0443at 424.950 kb on - strand, within EX28DRAFT_0443at 425.012 kb on + strand, within EX28DRAFT_0443at 425.025 kb on - strand, within EX28DRAFT_0443at 425.025 kb on - strand, within EX28DRAFT_0443at 425.120 kb on + strandat 425.141 kb on + strandat 425.142 kb on - strandat 425.178 kb on + strandat 425.238 kb on + strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.591 kb on - strandat 425.604 kb on - strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.617 kb on - strandat 425.619 kb on - strandat 425.915 kb on - strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.926 kb on - strand, within EX28DRAFT_0445at 425.926 kb on - strand, within EX28DRAFT_0445at 425.987 kb on + strand, within EX28DRAFT_0445at 425.988 kb on - strand, within EX28DRAFT_0445at 426.001 kb on + strand, within EX28DRAFT_0445at 426.002 kb on - strand, within EX28DRAFT_0445at 426.248 kb on + strand, within EX28DRAFT_0445at 426.278 kb on + strand, within EX28DRAFT_0445at 426.332 kb on + strand, within EX28DRAFT_0445at 426.332 kb on + strand, within EX28DRAFT_0445at 426.333 kb on - strand, within EX28DRAFT_0445at 426.333 kb on - strand, within EX28DRAFT_0445at 426.335 kb on + strand, within EX28DRAFT_0445at 426.365 kb on + strand, within EX28DRAFT_0445at 426.426 kb on - strand, within EX28DRAFT_0445at 426.499 kb on + strand, within EX28DRAFT_0445at 426.499 kb on + strand, within EX28DRAFT_0445at 426.500 kb on - strand, within EX28DRAFT_0445at 426.500 kb on - strand, within EX28DRAFT_0445at 426.500 kb on - strand, within EX28DRAFT_0445at 426.749 kb on - strand, within EX28DRAFT_0445at 426.750 kb on + strand, within EX28DRAFT_0445at 426.750 kb on + strand, within EX28DRAFT_0445at 426.751 kb on - strand, within EX28DRAFT_0445at 426.785 kb on + strand, within EX28DRAFT_0445at 426.822 kb on - strand, within EX28DRAFT_0445at 426.881 kb on - strand, within EX28DRAFT_0445at 426.883 kb on + strand, within EX28DRAFT_0445at 426.884 kb on - strand, within EX28DRAFT_0445at 426.887 kb on + strand, within EX28DRAFT_0445at 426.888 kb on - strand, within EX28DRAFT_0445at 426.888 kb on - strand, within EX28DRAFT_0445at 426.888 kb on - strand, within EX28DRAFT_0445at 426.888 kb on - strand, within EX28DRAFT_0445at 426.888 kb on - strand, within EX28DRAFT_0445at 426.954 kb on - strand, within EX28DRAFT_0445at 427.121 kb on + strand, within EX28DRAFT_0445at 427.122 kb on - strand, within EX28DRAFT_0445at 427.166 kb on + strand, within EX28DRAFT_0445at 427.166 kb on + strand, within EX28DRAFT_0445at 427.290 kb on - strand, within EX28DRAFT_0445at 427.302 kb on - strand, within EX28DRAFT_0445at 427.314 kb on + strand, within EX28DRAFT_0445at 427.314 kb on + strand, within EX28DRAFT_0445at 427.314 kb on + strand, within EX28DRAFT_0445at 427.450 kb on + strand, within EX28DRAFT_0445at 427.450 kb on + strand, within EX28DRAFT_0445at 427.450 kb on + strand, within EX28DRAFT_0445at 427.450 kb on + strand, within EX28DRAFT_0445at 427.451 kb on - strand, within EX28DRAFT_0445at 427.505 kb on - strand, within EX28DRAFT_0445at 427.505 kb on - strand, within EX28DRAFT_0445at 427.722 kb on + strandat 427.722 kb on + strandat 427.723 kb on - strandat 427.725 kb on + strandat 427.726 kb on - strandat 427.739 kb on + strandat 427.760 kb on + strandat 427.760 kb on + strandat 427.771 kb on - strandat 427.792 kb on + strandat 428.016 kb on + strand, within EX28DRAFT_0446at 428.053 kb on + strand, within EX28DRAFT_0446at 428.079 kb on - strand, within EX28DRAFT_0446at 428.139 kb on + strand, within EX28DRAFT_0446at 428.140 kb on - strand, within EX28DRAFT_0446at 428.258 kb on + strand, within EX28DRAFT_0446at 428.302 kb on - strand, within EX28DRAFT_0446at 428.334 kb on - strandat 428.367 kb on + strandat 428.401 kb on + strandat 428.402 kb on - strandat 428.402 kb on - strandat 428.402 kb on - strandat 428.655 kb on - strand, within EX28DRAFT_0447

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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424,632 + EX28DRAFT_0443 0.55 -0.6
424,680 + EX28DRAFT_0443 0.59 +0.1
424,681 - EX28DRAFT_0443 0.59 -0.8
424,681 - EX28DRAFT_0443 0.59 +0.1
424,801 - EX28DRAFT_0443 0.70 -0.9
424,873 + EX28DRAFT_0443 0.76 +0.3
424,915 + EX28DRAFT_0443 0.80 -0.2
424,915 + EX28DRAFT_0443 0.80 -0.6
424,916 - EX28DRAFT_0443 0.80 +0.1
424,945 + EX28DRAFT_0443 0.83 +0.2
424,949 + EX28DRAFT_0443 0.83 -0.8
424,949 + EX28DRAFT_0443 0.83 -0.0
424,950 - EX28DRAFT_0443 0.83 +0.1
425,012 + EX28DRAFT_0443 0.88 +2.1
425,025 - EX28DRAFT_0443 0.90 -0.1
425,025 - EX28DRAFT_0443 0.90 -0.6
425,120 + +0.3
425,141 + -0.6
425,142 - -0.5
425,178 + -0.9
425,238 + EX28DRAFT_0444 0.21 -0.1
425,519 - EX28DRAFT_0444 0.84 +0.7
425,519 - EX28DRAFT_0444 0.84 +0.2
425,519 - EX28DRAFT_0444 0.84 +0.3
425,591 - -2.0
425,604 - -0.0
425,616 + -1.3
425,616 + +1.0
425,616 + -0.6
425,616 + -1.5
425,616 + +0.5
425,616 + +0.1
425,617 - +0.7
425,619 - -0.2
425,915 - EX28DRAFT_0445 0.15 -1.3
425,925 + EX28DRAFT_0445 0.15 +0.3
425,925 + EX28DRAFT_0445 0.15 -0.6
425,925 + EX28DRAFT_0445 0.15 -0.2
425,926 - EX28DRAFT_0445 0.15 +0.5
425,926 - EX28DRAFT_0445 0.15 +0.9
425,987 + EX28DRAFT_0445 0.18 -2.7
425,988 - EX28DRAFT_0445 0.18 +1.2
426,001 + EX28DRAFT_0445 0.19 -0.3
426,002 - EX28DRAFT_0445 0.19 +1.0
426,248 + EX28DRAFT_0445 0.30 -0.5
426,278 + EX28DRAFT_0445 0.31 -1.8
426,332 + EX28DRAFT_0445 0.34 -0.1
426,332 + EX28DRAFT_0445 0.34 -0.2
426,333 - EX28DRAFT_0445 0.34 +0.7
426,333 - EX28DRAFT_0445 0.34 +0.0
426,335 + EX28DRAFT_0445 0.34 +0.0
426,365 + EX28DRAFT_0445 0.35 +0.2
426,426 - EX28DRAFT_0445 0.38 -0.1
426,499 + EX28DRAFT_0445 0.42 -1.0
426,499 + EX28DRAFT_0445 0.42 -0.6
426,500 - EX28DRAFT_0445 0.42 -0.1
426,500 - EX28DRAFT_0445 0.42 -0.7
426,500 - EX28DRAFT_0445 0.42 -0.7
426,749 - EX28DRAFT_0445 0.53 -0.1
426,750 + EX28DRAFT_0445 0.53 +0.3
426,750 + EX28DRAFT_0445 0.53 +0.4
426,751 - EX28DRAFT_0445 0.53 +0.2
426,785 + EX28DRAFT_0445 0.55 -0.0
426,822 - EX28DRAFT_0445 0.56 +0.3
426,881 - EX28DRAFT_0445 0.59 -0.0
426,883 + EX28DRAFT_0445 0.59 -0.0
426,884 - EX28DRAFT_0445 0.59 +0.4
426,887 + EX28DRAFT_0445 0.59 +0.1
426,888 - EX28DRAFT_0445 0.59 -1.2
426,888 - EX28DRAFT_0445 0.59 +0.2
426,888 - EX28DRAFT_0445 0.59 -1.0
426,888 - EX28DRAFT_0445 0.59 -0.6
426,888 - EX28DRAFT_0445 0.59 -2.8
426,954 - EX28DRAFT_0445 0.62 -3.8
427,121 + EX28DRAFT_0445 0.70 -0.4
427,122 - EX28DRAFT_0445 0.70 +0.8
427,166 + EX28DRAFT_0445 0.72 +1.7
427,166 + EX28DRAFT_0445 0.72 -1.2
427,290 - EX28DRAFT_0445 0.78 +0.3
427,302 - EX28DRAFT_0445 0.78 +0.0
427,314 + EX28DRAFT_0445 0.79 -0.1
427,314 + EX28DRAFT_0445 0.79 -0.4
427,314 + EX28DRAFT_0445 0.79 +0.1
427,450 + EX28DRAFT_0445 0.85 +1.2
427,450 + EX28DRAFT_0445 0.85 +0.9
427,450 + EX28DRAFT_0445 0.85 -2.0
427,450 + EX28DRAFT_0445 0.85 +0.3
427,451 - EX28DRAFT_0445 0.85 -0.6
427,505 - EX28DRAFT_0445 0.88 +0.3
427,505 - EX28DRAFT_0445 0.88 +0.5
427,722 + +0.9
427,722 + -0.7
427,723 - +0.1
427,725 + +0.2
427,726 - +0.4
427,739 + -0.2
427,760 + +0.4
427,760 + +0.2
427,771 - +1.4
427,792 + +0.0
428,016 + EX28DRAFT_0446 0.32 -0.2
428,053 + EX28DRAFT_0446 0.40 +0.1
428,079 - EX28DRAFT_0446 0.45 +0.0
428,139 + EX28DRAFT_0446 0.56 -0.5
428,140 - EX28DRAFT_0446 0.56 +0.1
428,258 + EX28DRAFT_0446 0.79 +1.8
428,302 - EX28DRAFT_0446 0.88 -0.2
428,334 - -2.8
428,367 + -0.6
428,401 + -1.0
428,402 - +0.7
428,402 - +0.1
428,402 - +0.5
428,655 - EX28DRAFT_0447 0.17 +0.9

Or see this region's nucleotide sequence